Home About us Contact
|
Home About us Contact | ||
|
|
||
Microbial Ecosystems (microbial + ecosystem)
Selected AbstractsBiogeochemistry of a gypsum-encrusted microbial ecosystemGEOBIOLOGY, Issue 3 2004D. E. CANFIELD ABSTRACT Gypsum crusts containing multicolored stratified microbial populations grow in the evaporation ponds of a commercial saltern in Eilat, Israel. These crusts contain two prominent cyanobacterial layers, a bright purple layer of anoxygenic phototrophs, and a lower black layer with active sulphate reduction. We explored the diel dynamics of oxygen and sulphide within the crust using specially constructed microelectrodes, and further explored the crust biogeochemistry by measuring rates of sulphate reduction, stable sulphur isotope composition, and oxygen exchange rates across the crust,brine interface. We explored crusts from ponds with two different salinities, and found that the crust in the highest salinity was the less active. Overall, these crusts exhibited much lower rates of oxygen production than typical organic-rich microbial mats. However, this was mainly due to much lower cell densities within the crusts. Surprisingly, on a per cell-volume basis, rates of photosynthesis were similar to organic-rich microbial mats. Due to relatively low rates of oxygen production and deep photic zones extending from 1.5 to 3 cm depth, a large percentage of the oxygen produced during the day accumulated into the crusts. Indeed, only between 16% to 34% of the O2 produced in the crust escaped, and the remainder was internally recycled, used mainly in O2 respiration. We view these crusts as potential homologs to ancient salt-encrusted microbial ecosystems, and we compared them to the 3.45 billion-year-old quartz barite deposits from North Pole, Australia, which originally precipitated gypsum. [source] In vitro degradation by mixed rumen bacteria of 17 mono- and sesquiterpenes typical of winter and spring diets of goats on Basilitica rangelands (southern Italy)JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 3 2009Mostafa Malecky Abstract BACKGROUND: Nine monoterpenes (,-3-carene, p -cymene, limonene, ,-myrcene, (E)- and (Z)-,-ocimene, ,-phellandrene, ,-terpinene, ,-terpinene), seven oxygenated monoterpenes (1,8-cineole, linalool, (E)- and (Z)-linalool oxide, 4-terpinenol, ,-terpineol, ,-terpinolene) and one sesquiterpene (,-cedrene) were investigated for their degradability in the rumen microbial ecosystem. These molecules were identified as dominant terpenes in the winter and spring diets of milking goats in Basilicata (southern Italy). RESULTS: All terpenes were tested at 3.33 µL L,1 for 24 h using in vitro incubation with mixed rumen bacteria from dairy goats. Oxygen-containing compounds were those recovered at the highest levels (89% of (E)-linalool oxide, 93% of (Z)-linalool oxide, 91% of 1,8-cineole, 82% of terpineol and 72% of 4-terpinenol), except linalool. The linear alkenes ,-myrcene and ,-ocimene almost completely disappeared. Results were more variable among cyclic alkenes, with recovery rates ranging from 50% in the case of limonene to less than 1% for ,-phellandrene. 17% of the only sesquiterpene of the group, ,-cedrene, was recovered. CONCLUSION: Recovery rates differed markedly among terpenes, partly in relation to the presence of oxygen and rings in the molecules. These observations should contribute to a better understanding of the changes in composition between the diet and milk terpenes. Copyright © 2008 Society of Chemical Industry [source] Diversity of phototrophic bacteria in microbial mats from Arctic hot springs (Greenland)ENVIRONMENTAL MICROBIOLOGY, Issue 1 2007Guus Roeselers Summary We investigated the genotypic diversity of oxygenic and anoxygenic phototrophic microorganisms in microbial mat samples collected from three hot spring localities on the east coast of Greenland. These hot springs harbour unique Arctic microbial ecosystems that have never been studied in detail before. Specific oligonucleotide primers for cyanobacteria, purple sulfur bacteria, green sulfur bacteria and Choroflexus/Roseiflexus -like green non-sulfur bacteria were used for the selective amplification of 16S rRNA gene fragments. Amplification products were separated by denaturing gradient gel electrophoresis (DGGE) and sequenced. In addition, several cyanobacteria were isolated from the mat samples, and classified morphologically and by 16S rRNA-based methods. The cyanobacterial 16S rRNA sequences obtained from DGGE represented a diverse, polyphyletic collection of cyanobacteria. The microbial mat communities were dominated by heterocystous and non-heterocystous filamentous cyanobacteria. Our results indicate that the cyanobacterial community composition in the samples were different for each sampling site. Different layers of the same heterogeneous mat often contained distinct and different communities of cyanobacteria. We observed a relationship between the cyanobacterial community composition and the in situ temperatures of different mat parts. The Greenland mats exhibited a low diversity of anoxygenic phototrophs as compared with other hot spring mats which is possibly related to the photochemical conditions within the mats resulting from the Arctic light regime. [source] Microbial interactions affecting the natural transformation of Bacillus subtilis in a model aquatic ecosystemFEMS MICROBIOLOGY ECOLOGY, Issue 3 2003Kazuaki Matsui Abstract The involvement of microbial interactions in natural transformation of bacteria was evaluated using an aquatic model system. For this purpose, the naturally transformable Bacillus subtilis was used as the model bacterium which was co-cultivated with the protist Tetrahymena thermophila (a consumer) and/or the photosynthetic alga Euglena gracilis (a producer). Co-cultivation with as few as 102 individuals ml,1 of T. thermophila lowered the number of transformants to less than the detectable level (<1×100 ml,1), while co-cultivation with E. gracilis did not. Metabolites from co-cultures of T. thermophila and B. subtilis also decreased the number of transformants to less than the detectable level, while metabolites from co-culture of T. thermophila and B. subtilis with E. gracilis did not. Thus, the introduction of transformation inhibitory factor(s) by the grazing of T. thermophila and the attenuation of this inhibitory factor(s) by E. gracilis is indicated. These observations suggest that biological components do affect the natural transformation of B. subtilis. The study described is the first to suggest that ecological interactions are responsible not only for the carbon and energy cycles, but also for the processes governing horizontal transfer of genes, in microbial ecosystems. [source] Biogeochemistry of a gypsum-encrusted microbial ecosystemGEOBIOLOGY, Issue 3 2004D. E. CANFIELD ABSTRACT Gypsum crusts containing multicolored stratified microbial populations grow in the evaporation ponds of a commercial saltern in Eilat, Israel. These crusts contain two prominent cyanobacterial layers, a bright purple layer of anoxygenic phototrophs, and a lower black layer with active sulphate reduction. We explored the diel dynamics of oxygen and sulphide within the crust using specially constructed microelectrodes, and further explored the crust biogeochemistry by measuring rates of sulphate reduction, stable sulphur isotope composition, and oxygen exchange rates across the crust,brine interface. We explored crusts from ponds with two different salinities, and found that the crust in the highest salinity was the less active. Overall, these crusts exhibited much lower rates of oxygen production than typical organic-rich microbial mats. However, this was mainly due to much lower cell densities within the crusts. Surprisingly, on a per cell-volume basis, rates of photosynthesis were similar to organic-rich microbial mats. Due to relatively low rates of oxygen production and deep photic zones extending from 1.5 to 3 cm depth, a large percentage of the oxygen produced during the day accumulated into the crusts. Indeed, only between 16% to 34% of the O2 produced in the crust escaped, and the remainder was internally recycled, used mainly in O2 respiration. We view these crusts as potential homologs to ancient salt-encrusted microbial ecosystems, and we compared them to the 3.45 billion-year-old quartz barite deposits from North Pole, Australia, which originally precipitated gypsum. [source] Lipid biomarker and carbon isotopic signatures for stromatolite-forming, microbial mat communities and Phormidium cultures from Yellowstone National ParkGEOBIOLOGY, Issue 1 2004Linda L. Jahnke ABSTRACT The molecular and isotopic compositions of lipid biomarkers from cultured filamentous cyanobacteria (Phormidium, also known as Leptolyngbya) have been used to investigate the community and trophic structure of photosynthetic mats from alkaline hot springs of the Lower Geyser Basin at Yellowstone National Park. We studied a shallow-water coniform mat from Octopus Spring (OS) and a submerged, tufted mat from Fountain Paint Pots (FPP) and found that 2-methylhopanepolyols and mid-chain branched methylalkanes were diagnostic for cyanobacteria, whereas abundant wax esters were representative of the green non-sulphur bacterial population. The biomarker composition of cultured Phormidium -isolates varied, but was generally representative of the bulk mat composition. The carbon isotopic fractionation for biomass relative to dissolved inorganic carbon (DIC; ,CO2) for cultures grown with 1% CO2 ranged from 21.4 to 26.1 and was attenuated by diffusion limitation associated with filament aggregation (i.e. cell clumping). Isotopic differences between biomass and lipid biomarkers, and between lipid classes, depended on the cyanobacterial strain, but was positively correlated with overall fractionation. Acetogenic lipids (alkanes and fatty acids) were generally more depleted than isoprenoids (phytol and hopanoids). The ,13CTOC for OS and FPP mats were somewhat heavier than for cultures (,16.9 and ,23.6, respectively), which presumably reflects the lower availability of DIC in the natural environment. The isotopic dispersions among cyanobacterial biomarkers, biomass and DIC reflected those established for culture experiments. The 7-methyl- and 7,11-dimethylheptadecanes were from 9 to 11 depleted relative to the bulk organic carbon, whereas 2-methylhopanols derived from the oxidation-reduction of bacteriohopanepolyol were enriched relative to branched alkanes by approximately 5,7. These isotopic relationships survived with depth and indicated that the relatively heavy isotopic composition of the OS mat resulted from diffusion limitation. This study supports the suggestion that culture studies can establish valid isotopic relationships for interpretation of trophic structure in modern and ancient microbial ecosystems. [source] Lactococcus lactis produces short-chain quinones that cross-feed Group B Streptococcus to activate respiration growthMOLECULAR MICROBIOLOGY, Issue 5 2008Lahcen Rezaļki Summary Quinones are essential components of the respiration chain that shuttle electrons between oxidoreductases. We characterized the quinones synthesized by Lactococcus lactis, a fermenting bacterium that activates aerobic respiration when a haem source is provided. Two distinct subgroups were characterized: Menaquinones (MK) MK-8 to MK-10, considered as hallmarks of L. lactis, are produced throughout growth. MK-3 and demethylMK-3 [(D)MK-3] are newly identified and are present only late in growth. Production of (D)MK-3 was conditional on the carbon sugar and on the presence of carbon catabolite regulator gene ccpA. Electron flux driven by both (D)MK fractions was shared between the quinol oxidase and extracellular acceptors O2, iron and, with remarkable efficiency, copper. Purified (D)MK-3, but not MK-8,10, complemented a menB defect in L. lactis. We previously showed that a respiratory metabolism is activated in Group B Streptococcus (GBS) by exogenous haem and MK, and that this activity is implicated in virulence. Here we show that growing lactococci donate (D)MK to GBS to activate respiration and stimulate growth of this opportunist pathogen. We propose that conditions favouring (D)MK production in dense microbial ecosystems, as present in the intestinal tract, could favour implantation of (D)MK-scavengers like GBS within the complex. [source] Use of checkerboard DNA,DNA hybridization to study complex microbial ecosystemsMOLECULAR ORAL MICROBIOLOGY, Issue 6 2004S. S. Socransky It has been difficult to conduct large scale studies of microbiologically complex ecosystems using conventional microbiological techniques. Molecular identification techniques in new probe-target formats, such as checkerboard DNA,DNA hybridization, permit enumeration of large numbers of species in very large numbers of samples. Digoxigenin-labeled whole genomic probes to 40 common subgingival species were tested in a checkerboard hydridization format. Chemifluorescent signals resulting from the hybridization reactions were quantified using a Fluorimager and used to evaluate sensitivity and specificity of the probes. Sensitivity of the DNA probes was adjusted to detect 104 cells. In all, 93.5% of potential cross-reactions to 80 cultivable species exhibited signals <5% of that detected for the homologous probe signal. Competitive hybridization and probes prepared by subtraction hybridization and polymerase chain reaction were effective in minimizing cross-reactions for closely related taxa. To demonstrate utility, the technique was used to evaluate 8887 subgingival plaque samples from 79 periodontally healthy and 272 chronic periodontitis subjects and 8126 samples from 166 subjects taken prior to and after periodontal therapy. Significant differences were detected for many taxa for mean counts, proportion of total sample, and percentage of sites colonized between samples from periodontally healthy and periodontitis subjects. Further, significant reductions were observed post therapy for many subgingival species including periodontal pathogens. DNA probes used in the checkerboard DNA,DNA format provide a useful tool for the enumeration of bacterial species in microbiologically complex systems. [source] The Flask model: emergence of nutrient-recycling microbial ecosystems and their disruption by environment-altering ,rebel' organismsOIKOS, Issue 7 2007Hywel T. P. Williams Here we introduce a new model of life,environment interaction, which simulates an evolving microbial community in a ,Fask' of liquid with prescribed inputs of nutrients. The flask is seeded with a clonal population of ,microbes' that are subject to mutation on genetic loci that determine their nutrient uptake patterns, release patterns, and their effects on, and response to, other environmental variables. In contrast to existing models of life-environment interaction, notably Daisyworld, what benefits the individual organisms is decoupled from their ,global' (system-level) effects. A robust property of the model is the emergence of ecosystems that tend toward a state where nutrients are efficiently utilised and differentially recycled, with a correlated increase in total population. Organisms alter the environment as a free ,by-product' of their growth, and their growth is constrained by adverse environmental effects. This introduces environmental feedback, which can disrupt the model ecosystems, even though there are no constraints on the conditions to which the organisms can theoretically adapt. ,Rebel' organisms can appear that grow rapidly by exploiting an under-utilised resource, but in doing so shift the environment away from the state to which the majority of the community are adapted. The result can be a population crash with lossof recycling, followed by later recovery, or in extreme cases, a total extinction of the system. Numerous runs of these ,flask' ecosystems show that tighter environmental constraints on growth make the system more vulnerable to internally generated ecosystem extinction. [source] | ||||||||||