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Mean Heterozygosity (mean + heterozygosity)
Selected AbstractsReproductive modes and genetic polymorphism in the tardigrade Richtersius coronifer (Eutardigrada, Macrobiotidae)INVERTEBRATE BIOLOGY, Issue 1 2003Lorena Rebecchi Abstract. Allozymes were assessed by starch gel electrophoresis in 3 populations of a eutardigrade, Richtersius coronifer, with different reproductive modes. One population from Italy (with 2 sub-populations) was amphimictic and 2 populations (1 from Italy and 1 from Sweden) were parthenogenetic. All populations, irrespective of their reproductive mode, were diploid with the same chromosome number (2n=12) and had bivalents in the oocytes. Of the 14 loci analyzed, only 3 were polymorphic. The amphimictic population had a higher degree of genetic variability (mean heterozygosity >0.25) than the parthenogenetic populations (mean heterozygosity of the 2 populations <0.01). In all female populations, allele frequencies at all 3 loci deviated from Hardy-Weinberg equilibria due to heterozygote deficiency. These results support a hypothesis of automictic parthenogenesis in R. coronifer. [source] Can low densities of carnivores result in genetic depletion?JOURNAL OF ANIMAL BREEDING AND GENETICS, Issue 3 2006An investigation within French polecat populations Summary Carnivores as top predators are commonly found in relatively low densities even in optimal habitats. Despite a lack of empirical studies, it could be suspected that long-term low density could result in genetic depletion. The genetic structure of European polecat Mustela putorius natural populations was investigated by allozyme electrophoresis in five distinct areas. Density estimates significantly differed among sites from 0.17 to 0.83 individuals/km2 with an average of 0.56 individuals per km2, resulting in a scattered distribution. Genetic structure varied among distinct populations both in number of polymorphic loci and heterozygosity. Polecats from Brittany revealed a very low observed heterozygosity (HO = 0.028) whereas mean heterozygosity reached HO = 0.072 in Bričre. That the lowest heterozygosity levels and highest inbreeding coefficient FIS were significantly associated with the lowest densities suggests that low densities may affect populations of carnivores. Both the loss of polymorphic loci and the reduction in heterozygosity rates suggest a density-dependent effect and population density can be arguably regarded as a factor affecting genetic diversity in top carnivores. [source] Microsatellites assessment of Chinese sturgeon (Acipenser sinensis Gray) genetic variabilityJOURNAL OF APPLIED ICHTHYOLOGY, Issue 1 2005N. Zhao Summary Four microsatellites were used to examine the genetic variability of the spawning stocks of Chinese sturgeon, Acipenser sinensis, from the Yangtze River sampled over a 3-year period (1999,2001). Within 60 individuals, a total of 28 alleles were detected over four polymorphic microsatellite loci. The number of alleles per locus ranged from 4 to 15, with an average allele number of 7. The number of genotypes per locus ranged from 6 to 41. The genetic diversity of four microsatellite loci varied from 0.34 to 0.67, with an average value of 0.54. For the four microsatellite loci, the deviation from the Hardy,Weinberg equilibrium was mainly due to null alleles. The mean number of alleles per locus and the mean heterozygosity were lower than the average values known for anadromous fishes. Fish were clustered according to their microsatellite characteristics using an unsupervised ,Artificial Neural Networks' method entitled ,Self-organizing Map'. The results revealed no significant genetic differentiation considering genetic distance among samples collected during different years. Lack of heterogeneity among different annual groups of spawning stocks was explained by the complex age structure (from 8 to 27 years for males and 12 to 35 years for females) of Chinese sturgeon, leading to formulate an hypothesis about the maintenance of genetic diversity and stability in long-lived animals. [source] Stocking-related patterns of genetic variation at enzymatic loci in south European Atlantic salmon populationsJOURNAL OF FISH BIOLOGY, Issue 2005P. Morán Genetic variation at 24 enzymatic loci was investigated in eight south European Atlantic salmon populations from the rivers Nivelle, Cares, Sella, Narcea, Esva, Navia, Porcia and Eo. In these rivers, management based on supplementation of native populations with foreign stocks was carried out for more than one decade. Population genetic patterns expressed in terms of allele frequencies, mean heterozygosity and conformity to Hardy-Weinberg equilibrium, were significantly different between populations. Relevant temporal changes of genetic variability were reported. Evidence that foreign stocking has disturbed the genetic patterns of some of the studied populations is presented. [source] Microsatellite loci for Ponto-Caspian gobies: markers for assessing exotic invasionsMOLECULAR ECOLOGY RESOURCES, Issue 2 2009KEVIN A. FELDHEIM Abstract We developed and tested eight polymorphic microsatellite loci for Ponto-Caspian ,neogobiin' gobies, many of which are invasive in Eurasia and North America, whose study will aid understanding of the population genetics underlying their success. We tested samples from one to two locations from 12 taxa in the recently revised genera Babka, Benthophilus, Mesogobius, Neogobius = Apollonia, Ponticola and Proterorhinus; including the bighead, Caspian, knout, monkey, racer, round, tadpole and tubenose gobies; and taxa from introduced vs. native populations, those diverging between fresh and marine waters, and those differentiated between the Black and Caspian Seas. Populations conformed to Hardy,Weinberg equilibrium expectations, averaging five to 15 alleles per locus and 0.11 to 0.67 mean heterozygosity. Allelic variation significantly differentiated among all taxa and populations. [source] Novel polymorphic microsatellite markers for paternity analysis in the red-capped robin (Petroica goodenovii: Aves)MOLECULAR ECOLOGY RESOURCES, Issue 4 2003D. K. Dowling Abstract Seven microsatellite loci were isolated and characterized from the red-capped robin Petroica goodenovii, using nonradioactive polymerase chain reaction (PCR)-based techniques to screen an enriched genomic library. Five loci showed no evidence of null alleles and were variable [mean heterozygosity (HE) = 0.440, mean number of alleles = 8]. Cross-amplification using primers for microsatellites in Phylloscopus occipitalis and Emberiza schoeniclus yielded another two polymorphic loci. The combined set of five red-capped robin and two cross-amplified loci are suitable for paternity assignment (exclusion probability for seven unlinked loci = 0.9760). [source] Isolation of microsatellite markers in Cannabis sativa L. (marijuana)MOLECULAR ECOLOGY RESOURCES, Issue 1 2003S. Gilmore Abstract We have identified 15 variable microsatellite loci in Cannabis sativa. In 48 samples from five fibre crop seed accessions, we detected an average of 10 alleles per locus (range 2,28) with mean heterozygosity of 0.68 (range 0.28,0.94). Significant genetic differentiation was found between accessions (FST = 0.12, P < 0.001). These markers have utility for characterizing genetic diversity in cultivated and naturalized Cannabis populations. [source] Tracking the decline of the once-common butterfly: delayed oviposition, demography and population genetics in the hermit Chazara briseisANIMAL CONSERVATION, Issue 2 2010T. Kadlec Abstract Large populations, seemingly not at risk of extinction, can decline rapidly due to alteration of habitat. This appears to be the case of the butterfly Chazara briseis, which is declining in all of Central and Eastern Europe, even from apparently large areas of its steppe grassland habitats. We combined mark,recapture, allozyme electrophoresis and adult behaviour observation to study the last remaining metapopulation of this once-widespread butterfly in the Czech Republic. The total population estimate was 1300 males and 1050 females in 10 colonies within a 70 km2 landscape. Adults were long-lived, and inseminated females required several weeks before they started ovipositing. Models using realistic lengths of the preoviposition period estimated that due to background mortality, only 25,55% of the female census population lived long enough to contribute to the next generation. This demographic load was unlikely to be balanced by an increased fecundity. Allozyme electrophoresis of 22 loci revealed much higher allelic variation than in most other studies of butterflies living in small populations (mean heterozygosity: 20.7%). If expressed as per individual colony, the genetic variation did not correlate with population density, survival or longevity. This was probably due to frequent movements among colonies; during 8 weeks of adult flight, 5.1% of recaptured males and 3.6% of recaptured females moved between colonies. The high preoviposition mortality indicates that populations of this species must contain more individuals compared with populations not suffering this additional demographic load. The high allelic diversity of each single colony suggests that the population as a whole has not undergone genetic bottlenecks, but now may be facing risks of inbreeding depression due to allele frequency shifts and the possible increase of weakly deleterious alleles. In the past, high effective population sizes were maintained by frequent dispersal in dense networks of steppic grasslands. Generous habitat restoration is necessary to safeguard populations of this specialized, yet formerly common species. [source] Twenty-eight new microsatellite loci in chicken and their cross-species amplification in Japanese quail and helmeted guinea fowlANIMAL SCIENCE JOURNAL, Issue 4 2003Boniface Baboreka KAYANG ABSTRACT Twenty-eight original chicken microsatellite markers were isolated and characterized to determine their utility as cross-reactive markers for comparative genetic mapping in the order Galliformes. Primer pairs were typed in 12 unrelated chickens and also tested on Japanese quail and helmeted guinea fowl deoxyribonucleic acid (DNA). Polymorphism was observed in 23 (82.1%) of the markers and the average number of alleles per locus was 2.9 while the mean heterozygosity was 0.19. Eleven (39.3%) of the chicken markers cross-reacted with Japanese quail DNA and 2 (7.1%) with helmeted guinea fowl DNA. The cross-reactive markers described would serve as useful resources for comparative genetic mapping in poultry species belonging to the order Galliformes. [source] Differentiation of Caucasians and Chinese at Bone Mass Candidate Genes: Implication for Ethnic Difference of Bone MassANNALS OF HUMAN GENETICS, Issue 3 2003V. Dvornyk Summary Bone mineral density (BMD) is an important risk factor for osteoporosis and has strong genetic determination. While average BMD differs among major ethnic groups, several important candidate genes have been shown to underlie BMD variation within populations of the same ethnicity. To investigate whether important candidate genes may contribute to ethnic differences in BMD, we studied the degree of genetic differentiation among several important candidate genes between two major ethnic groups: Caucasians and Chinese. The genetic variability of these two populations (1131 randomly selected individuals) was studied at six restriction sites exhibiting polymorphisms of five important candidate genes for BMD: the BsaHI polymorphism of the calcium-sensing receptor (CASR) gene, the SacI polymorphism of the ,2HS-glycoprotein (AHSG) gene, the PvuII and XbaI polymorphisms of the estrogen receptor , (ESR1) gene, the ApaI polymorphism of the vitamin D receptor (VDR) gene, and the BstBI polymorphism of the parathyroid hormone (PTH) gene. The two ethnic groups showed significant allelic and genotypic differentiation of all the polymorphisms studied. The mean FST was 0.103, which significantly differed from zero (P < 0.01). The Chinese population had lower mean heterozygosity (0.331) than the Caucasian one (0.444); the CASR - BsaHI and PTH - BstBI polymorphisms contributed most significantly to this difference. Analysis of the intra- and inter-population variability suggests that various types of natural selection may affect the observed patterns of variation at some loci. If some of the candidate genes we studied indeed underlie variation in BMD, their population differentiation revealed here between ethnic groups may contribute to understanding ethnic difference in BMD. [source] | |||||||||||||