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Metapopulation Structure (metapopulation + structure)
Selected AbstractsMetapopulation ecology in the sea: from Levins' model to marine ecology and fisheries scienceFISH AND FISHERIES, Issue 2 2004Jacob P Kritzer Abstract Marine and fisheries scientists are increasingly using metapopulation concepts to better understand and model their focal systems. Consequently, they are considering what defines a metapopulation. One perspective on this question emphasizes the importance of extinction probability in local populations. This view probably stems from the focus on extinction in Levins' original metapopulation model, but places unnecessary emphasis on extinction,recolonization dynamics. Metapopulation models with more complex structure than Levins' patch-occupancy model and its variants allow a broader range of population phenomena to be examined, such as changes in population size, age structure and genetic structure. Analyses along these lines are critical in fisheries science, where presence,absence resolution is far too coarse to understand stock dynamics in a meaningful way. These more detailed investigations can, but need not, aim to assess extinction risk or deal with extinction-prone local populations. Therefore, we emphasize the coupling of spatial scales as the defining feature of metapopulations. It is the degree of demographic connectivity that characterizes metapopulations, with the dynamics of local populations strongly dependent upon local demographic processes, but also influenced by a nontrivial element of external replenishment. Therefore, estimating rates of interpopulation exchange must be a research priority. We contrast metapopulations with other spatially structured populations that differ in the degree of local closure of their component populations. We conclude with consideration of the implications of metapopulation structure for spatially explicit management, particularly the design of marine protected area networks. [source] Common sex-linked deleterious alleles in a plant parasitic fungus alter infection success but show no pleiotropic advantageJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 3 2006T. GIRAUD Abstract Microbotryum violaceum is a fungus that causes the sterilizing anther smut disease in Caryophyllaceae. Its diploid teliospores normally produce equal proportions of haploid sporidia of its two mating types. However natural populations contain high frequencies of individuals producing sporidia of only one mating type (,biased strains'). This mating type-ratio bias is caused by deleterious alleles at haploid phase (,haplo-lethals') linked to the mating type locus that can be transmitted only by intra-tetrad selfing. We used experimental inoculations to test some of the hypotheses proposed to explain the maintenance of haplo-lethals. We found a disadvantage of biased strains in infection ability and high intra-tetrad mating rates. Biased strains had no higher competitive ability nor shorter latency and their higher spore production per flower appeared insufficient to compensate their disadvantages. These findings were only consistent with the hypothesis that haplo-lethals are maintained under a metapopulation structure because of high intra-tetrad selfing rates, founder effects and selection at the population level. [source] Support for a metapopulation structure among mammalsMAMMAL REVIEW, Issue 3 2009PIETER I. OLIVIER ABSTRACT 1The metapopulation metaphor is increasingly used to explain the spatial dynamics of animal populations. However, metapopulation structure is difficult to identify in long-lived species that are widely distributed in stochastic environments, where they can resist extinctions. The literature on mammals may not provide supporting evidence for classic metapopulation dynamics, which call for the availability of discrete habitat patches, asynchrony in local population dynamics, evidence for extinction and colonization processes, and dispersal between local populations. 2Empirical evidence for metapopulation structure among mammals may exist when applying more lenient criteria. To meet these criteria, mammals should live in landscapes as discrete local breeding populations, and their demography should be asynchronous. 3We examined the literature for empirical evidence in support of the classical criteria set by Hanski (1999), and for the more lenient subset of criteria proposed by Elmhagen & Angerbjörn (2001). We suggest circumstances where metapopulation theory could be important in understanding population processes in mammals of different body sizes. 4The patchy distribution of large (>100 kg) mammals and dispersal often motivate inferences in support of a metapopulation structure. Published studies seldom address the full suite of classical criteria. However, studies on small mammals are more likely to record classic metapopulation criteria than those on large mammals. The slow turnover rate that is typical for medium-sized and large mammals apparently makes it difficult to identify a metapopulation structure during studies of short duration. 5To identify a metapopulation structure, studies should combine the criteria set by Hanski (1999) and Elmhagen & Angerbjörn (2001). Mammals frequently live in fragmented landscapes, and processes involved in the maintenance of a metapopulation structure should be considered in conservation planning and management. [source] Genome scan in the mosquito Aedes rusticus: population structure and detection of positive selection after insecticide treatmentMOLECULAR ECOLOGY, Issue 2 2010MARGOT PARIS Abstract Identification of genes involved in local adaptation is particularly challenging for species functioning as a network of interconnected populations undergoing frequent extinctions,recolonizations, because populations are submitted to contrasted evolutionary pressures. Using amplified fragment length polymorphism markers, population genetic structure of the mosquito Aedes rusticus was analysed in five geographical areas of the French Rhône-Alpes region. We included a number of sites that were treated with the bio-insecticide Bacillus thuringiensis israelensis (Bti) for more than 15 years. Analysis of molecular variance revealed that most of the genetic variability was found within populations (96%), with no significant variation among geographical areas, although variation among populations within areas (4%) was significant. The global genetic differentiation index FST was low (0.0366 ± 0.167). However, pairwise FST values were significant and no isolation-by-distance at the regional level was observed, suggesting a metapopulation structure in this species. Bti -treatment had no effect on genetic structure and on within-population genetic diversity. Potential signatures of positive selection associated with Bti -treatment were detected for five loci, even though toxicological bioassays performed on field-collected larvae showed no significant difference in mortality between Bti -treated and nontreated sites. The difficulty of detecting moderate resistance in field-collected larvae together with possible differential persistence of toxins in the environment may explain our inability to detect a toxicological response to Bti in treated sites. The evidence for positive selection occurring at several genomic regions suggests a first step towards Bti resistance in natural mosquito populations treated with this bio-insecticide. Furthermore, this signal was detectable using genomic tools before any toxicological evidence for resistance could be identified. [source] High population differentiation and unusual haplotype structure in a shade-intolerant pioneer tree species, Zanthoxylum ailanthoides (Rutaceae) revealed by analysis of DNA polymorphism at four nuclear lociMOLECULAR ECOLOGY, Issue 10 2008K. KAMIYA Abstract Differences in demographic history, life-history traits, and breeding systems affect nucleotide variation patterns. It is expected that shade-intolerant pioneer tree species have different patterns of genetic polymorphism and population structure than climax species. We studied patterns of nucleotide polymorphism at four putative starch pathway loci (agpSA, agpSB, agpL, and GBSSI) in Zanthoxylum ailanthoides, a shade-intolerant pioneer tree species that occupies forest gaps in warm-temperate forests of East Asia. Genetic diversity was lower within each population than among populations, and differentiation among populations was high across the loci (FST = 0.32,0.64), as expected from the insect-pollinated breeding system and the metapopulation structure of this pioneer species. Numbers of haplotypes were smaller than those expected from the observed numbers of segregating sites. Single haplotypes accounted for more than 47% of all the sampled genes at the respective loci. These variation patterns were incompatible with neutral predictions for populations of a finite island model. Complex population dynamics, such as bottleneck and/or admixture, in the history of this pioneer tree species might have resulted in the observed patterns of genetic variation and population structure, which are different from those of climax wind-pollinated tree species, such as conifers. In contrast to the other loci investigated in this study, agpL showed nearly no variation in Z. ailanthoides (one singleton only), but there was some extent of variation in a closely related species, Zanthoxylum schinifolium. This suggests possibly a recent selective sweep at or near the locus in Z. ailanthoides. [source] Genetic data in population viability analysis: case studies with ambystomatid salamandersANIMAL CONSERVATION, Issue 2 2010K. R. Greenwald Abstract Parameterization of population viability models is a complicated task for most types of animals, as knowledge of population demography, abundance and connectivity can be incomplete or unattainable. Here I illustrate several ways in which genetic data can be used to inform population viability analysis, via the parameterization of both initial abundance and dispersal matrices. As case studies, I use three ambysomatid salamander datasets to address the following question: how do population viability predictions change when dispersal estimates are based on genetic assignment test data versus a general dispersal,distance function? Model results showed that no local population was large enough to ensure long-term persistence in the absence of immigration, suggesting a metapopulation structure. Models parameterized with a dispersal,distance function resulted in much more optimistic predictions than those incorporating genetic data in the dispersal estimates. Under the dispersal,distance function scenario all local populations persisted; however, using genetic assignments to infer dispersal revealed local populations at risk of extinction. Viability estimates based on dispersal,distance functions should be interpreted with caution, especially in heterogeneous landscapes. In these situations I promote the idea of model parameterization using genetic assignment tests for a more accurate portrayal of real-world dispersal patterns. [source] Temporal patterns of geographic parthenogenesis in a freshwater snailBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 4 2007FRIDA BEN-AMI Geographic parthenogenesis describes the observation that parthenogenetic organisms tend to occupy environments different from those of their close, sexually reproducing relatives. These environments are often described as extreme or disturbed habitats. We examined whether patterns of geographical parthenogenesis persist over time, by conducting a 3-year life-history survey and comparing two very proximate habitats of the freshwater snail Melanoides tuberculata: Nahal Arugot, a desert stream naturally disturbed by flash floods, and Or Ilan, a stable freshwater pond. Both sites occur in a xeric environment and are subject to otherwise similar biotic (e.g. parasites, predators) and climatic conditions. In the stable habitat, male frequencies and snail densities were significantly higher than in the disturbed one, whereas infection levels, mean embryo counts, and water temperatures were similar at both sites. Additionally, male frequencies declined after density decreased, thereby providing evidence for geographical parthenogenesis via reproductive assurance. Infection prevalence was very low regardless of reproduction mode. Although further genetic work is required, the apparent metapopulation structure of M. tuberculata in the Judean desert may be suitable for evaluating other possible explanations of geographical parthenogenesis. © 2007 The Linnean Society of London, Biological Journal of the Linnean Society, 2007, 91, 711,718. [source] Host plants and butterfly biology.ECOLOGICAL ENTOMOLOGY, Issue 1 2004Do host-plant strategies drive butterfly status? Abstract., 1.,To determine whether rarity and decline is linked to organism ecology, associations have been examined between butterfly larval host-plant competitive, stress-tolerant, ruderal (C-S-R) strategies and butterfly biology. 2.,Associations have been sought between mean C-S-R scores for larval host plants with butterfly life history, morphology and physiology variables, resource use, population attributes, geography, and conservation status. Comparisons are carried out across species and controlled for phylogenetic patterning. 3.,Butterfly biology is linked to host-plant strategies. An increasing tendency of a butterfly's host plants to a particular strategy biases that butterfly species to functionally linked life-history attributes and resource breadth and type. In turn, population attributes and geography are significantly and substantially affected by host choice and the strategies of these host plants. 4.,The greatest contrast is between butterfly species whose host plants are labelled C and R strategists and those whose host plants are labelled S strategists. Increasingly high host-plant C and R strategy scores bias butterflies to rapid development, short early stages, multivoltinism, long flight periods, early seasonal emergence, higher mobility, polyphagy, wide resource availability and biotope occupancy, open, areally expansive, patchy population structures, denser distributions, wider geographical ranges, resistance to range retractions as well as to increasing rarity in the face of environmental changes. Increasing host-plant S strategy scores have reversed tendencies, biasing those butterfly species to extended development times, fewer broods, short flight periods, smaller wing expanse and lower mobility, monophagy, restricted resource exploitation and biotope occupancy, closed, areally limited populations with typical metapopulation structures, sparse distributions, and limited geographical ranges, range retractions, and increased rarity. 5.,Species with S strategy host plants are species vulnerable to current environmental changes and species of conservation concern. [source] | ||||||||||