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Minor Genes (minor + gene)
Selected AbstractsORIGINAL ARTICLE: Genetics, adaptation, and invasion in harsh environmentsEVOLUTIONARY APPLICATIONS (ELECTRONIC), Issue 2 2010Richard Gomulkiewicz Abstract We analyze mathematical models to examine how the genetic basis of fitness affects the persistence of a population suddenly encountering a harsh environment where it would go extinct without evolution. The results are relevant for novel introductions and for an established population whose existence is threatened by a sudden change in the environment. The models span a range of genetic assumptions, including identical loci that contribute to absolute fitness, a two-locus quantitative genetic model with nonidentical loci, and a model with major and minor genes affecting a quantitative trait. We find as a general (though not universal) pattern that prospects for persistence narrow as more loci contribute to fitness, in effect because selection per locus is increasingly weakened with more loci, which can even overwhelm any initial enhancement of fitness that adding loci might provide. When loci contribute unequally to fitness, genes of small effect can significantly reduce extinction risk. Indeed, major and minor genes can interact synergistically to reduce the time needed to evolve growth. Such interactions can also increase vulnerability to extinction, depending not just on how genes interact but also on the initial genetic structure of the introduced, or newly invaded, population. [source] Hypomethylation and hypermethylation of the tandem repetitive 5S rRNA genes in ArabidopsisTHE PLANT JOURNAL, Issue 2 2008Isabelle Vaillant Summary 5S ribosomal DNA (5S rDNA) is organized in tandem repeats on chromosomes 3, 4 and 5 in Arabidopsis thaliana. One part of the 5S rDNA is located within the heterochromatic chromocenters, and the other fraction forms loops with euchromatic features that emanate from the chromocenters. We investigated whether the A. thaliana heterochromatin, and particularly the 5S rDNA, is modified when changing the culture conditions (cultivation in growth chamber versus greenhouse). Nuclei from challenged tissues displayed larger total, as well as 5S rDNA, heterochromatic fractions, and the DNA methyltransferase mutants met1 and cmt3 had different impacts in Arabidopsis. The enlarged fraction of heterochromatic 5S rDNA was observed, together with the reversal of the silencing of some 5S rRNA genes known as minor genes. We observed hypermethylation at CATG sites, and a concomitant DNA hypomethylation at CG/CXG sites in 5S rDNA. Our results show that the asymmetrical hypermethylation is correlated with the ageing of the plants, whereas hypomethylation results from the growth chamber/culture conditions. In spite of severely reduced DNA methylation, the met1 mutant revealed no increase in minor 5S rRNA transcripts in these conditions. The increasing proportion of cytosines in asymmetrical contexts during transition from the euchromatic to the heterochromatic state in the 5S rDNA array suggests that 5S rDNA units are differently affected by the (hypo and hyper)methylation patterns along the 5S rDNA locus. This might explain the different behaviour of 5S rDNA subpopulations inside a 5S array in terms of chromatin compaction and expression, i.e. some 5S rRNA genes would become derepressed, whereas others would join the heterochromatic fraction. [source] Factors underpinning the responsiveness and higher levels of virus resistance realised in potato genotypes carrying virus-specific R genesANNALS OF APPLIED BIOLOGY, Issue 2 2010A.L. Vuorinen Responses to Potato virus A (PVA, genus Potyvirus) segregate to three phenotypic groups in a diploid cross between Solanum tuberosum subsp. andigena and a highly interspecific potato hybrid. The aim of this study was to compare gene expression between the progeny genotypes which react with hypersensitive response (HR) to PVA, allow PVA accumulation in inoculated leaves but restrict PVA infection to the inoculated leaf by blocking systemic movement [non-necrotic resistance (nnr)], or are susceptible (S) and systemically infected with PVA. Expression levels of ca 10 000 genes were compared using probes arranged in a microarray format, and real-time RT-PCR was applied for quantitative comparison of the expression of selected defense-related genes (DRGs). Results showed that a few DRGs were autoactivated in HR genotypes at an early stage of plant growth in the absence of PVA infection, which was not observed in the two other phenotypic groups (nnr and S). More detailed studies on the DRGs encoding a beta-1,3-glucanase, a chitinase and a basic PR-1b protein showed that autoactivation of the genes was not evident in vitro and up to 2 weeks of growth in soil in a controlled growth cabinet but was apparent 2 weeks later. Hence, autoinduction of these DRGs in the HR genotypes could be associated with growth stage, environmental factors or both. Furthermore, a number of other DRGs were induced in the inoculated leaves of HR genotypes as a response to infection with PVA, which was not observed in nnr and S genotypes. These results provide some novel information about factors underpinning the higher levels of virus resistance realised in potato genotypes carrying virus-specific R genes and suggest that part of the resistance is attributable to additional ,minor' genes functioning simultaneously, hence adding to the overall responsiveness and level of resistance against infection. These results also imply that some genotypes might be more responsive to chemical induction of pathogen and pest resistance, which could be considered in screening of progenies in plant-breeding programs. [source] Effectiveness of resistance genes to the large raspberry aphid, Amphorophora idaei Börner, in different raspberry (Rubus idaeus L.) genotypes and under different environmental conditionsANNALS OF APPLIED BIOLOGY, Issue 2 2000A T JONES Summary The introduction into commerce of raspberry cultivars with major gene resistance to the large raspberry aphid, Amphorophora idaei, an important pest and virus vector on red raspberry in Europe, has been very effective both in decreasing pest numbers and greatly restricting infection with the viruses it transmits. However, biotypes of the aphid able to overcome these genes have developed in the field in recent years. Additionally, in field and laboratory tests, the response to aphid biotypes and recognised aphid strains of certain raspberry cultivars, such as Glen Prosen and Delight, differ markedly despite the fact that they are reputed to contain the same A. idaei -resistance gene, A1. In attempts to understand the reasons for this difference in response, analysis was made of the segregation of progeny seedlings from crosses between A. idaei -resistant and -susceptible cultivars to two recognised strains of the aphid. These studies showed that, as expected, cv. Autumn Bliss contained the A. idaei -resistance gene, A10, and cvs Delight and Glen Prosen each contained the A. idaei -resistance gene, A1. When progeny seedlings were assayed in a heated glasshouse as young plants and in an unheated Tygan house as 1 m tall plants, the segregation ratios for resistance and susceptibility to A. idaei were largely unchanged. However, when the resistance of individual progeny plants was assessed, c. 37% of the putative gene A1 -containing progeny and 9,23% of the putative gene A10 -containing progeny, behaved differently in these two environments. Experiments involving an A. idaei -resistant and -susceptible parent cultivar showed that shading plants increased their susceptibility to A. idaei colonisation. Whilst this shading effect has implications for experimentally detecting A. idaei -resistant progeny in segregating raspberry seedlings, it does not explain the difference in field resistance to A. idaei of cvs Delight and Glen Prosen. Such differences in the field seem best explained by the presence in these cultivars of ,minor' genes for A. idaei resistance and/or susceptibility that influences the effectiveness of gene A1. [source] | ||||||||||