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Microbial Alteration (microbial + alteration)

Distribution by Scientific Domains
Earth and Environmental Science100%

Selected Abstracts

Microtubules in basalt glass from Hawaii Scientific Driling Project #2 phase 1 core and Hilina slope, Hawaii: evidence of the occurrence and behavior of endolithic microorganisms

GEOBIOLOGY, Issue 4 2008
A. W WALTON
ABSTRACT Elongate, fine tubes, ~1 µm wide and up to 200 µm long, extend from fractured surfaces, vesicle walls, and internal fractures into fragments of basalt glass in samples from the Hawaii Scientific Drilling Project #2 phase 1 (HSDP #21) core and the Hilina slope, Hawaii. Several features indicate that these tubes are microbial endolithic microborings: the tubes resemble many described microborings from oceanic basalt glass, their formation is postdepositional but restricted to certain but different ranges of time in the two sets of samples, and they are not uniformly distributed throughout glass fragments. Microtubules record several characteristic behaviors including boring into glass, mining, seeking olivine, and avoiding plagioclase. They also are highly associated with a particular form of glass-replacing smectite. Evidence of behavior should join morphological and geochemical criteria in indicating microbial alteration of basalt glass. In some samples, steeply conical tubes, ~10,20 µm in diameter tapering to 1 µm and commonly filled with smectite, appear to be modifications or elaborations of the microtubules. These also curve toward olivine and are associated with replacement smectite. In HSDP #21 samples, microtubules initiated at margins of shards before palagonite replaced those margins and are preserved during palagonitization. In fact, microtubules appear to have provided routes that enhanced the efficiency of water's reaching of unaltered glass. In Hilina Slope samples, the microtubules appear to postdate palagonitization because they initiate at the boundary between palagonite and unaltered sideromelane. Preservation of microtubules during palagonitization in samples together with recognition of other associated characteristics representing behavior suggests that such features may be recognizable in more heavily altered ancient rocks. [source]

Sub-micron spongiform porosity is the major ultra-structural alteration occurring in archaeological bone

INTERNATIONAL JOURNAL OF OSTEOARCHAEOLOGY, Issue 6 2002
G. Turner-Walker
Abstract Total pore volume and pore size distribution are indicators of the degree of post-mortem modification of bone. Direct measurements of pore size distribution in archaeological bones using mercury intrusion porosimetry (HgIP) and back scattered scanning electron microscopy (BSE-SEM) reveal a common pattern in the changes seen in degraded bone as compared to modern samples. The estimates of pore size distribution from HgIP and direct measurement from the BSE-SEM images show remarkable correspondence. The coupling of these two independent approaches has allowed the diagenetic porosity changes in human archaeological bone in the >0.01 µm range to be directly imaged, and their relationship to pre-existing physiological pores to be explored. The increase in porosity in the archaeological bones is restricted to two discrete pore ranges. The smaller of these two ranges (0.007,0.1 µm) lies in the range of the collagen fibril (0.1 µm diameter) and is presumably formed by the loss of collagen, whereas the larger pore size distribution is evidence of direct microbial alteration of the bone. HgIP has great potential for the characterization of microbial and chemical alteration of bone. Copyright © 2002 John Wiley & Sons, Ltd. [source]

Tectonic control of bioalteration in modern and ancient oceanic crust as evidenced by carbon isotopes

ISLAND ARC, Issue 1 2006
Harald Furnes
Abstract We review the carbon-isotope data for finely disseminated carbonates from bioaltered, glassy pillow rims of basaltic lava flows from in situ slow- and intermediate-spreading oceanic crust of the central Atlantic Ocean (CAO) and the Costa Rica Rift (CRR). The ,13C values of the bioaltered glassy samples from the CAO show a large range, between ,17 and +3, (Vienna Peedee belemnite standard), whereas those from the CRR define a much narrower range, between ,17, and ,7,. This variation can be interpreted as the product of different microbial metabolisms during microbial alteration of the glass. In the present study, the generally low ,13C values (less than ,7,) are attributed to carbonate precipitated from microbially produced CO2 during oxidation of organic matter. Positive ,13C values >0, likely result from lithotrophic utilization of CO2 by methanogenic Archaea that produce CH4 from H2 and CO2. High production of H2 at the slow-spreading CAO crust may be a consequence of fault-bounded, high-level serpentinized peridotites near or on the sea floor, in contrast to the CRR crust, which exhibits a layer-cake pseudostratigraphy with much less faulting and supposedly less H2 production. A comparison of the ,13C data from glassy pillow margins in two ophiolites interpreted to have formed at different spreading rates supports this interpretation. The Jurassic Mirdita ophiolite complex in Albania shows a structural architecture similar to that of the slow-spreading CAO crust, with a similar range in ,13C values of biogenic carbonates. The Late Ordvician Solund,Stavfjord ophiolite complex in western Norway exhibits structural and geochemical evidence for evolution at an intermediate-spreading mid-ocean ridge and displays ,13C signatures in biogenic carbonates similar to those of the CRR. Based on the results of this comparative study, it is tentatively concluded that the spreading rate-dependent tectonic evolution of oceanic lithosphere has a significant control on the evolution of microbial life and hence on the ,13C biosignatures preserved in disseminated biogenic carbonates in glassy, bioaltered lavas. [source]

Nitrogen biomarkers and their fate in soil,

JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE, Issue 6 2003
Wulf Amelung
Abstract More than 90,% of the nitrogen (N) in soils can be organically bound, but the mechanisms and rates by which it is cycled have eluded researchers. The objective of this research was to contribute to a better understanding of the origin and transformation of soil organic N (SON) by using amino sugars and the enantiomers of amino acids as markers for microbial residues and/or aging processes. Studied samples presented here comprised (1) soil transects across different climates, (2) arable soils with different duration of cropping, and (3) radiocarbon-dated soil profiles. The results suggested that increased microbial alteration of SON temporarily results in a sequestration of N in microbial residues, which are mineralized at later stages of SON decomposition. Microorganisms increasingly sequestered N within intact cell wall residues as frost periods shortened. At a mean annual temperature above 12,15,°C, these residues were mineralized, probably due to limitations in additional substrates. Breaking the grassland for cropping caused rapid SON losses. Microbial residues were decomposed in preference to total N, this effect being enhanced at higher temperatures. Hence, climate and cultivation interactively affected SON dynamics. Nevertheless, not all SON was available to soil microorganisms. In soil profiles, L-aspartic acid and L-lysine slowly converted into their D-form, for lysine even at a similar rate in soils of different microbial activity. Formation of D-aspartate with time was, therefore, induced by microorganisms while that of D-lysine was not. The racemization of the two amino acids indicates that SON not available to microorganisms ages biotically and abiotically. In native soils, the latter is conserved for centuries, despite N deficiency frequently occurring in living terrestrial environments. Climate was not found to affect the fate of old protein constituents in surface soil. When native grassland was broken for cropping, however, old SON constituents had become available to microorganisms and were degraded. Stickstoff-Biomarker und ihre Dynamik im Boden Über 90,% des Stickstoffs im Boden können organisch gebunden sein. Um zu einem besseren Verständnis der Norg -Dynamik im Boden beitragen zu können, analysierte ich Aminozucker und Aminosäure-Enantiomere als Marker für mikrobielle N-Rückstände und/oder Alterungsprozesse von Norg im Boden. Das hier vorgestellte Untersuchungsmaterial umfasste (1) Bodentransekte entlang unterschiedlicher Klimate, (2) Ackerböden mit verschiedener Nutzungsdauer und (3) 14C-datierte Bodenprofile. Die Ergebnisse zeigten, dass mit fortschreitender Umwandlung des Norg mikrobielle N-Rückstände nur vorübergehend im Boden akkumulieren, da sie in späteren Abbauphasen wieder mineralisiert werden. Mikroorganismen bauten zunehmend N in intakte Zellwandrückstände ein, wenn sich die Frostperioden verkürzten. Bei einer Jahresmitteltemperatur über 12,15,°C sank der Beitrag mikrobieller Rückstände zum N-Gehalt, vermutlich weil Mikroorganismen diese mangels anderer Substrate verstärkt mineralisierten. Umbrüche von Gras- zu Ackerland führten zu raschen N-Verlusten. Mikrobielle N-Rückstände wurden bevorzugt abgebaut, ein Effekt, den höhere Temperaturen verstärkten. Demnach steuerte das Klima die Intensität von Nutzungseffekten auf die Norg -Dynamik. Doch nicht der gesamte Norg war für Mikroorganismen zugänglich. Der D-Gehalt von Asparaginsäure und Lysin nahm mit steigendem Alter der organischen Bodensubstanz zu, Lysin racemisierte in den verschiedenen Böden sogar mit gleicher Geschwindigkeit. Anders als die Bildung von D-Asparaginsäure wurde die von Lysin also nicht durch Mikroorganismen beeinflusst. Die Racemisierung der beiden Aminosäuren deutet deshalb darauf hin, dass nicht-bioverfügbare Norg -Bestandteile biotisch und abiotisch im Boden altern. Klimaeinwirkungen auf den Verbleib alter Proteinrückstände ließen sich nicht feststellen. Mit Umbruch von Gras- zu Ackerland erhielten Mikroorganismen allerdings Zugang zu alten Norg -Verbindungen und bauten diese ab. [source]