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Methanotrophic Bacteria (methanotrophic + bacteria)
Selected AbstractsPristine New Zealand forest soil is a strong methane sinkGLOBAL CHANGE BIOLOGY, Issue 1 2004Sally J. Price Abstract Methanotrophic bacteria oxidize methane (CH4) in forest soils that cover ,30% of Earth's land surface. The first measurements for a pristine Southern Hemisphere forest are reported here. Soil CH4 oxidation rate averaged 10.5±0.6 kg CH4 ha,1 yr,1, with the greatest rates in dry warm soil (up to 17 kg CH4 ha,1 yr,1). Methanotrophic activity was concentrated beneath the organic horizon at 50,100 mm depth. Water content was the principal regulator of (r2=0.88) from the most common value of field capacity to less than half of this when the soil was driest. Multiple linear regression analysis showed that soil temperature was not very influential. However, inverse co-variability confounded the separation of soil water and temperature effects in situ. Fick's law explained the role of water content in regulating gas diffusion and substrate supply to the methanotrophs and the importance of pore size distribution and tortuosity. This analysis also showed that the chambers used in the study did not affect the oxidation rate measurements. The soil was always a net sink for atmospheric CH4 and no net CH4 (or nitrous oxide, N2O) emissions were measured over the 17-month long study. For New Zealand, national-scale extrapolation of our data suggested the potential to offset 13% of CH4 emissions from ca. 90 M ruminant animals. Our average was about 6.5 times higher than rates reported for most Northern Hemisphere forest soils. This very high was attributed to the lack of anthropogenic disturbance for at least 3000,5000 years and the low rate of atmospheric nitrogen deposition. Our truly baseline data could represent a valid preagricultural, preindustrial estimate of the soil sink for temperate latitudes. [source] Sources for sedimentary bacteriohopanepolyols as revealed by 16S rDNA stratigraphyENVIRONMENTAL MICROBIOLOGY, Issue 7 2008Marco J. L. Coolen Summary Bacteriohopanoids are widespread lipid biomarkers in the sedimentary record. Many aerobic and anaerobic bacteria are potential sources of these lipids which sometimes complicates the use of these biomarkers as proxies for ecological and environmental changes. Therefore, we applied preserved 16S ribosomal RNA genes to identify likely Holocene biological sources of bacteriohopanepolyols (BHPs) in the sulfidic sediments of the permanently stratified postglacial Ace Lake, Antarctica. A suite of intact BHPs were identified, which revealed a variety of structural forms whose composition differed through the sediment core reflecting changes in bacterial populations induced by large changes in lake salinity. Stable isotopic compositions of the hopanols formed from periodic acid-cleaved BHPs, showed that some were substantially depleted in 13C, indicative of their methanotrophic origin. Using sensitive molecular tools, we found that Type I and II methanotrophic bacteria (respectively Methylomonas and Methylocystis) were unique to the oldest lacustrine sediments (> 9400 years BP), but quantification of fossil DNA revealed that the Type I methanotrophs, including methanotrophs related to methanotrophic gill symbionts of deep-sea cold-seep mussels, were the main precursors of the 35-amino BHPs (i.e. aminopentol, -tetrol and -triols). After isolation of the lake ,3000 years ago, one Type I methanotroph of the ,methanotrophic gill symbionts cluster' remained the most obvious source of aminotetrol and -triol. We, furthermore, identified a Synechococcus phylotype related to pelagic freshwater strains in the oldest lacustrine sediments as a putative source of 2-methylbacteriohopanetetrol (2-Me BHT). This combined application of advanced geochemical and paleogenomical tools further refined our knowledge about Holocene biogeochemical processes in Ace Lake. [source] Stability and detection of ,-pinene oxide in aqueous culture mediumENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 9 2000Kimberly K. Kajihara Abstract Methane consumption by methanotrophic bacteria was previously shown to be temporarily inhibited by ,-pinene. Based on literature considerations, loss of inhibition may be due to bacterial degradation of the monoterpene to ,-pinene oxide, an anticipated metabolite. However, since ,-pinene oxide is unstable in aqueous media, detection of its production by methanotrophs or other bacteria is problematic. Therefore, we used gas chromatography-mass spectrometry analysis to study the chemical breakdown of ,-pinene oxide in various buffer systems (Tris[hydroxymethyl]am inomethane, 3-[N-morpholino]propanesulfonic acid, phosphate; pH 7-9) suitable for bacterial whole-cell and cell-free experiments. In every case, aqueous phase ,-pinene oxide was unstable and its disappearance was accompanied by the appearance of five decomposition products in a characteristic fingerprint that was in part buffer dependent. However, this fingerprint was adequately stable in phosphate buffer such that its appearance could be used to infer the intermediacy of ,-pinene oxide if produced by the bacteria at or near their optimal pH. [source] Cultivation of methanotrophic bacteria in opposing gradients of methane and oxygenFEMS MICROBIOLOGY ECOLOGY, Issue 3 2006Ingeborg Bussmann Abstract In sediments, methane-oxidizing bacteria live in opposing gradients of methane and oxygen. In such a gradient system, the fluxes of methane and oxygen are controlled by diffusion and consumption rates, and the rate-limiting substrate is maintained at a minimum concentration at the layer of consumption. Opposing gradients of methane and oxygen were mimicked in a specific cultivation set-up in which growth of methanotrophic bacteria occurred as a sharp band at either c. 5 or 20 mm below the air-exposed end. Two new strains of methanotrophic bacteria were isolated with this system. One isolate, strain LC 1, belonged to the Methylomonas genus (type I methantroph) and contained soluble methane mono-oxygenase. Another isolate, strain LC 2, was related to the Methylobacter group (type I methantroph), as determined by 16S rRNA gene and pmoA sequence similarities. However, the partial pmoA sequence was only 86% related to cultured Methylobacter species. This strain accumulated significant amounts of formaldehyde in conventional cultivation with methane and oxygen, which may explain why it is preferentially enriched in a gradient cultivation system. [source] Comparison of the microbial population dynamics and phylogenetic characterization of a CANOXIS reactor and a UASB reactor degrading trichloroetheneJOURNAL OF APPLIED MICROBIOLOGY, Issue 2 2005O. Tresse Abstract Aims:, To understand the microbial ecology underlying trichloethene (TCE) degradation in a coupled anaerobic/aerobic single stage (CANOXIS) reactor oxygenated with hydrogen peroxide (H2O2) and in an upflow anaerobic sludge bed (UASB) reactor. Methods and Results:, The molecular study of the microbial population dynamics and a phylogenetic characterization were conducted using polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE). In both reactors, TCE had a toxic effect on two uncultured bacterial populations whereas oxygen favoured the growth of aerobic species belonging to Rhizobiaceae and Dechloromonas. No methanotrophic bacteria were detected when targeting 16S rRNA gene with universal primers. Alternatively, pmo gene encoding the particulate methane monooxygenase of Methylomonas sp. LW21 could be detected in the coupled reactor when H2O2 was supplied at 0·7 g O2 l day,1. Conclusions:,Methylomonas sp. LW21 that could be responsible for the aerobic degradation of the TCE by-products is not among the predominant bacterial populations in the coupled reactor. It seems to have been outcompeted by heterotrophic bacteria (Rhizobiaceae and Dechloromonas sp.) for oxygen. Significance and Impact of the Study:, The results obtained show the limitations of the coupled reactor examined in this study. Further investigations should focus on the operating conditions of this reactor in order to favour the growth of the methanotrophs. [source] Screening for soluble methane monooxygenase in methanotrophic bacteria using combined molecular and biochemical methods for hydroxylase detectionJOURNAL OF BASIC MICROBIOLOGY, Issue 1 2003Stephan Grosse Dr. Three well known methanotrophic bacteria (Methylosinus trichosporium OB3b, Methylocystis sp. WI 14, and Methylocystis sp. GB 25) and three newly isolated methanotrophic bacteria (Methylocystis sp. WI 11, Methylocystis sp. X, and FI-9) were screened for sMMO considering the existence of hydroxylase (component A) genes as well as its gene expression. For these purposes monoclonal antibodies that specifically recognize each subunit of the hydroxylase of Methylocystis sp. WI 14 (, -subunit [9E5/F2], , -subunit [4E2/G11], , -subunit [10G3/D7]) were produced. PCR amplification using well known primers showed that the hydroxylase encoding genes appear to be only present in M. trichosporium OB3b, Methylocystis sp. WI 11 and WI 14, and in the isolate FI-9. Western and ELISA analysis using the monoclonal antibodies revealed that all subunits of hydroxylase were present. However, in FI-9, only the , -subunit of the hydroxylase might be expressed. Surprisingly, in Methylocystis sp. GB 25, where no sMMO activity and no amplification with sMMO specific primers was obtained, the antibody 4E2/G11 recognized a protein band with exactly the same molecular mass as the , -subunit of the hydroxylase. Methylocystis sp. X showed no positive reaction in any of the tests. In combination with the detection methods currently used, the described antibodies provide a powerful tool for detecting even partially expressed hydroxylase genes. [source] A trophic pathway from biogenic methane supports fish biomass in a temperate lake ecosystemOIKOS, Issue 2 2010Mark Ravinet Although some primary consumers such as chironomid larvae are known to exploit methane-derived carbon via microbial consortia within aquatic food webs, few studies have traced the onward transfer of such carbon to their predators. The ruffe Gymnocephalus cernuus is a widespread benthivorous fish which feeds predominantly on chironomid larvae and is well adapted for foraging at lower depths than other percids. Therefore, any transfer of methanogenic carbon to higher trophic levels might be particularly evident in ruffe. We sampled ruffe and chironomid larvae from the littoral, sub-littoral and profundal areas of Jyväsjärvi, Finland, a lake which has previously been shown to contain chironomid larvae exhibiting the very low stable carbon isotope ratios indicative of methane exploitation. A combination of fish gut content examination and stable isotope analysis was used to determine trophic linkages between fish and their putative prey. Irrespective of the depth from which the ruffe were caught, their diet was dominated by chironomids and pupae although the proportions of taxa changed. Zooplankton made a negligible contribution to ruffe diet. A progressive decrease in ,13C and ,15N values with increasing water column depth was observed for both chironomid larvae and ruffe, but not for other species of benthivorous fish. Furthermore, ruffe feeding at greater depths were significantly larger than those feeding in the littoral, suggesting an ontogenetic shift in habitat use, rather than diet, as chironomids remained the predominant prey item. The outputs from isotope mixing models suggested that the incorporation of methane-derived carbon to larval chironomid biomass through feeding on methanotrophic bacteria increased at greater depth, varying from 0% in the littoral to 28% in the profundal. Using these outputs and the proportions of littoral, sub-littoral or profundal chironomids contributing to ruffe biomass, we estimated that 17% of ruffe biomass in this lake was ultimately derived from chemoautotrophic sources. Methanogenic carbon thus supports considerable production of higher trophic levels in lakes. [source] | ||||||||||