MOLECULAR INFORMATICS, Issue 6-7 2010
MLR Studies on 158 Cycloalkyl-Pyranones
Abstract Two parallel approaches for quantitative structure-activity relationships (QSAR) are predominant in literature, one guided by mechanistic methods (including read-across) and another by the use of statistical methods. To bridge the gap between these two approaches and to verify their main differences, a comparative study of mechanistically relevant and statistically relevant QSAR models, developed on a case study of 158 cycloalkyl-pyranones, biologically active on inhibition (Ki) of HIV protease, was performed. Firstly, Multiple Linear Regression (MLR) based models were developed starting from a limited amount of molecular descriptors which were widely proven to have mechanistic interpretation. Then robust and predictive MLR models were developed on the same set using two different statistical approaches unbiased of input descriptors. Development of models based on Statistical I method was guided by stepwise addition of descriptors while Genetic Algorithm based selection of descriptors was used for the Statistical II. Internal validation, the standard error of the estimate, and Fisher's significance test were performed for both the statistical models. In addition, external validation was performed for Statistical II model, and Applicability Domain was verified as normally practiced in this approach. The relationships between the activity and the important descriptors selected in all the models were analyzed and compared. It is concluded that, despite the different type and number of input descriptors, and the applied descriptor selection tools or the algorithms used for developing the final model, the mechanistical and statistical approach are comparable to each other in terms of quality and also for mechanistic interpretability of modelling descriptors. Agreement can be observed between these two approaches and the better result could be a consensus prediction from both the models. [source]

A mathematical and statistical framework for modelling dispersal

OIKOS, Issue 6 2007
Tord Snäll
Mechanistic and phenomenological dispersal modelling of organisms has long been an area of intensive research. Recently, there has been an increased interest in intermediate models between the two. Intermediate models include major mechanisms that affect dispersal, in addition to the dispersal curve of a phenomenological model. Here we review and describe the mathematical and statistical framework for phenomenological dispersal modelling. In the mathematical development we describe modelling of dispersal in two dimensions from a point source, and in one dimension from a line or area source. In the statistical development we describe applicable observation distributions, and the procedures of model fitting, comparison, checking, and prediction. The procedures are also demonstrated using data from dispersal experiments. The data are hierarchically structured, and hence, we fit hierarchical models. The Bayesian modelling approach is applied, which allows us to show the uncertainty in the parameter estimates and in predictions. Finally, we show how to account for the effect of wind speed on the estimates of the dispersal parameters. This serves as an example of how to strengthen the coupling in the modelling between the phenomenon observed in an experiment and the underlying process , something that should be striven for in the statistical modelling of dispersal. [source]

ChemInform Abstract: Activation of Fmoc-Protected N,O-Acetals Using Trimethylsilyl Halides: Mechanistic and Synthetic Studies.

CHEMINFORM, Issue 40 2010
Nicholas C. Boaz
Abstract Treatment of the Fmoc-protected amino alcohol (II), a "so-called" N,O-acetal, with TmsCl results in formation of a chloromethylcarbamate intermediate, which reacts with enamines to give ,-amino ketenes and aldehydes. [source]

ChemInform Abstract: [Ir(COD)Cl]2 as a Catalyst Precursor for the Intramolecular Hydroamination of Unactivated Alkenes with Primary Amines and Secondary Alkyl- or Arylamines: A Combined Catalytic, Mechanistic, and Computational Investigation.

CHEMINFORM, Issue 28 2010
Kevin D. Hesp
Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a "Full Text" option. The original article is trackable via the "References" option. [source]

Mechanistic and Stereochemical Aspects of the Asymmetric Cyclocarbonylation of 1,6-Enynes with Rhodium Catalysts.

CHEMINFORM, Issue 12 2005
Thomas M. Schmid
Abstract For Abstract see ChemInform Abstract in Full Text. [source]

ChemInform Abstract: Synthesis of 19-Oxygenated 4,,5,-Epoxy Derivatives of 16,-Hydroxyandrostenedione as Mechanistic and Catalytic Probes for Aromatase Reaction.

CHEMINFORM, Issue 6 2001
Mitsuteru Numazawa
Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a "Full Text" option. The original article is trackable via the "References" option. [source]

Evolution of advertisement signals in North American hylid frogs: vocalizations as end-products of calling behavior

CLADISTICS, Issue 6 2006
Tony Robillard
We studied the advertisement signals in two clades of North American hylid frogs in order to characterize the relationships between signal acoustic structure and underlying behavior. A mismatch was found between the acoustic structure and the mechanism of sound production. Two separate sets of phylogenetic characters were coded following acoustic versus mechanistic criteria, and exploratory treatments were made to compare their respective phylogenetic content in comparison with the molecular phylogeny (Faivovich et al., 2005). We discuss the consequences of the acoustic/mechanistic mismatch in terms of significance of acoustic characters for phylogenetic and comparative studies; and the evolution of vocalizations in North American treefrogs. Considering only the acoustic structure of frog vocalizations can lead to misleading results in terms of both phylogenetic signal and evolution of vocalizations. In contrast, interpreting the acoustic signals with regard to the mechanism of sound production results in consistent phylogenetic information. The mechanistic coding also provides strong homologies for use in comparative studies of frog vocalizations, and to derive and test evolutionary hypotheses. © The Willi Hennig Society 2005. [source]

Correlative and mechanistic models of species distribution provide congruent forecasts under climate change

CONSERVATION LETTERS, Issue 3 2010
Michael R. Kearney
Abstract Good forecasts of climate change impacts on extinction risks are critical for effective conservation management responses. Species distribution models (SDMs) are central to extinction risk analyses. The reliability of predictions of SDMs has been questioned because models often lack a mechanistic underpinning and rely on assumptions that are untenable under climate change. We show how integrating predictions from fundamentally different modeling strategies produces robust forecasts of climate change impacts on habitat and population parameters. We illustrate the principle by applying mechanistic (Niche Mapper) and correlative (Maxent, Bioclim) SDMs to predict current and future distributions and fertility of an Australian gliding possum. The two approaches make congruent, accurate predictions of current distribution and similar, dire predictions about the impact of a warming scenario, supporting previous correlative-only predictions for similar species. We argue that convergent lines of independent evidence provide a robust basis for predicting and managing extinctions risks under climate change. [source]

Converting visual census data into absolute abundance estimates: a method for calibrating timed counts of a sedentary insect population

ECOLOGICAL ENTOMOLOGY, Issue 4 2003
Ho Jung S. Yoo
Abstract., 1.,Visual surveys for small organisms on complex substrates often yield serious underestimates of true counts. When both visual counts (relative estimates of abundance) and absolute counts can be obtained from the same sample, however, the visual counts can be calibrated such that absolute estimates can be obtained in the future from visual surveys alone. 2.,A method is presented for converting quick, timed, visual counts of a sedentary insect on a shrub into absolute estimates of abundance. 3.,Analogies were drawn from simple, well-known predation theories to develop a two-parameter non-linear model. Parameter estimates were obtained by both inverse prediction and direct estimation methods; the latter were found to yield more accurate predictions of absolute abundance. 4.,The calibration model is mechanistic in its approach, and thus has potential for application in other systems in which all individuals are visible, but able to be missed during timed counts. [source]

The relationship between host selection behaviour and offspring fitness in a koinobiont parasitoid

ECOLOGICAL ENTOMOLOGY, Issue 4 2000
Ana Rivero
Summary 1. When host quality varies, optimal foraging theory assumes that parasitic wasps select hosts in a manner that increases their individual fitness. In koinobiont parasitoids, where the hosts continue developing for a certain period of time after parasitisation, host selection may not reflect current host quality but may be based on an assessment of future growth rates and resources available for the developing larvae. 2. When presented with hosts of uniform quality, the koinobiont parasitoid Leptomastix dactylopii exhibits a characteristic host-selection behaviour: some hosts are accepted for oviposition on first encounter, while others are rejected several times before an egg is laid in them, a behaviour that is commonly associated with a changing host acceptance threshold during the course of a foraging bout. 3. The fitness of the offspring that emerged from hosts accepted immediately upon encounter was compared with the fitness of offspring emerged from hosts rejected several times before being accepted for oviposition. 4. The pattern of host acceptance and rejection was not related to any of the measured fitness parameters of the offspring emerging from these hosts (development time, size at emergence, sex ratio at emergence, and female offspring egg load). 5. While complex post facto adaptive explanations can be devised to explain the nature of such a time and energy consuming host selection process, it is suggested that physiological constraints on egg production or oviposition may provide an alternative, purely mechanistic, explanation for the results obtained. [source]

Differential inhibition in vivo of ammonia monooxygenase, soluble methane monooxygenase and membrane-associated methane monooxygenase by phenylacetylene

ENVIRONMENTAL MICROBIOLOGY, Issue 5 2000
Sonny Lontoh
Phenylacetylene was investigated as a differential inhibitor of ammonia monooxygenase (AMO), soluble methane monooxygenase (sMMO) and membrane-associated or particulate methane monooxygenase (pMMO) in vivo. At phenylacetylene concentrations >,1 µM, whole-cell AMO activity in Nitrosomonas europaea was completely inhibited. Phenylacetylene concentrations above 100 µM inhibited more than 90% of sMMO activity in Methylococcus capsulatus Bath and Methylosinus trichosporium OB3b. In contrast, activity of pMMO in M. trichosporium OB3b, M. capsulatus Bath, Methylomicrobium album BG8, Methylobacter marinus A45 and Methylomonas strain MN was still measurable at phenylacetylene concentrations up to 1000 µM. AMO of Nitrosococcus oceanus has more sequence similarity to pMMO than to AMO of N. europaea. Correspondingly, AMO in N. oceanus was also measurable in the presence of 1000 µM phenylacetylene. Measurement of oxygen uptake indicated that phenylacetylene acted as a specific and mechanistic-based inhibitor of whole-cell sMMO activity; inactivation of sMMO was irreversible, time dependent, first order and required catalytic turnover. Corresponding measurement of oxygen uptake in whole cells of methanotrophs expressing pMMO showed that pMMO activity was inhibited by phenylacetylene, but only if methane was already being oxidized, and then only at much higher concentrations of phenylacetylene and at lower rates compared with sMMO. As phenylacetylene has a high solubility and low volatility, it may prove to be useful for monitoring methanotrophic and nitrifying activity as well as identifying the form of MMO predominantly expressed in situ. [source]

How best to halt and/or revert UV-induced skin ageing: strategies, facts and fiction

EXPERIMENTAL DERMATOLOGY, Issue 3 2008
Lübeck Ralf Paus
Besides obvious market pressures, increasing insight into the mechanistic overlap between UV-induced skin cancer and UV-induced skin ageing has contributed to this development. Also, as strategies that work to antagonize intrinsic skin ageing/senescence may also be exploited against photoageing (and vice versa!), it has become an important skin research challenge to dissect both the differences and the overlap mechanisms between these interwined, yet distinct phenomena. Finally, the current surge in putative ,antiageing' products, devices, and strategies , too many of which boldly promise to fight and/or repair the perils that come along with a lifetime spent in the sun in the absence of convincing evidence of efficacy , makes it particularly pertinent to critically review the available evidence to support often made antiageing claims. The current CONTROVERSIES feature, therefore, aimed to provide both guidance through, and critical voices in, the antiageing circus. Here, a panel of experts defines relevant key problems, points the uninaugurated to intriguing aspects of photoageing that one may not have considered before, highlights promising strategies for how best to halt and/or revert it, and spiritedly debates some controversially discussed approaches. [source]

Cross-species divergence of the major recognition pathways of ubiquitylated substrates for ubiquitin/26S proteasome-mediated proteolysis

FEBS JOURNAL, Issue 3 2010
Antony S. Fatimababy
The recognition of ubiquitylated substrates is an essential element of ubiquitin/26S proteasome-mediated proteolysis (UPP), which is mediated directly by the proteasome subunit RPN10 and/or RPN13, or indirectly by ubiquitin receptors containing ubiquitin-like and ubiquitin-associated domains. By pull-down and mutagenesis assays, we detected cross-species divergence of the major recognition pathways. RPN10 plays a major role in direct recognition in Arabidopsis and yeast based on the strong affinity for the long and K48-linked ubiquitin chains. In contrast, both the RPN10 and RPN13 homologs play major roles in humans. For indirect recognition, the RAD23 and DSK2 homologs (except for the human DSK2 homolog) are major receptors. The human RAD23 homolog is targeted to the 26S proteasome by the RPN10 and RPN13 homologs. In comparison, Arabidopsis uses UIM1 and UIM3 of RPN10 to bind DSK2 and RAD23, respectively. Yeast uses UIM in RPN10 and LRR in RPN1. Overall, multiple proteasome subunits are responsible for the direct and/or indirect recognition of ubiquitylated substrates in yeast and humans. In contrast, a single proteasome subunit, RPN10, is critical for both the direct and indirect recognition pathways in Arabidopsis. In agreement with these results, the accumulation of ubiquitylated substrates and severe pleiotropic phenotypes of vegetative and reproductive growth are associated with the loss of RPN10 function in an Arabidopsis T-DNA insertion mutant. This implies that the targeting and proteolysis of the critical regulators involved are affected. These results support a cross-species mechanistic and functional divergence of the major recognition pathways for ubiquitylated substrates of UPP. Structured digital abstract ,,A list of the large number of protein-protein interactions described in this article is available via the MINT article ID MINT-7307429 [source]

The expansion of mechanistic and organismic diversity associated with non-ribosomal peptides

FEMS MICROBIOLOGY LETTERS, Issue 2 2000
Michelle C Moffitt
Abstract Non-ribosomal peptides are a group of secondary metabolites with a wide range of bioactivities, produced by prokaryotes and lower eukaryotes. Recently, non-ribosomal synthesis has been detected in diverse microorganisms, including the myxobacteria and cyanobacteria. Peptides biosynthesized non-ribosomally may often play a primary or secondary role in the producing organism. Non-ribosomal peptides are often small in size and contain unusual or modified amino acids. Biosynthesis occurs via large modular enzyme complexes, with each module responsible for the activation and thiolation of each amino acid, followed by peptide bond formation between activated amino acids. Modules may also be responsible for the enzymatic modification of the substrate amino acid. Recent analysis of biosynthetic gene clusters has identified novel integrated, mixed and hybrid enzyme systems. These diverse mechanisms of biosynthesis result in the wide variety of non-ribosomal peptide structures and bioactivities seen today. Knowledge of these biosynthetic systems is rapidly increasing and methods of genetically engineering these systems are being developed. In the future, this may lead to rational drug design through combinatorial biosynthesis of these enzyme systems. [source]

The use of killer sensitivity patterns for biotyping yeast strains: the state of the art, potentialities and limitations

FEMS YEAST RESEARCH, Issue 6 2007
Pietro Buzzini
Abstract In recent years molecular techniques have been the most useful tools for the unequivocal identification of undetermined strains at the species level. In many instances, however, a further discrimination at the strain level (biotyping) is required, such as during epidemiological investigations, in which the distribution of pathogenic microorganisms is studied, and for patent protection purposes. Although molecular methods are routinely used also for yeast biotyping, several nonmolecular techniques have been proposed. One of these, the determination of the killer sensitivity pattern (KSP) towards a panel of selected killer toxins has proven to be a good auxiliary method. Despite the plethora of studies published, the potential and limitations of the determination of KSPs have never been critically evaluated. In this review the use of this nonmolecular technique as a biotyping tool is discussed and compared with some currently used DNA-based procedures. In addition, methodological, mechanistic and ecological implications are evaluated. [source]

Ecosystem controls of juvenile pink salmon (Onchorynchus gorbuscha) and Pacific herring (Clupea pallasi) populations in Prince William Sound, Alaska

FISHERIES OCEANOGRAPHY, Issue 2001
Robert T. Cooney
Abstract Five years of field, laboratory, and numerical modelling studies demonstrated ecosystem-level mechanisms influencing the mortality of juvenile pink salmon and Pacific herring. Both species are prey for other fishes, seabirds, and marine mammals in Prince William Sound. We identified critical time-space linkages between the juvenile stages of pink salmon and herring rearing in shallow-water nursery areas and seasonally varying ocean state, the availability of appropriate zooplankton forage, and the kinds and numbers of predators. These relationships defined unique habitat dependencies for juveniles whose survivals were strongly linked to growth rates, energy reserves, and seasonal trophic sheltering from predators. We found that juvenile herring were subject to substantial starvation losses during a winter period of plankton diminishment, and that predation on juvenile pink salmon was closely linked to the availability of alternative prey for fish and bird predators. Our collaborative study further revealed that juvenile pink salmon and age-0 herring exploit very different portions of the annual production cycle. Juvenile pink salmon targeted the cool-water, early spring plankton bloom dominated by diatoms and large calanoid copepods, whereas young-of-the-year juvenile herring were dependent on warmer conditions occurring later in the postbloom summer and fall when zooplankton was composed of smaller calanoids and a diversity of other taxa. The synopsis of our studies presented in this volume speaks to contemporary issues facing investigators of fish ecosystems, including juvenile fishes, and offers new insight into problems of bottom-up and top-down control. In aggregate, our results point to the importance of seeking mechanistic rather than correlative understandings of complex natural systems. [source]

The ecological significance of antioxidants and oxidative stress: a marriage between mechanistic and functional perspectives

FUNCTIONAL ECOLOGY, Issue 5 2010
Kevin J. McGraw
No abstract is available for this article. [source]

Climate, competition, and the coexistence of island lizards

FUNCTIONAL ECOLOGY, Issue 2 2006
L. B. BUCKLEY
Summary 1The influence of environmental temperatures and competition combine to determine the distributions of island lizards. Neither a bioenergetic model nor simple models of competition alone can account for the distributions. A mechanistic, bioenergetic model successfully predicts how the abundance of a solitary Anolis lizard species will decline along an island's elevation gradient. However, the abundance trends for sympatric lizards diverge from the predictions of the non-interactive model. 2Here we incorporate competition in the bioenergetic model and examine how different forms of competition modify the temperature-based abundance predictions. 3Applying the bioenergetic model with competition to an island chain tests whether the model can successfully predict on which islands two lizards species will coexist. 4Coexistence is restricted to the two largest islands, which the model predicts have substantially greater carrying capacities than the smaller islands. The model successfully predicts that competition prevents species coexistence on the smallest islands. However, the model predicts that the mid-sized islands are capable of supporting substantial populations of both species. Additional island characteristics, such as habitat diversity, resource availability and temporal disturbance patterns, may prevent coexistence. [source]

Thermal Rearrangements of Monoterpenes and Monoterpenoids

HELVETICA CHIMICA ACTA, Issue 9 2009
Achim Stolle
Abstract The thermal conversions of monoterpenes and monoterpenoids are an interesting field of research with respect to mechanistic, kinetic, and theoretical issues. Since the beginning of the 20th century, these reactions have attracted the interest of many research groups, and even today there are sufficient problems and questions to deal with. This review covers the thermal isomerization chemistry of pinanes, pinenes, carenes, and thujenes over the past 70 years. Categorization of these compounds into groups, each of them being represented by a small parent molecule (cyclobutane, vinylcyclobutane, vinylcyclopropane), allows systematization of multitude of publications. [source]

Downward approach to hydrological prediction

HYDROLOGICAL PROCESSES, Issue 11 2003
Murugesu Sivapalan
Abstract This paper presents an overview of the ,downward approach' to hydrologic prediction and attempts to provide a context for the papers appearing in this special issue. The downward approach is seen as a necessary counterpoint to the mechanistic ,reductionist' approach that dominates current hydrological model development. It provides a systematic framework to learning from data, including the testing of hypotheses at every step of analysis. It can also be applied in a hierarchical manner: starting from exploring first-order controls in the modelling of catchment response, the model complexity can then be increased in response to deficiencies in reproducing observations at different levels. The remaining contributions of this special issue present a number of applications of the downward approach, including development of parsimonious water balance models with changing time scales by learning from signatures extracted from observed streamflow data at different time scales, regionalization of model parameters, parameterization of effects of sub-grid variability, and standardized statistical approaches to analyse data and to develop model structures. This review demonstrates that the downward approach is not a rigid methodology, but represents a generic framework. It needs to play an increasing role in the future in the development of hydrological models at the catchment scale. Copyright © 2003 John Wiley & Sons, Ltd. [source]

Using process-oriented holonic (PrOH) modelling to increase understanding of information systems

INFORMATION SYSTEMS JOURNAL, Issue 5 2008
Ben Clegg
Abstract., Methodologies for understanding business processes and their information systems (IS) are often criticized, either for being too imprecise and philosophical (a criticism often levied at softer methodologies) or too hierarchical and mechanistic (levied at harder methodologies). The process-oriented holonic modelling methodology combines aspects of softer and harder approaches to aid modellers in designing business processes and associated IS. The methodology uses holistic thinking and a construct known as the holon to build process descriptions into a set of models known as a holarchy. This paper describes the methodology through an action research case study based in a large design and manufacturing organization. The scientific contribution is a methodology for analysing business processes in environments that are characterized by high complexity, low volume and high variety where there are minimal repeated learning opportunities, such as large IS development projects. The practical deliverables from the project gave IS and business process improvements for the case study company. [source]

A physical, mechanistic and fully coupled hillslope hydrology model

INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN FLUIDS, Issue 11 2005
David A. Raff
Abstract We present the mathematical development and numerical solution of a new model of flow processes on an infiltrating hillslope. We also present validation and sample applications. The model is a distributed, mechanistic, physically based hillslope hydrologic model. The model describes the small-scale processes associated with overland flow, erosion, and sediment transport on an infiltrating surface and is capable of capturing small-scale variations in flow depth, flow velocities, interactive infiltration, erosion rates, and sediment transport. The model couples the fully two-dimensional hydrodynamic equations for overland flow, the one-dimensional Richards equation for infiltration, and a sediment detachment and transport model. Two simulations are presented highlighting the model's ability to capture and describe the interaction between precipitation, overland flow, erosion and infiltration at very small scales. Results of the two-dimensional simulations indicate the system of equations produces hillslopes possessing characteristics of self-organization as observed in real world systems. Copyright © 2005 John Wiley & Sons, Ltd. [source]

HDL-c is a powerful lipid predictor of cardiovascular diseases

INTERNATIONAL JOURNAL OF CLINICAL PRACTICE, Issue 11 2007
E. Bruckert
Summary Relationship between HDL-c and cardiovascular diseases:, Beyond the role of low-density lipoprotein cholesterol (LDL-c) in the development of atherosclerosis, growing evidence suggest that high-density lipoprotein cholesterol (HDL-c) is a powerful predictor of cardiovascular disease. Indeed, epidemiological, mechanistic and intervention studies suggest that low HDL-c is a major cardiovascular risk factor and that increasing HDL-c plasma levels may be beneficial, particularly in patients with low HDL-c levels. The inverse association between HDL-c concentrations and cardiovascular risk is continuous without threshold value. Thus, any categorical definition of low HDL-c is arbitrary. Protective effects of HDL:, HDL particles are highly heterogeneous in structure and intravascular metabolism. Antiatherogenic properties of HDL include its role in the reverse cholesterol transfer, besides its antioxidant, anti-inflammatory and antiapoptotic activities. What should clinicians do?:, From a practical point of view, HDL-c should be systematically measured to assess the cardiovascular risk in patients. The first step to consider in subjects with low HDL-c is to look for specific causes and give advice to change inappropriate lifestyle components associated with low HDL-c, such as smoking, lack of physical exercise and overweight. Patients with very low HDL-c need a thorough evaluation by specialist physicians. Statins are associated with a modest increase of HDL-c (5%) while fibrates and nicotinic acid increase HDL-c by 10% and 20% respectively. [source]

The golden age of protein: initial teacher trainee's perception of food and eating

INTERNATIONAL JOURNAL OF CONSUMER STUDIES, Issue 3 2003
Liz Lakin
We make use of proteins in all aspects of our daily lives from soft-centred sweets to biological washing powders, yet we often misunderstand their fundamental role in our diet. This paper will draw on the findings of a three-phase research project into initial teacher trainee's perception of food and eating. Trainees demonstrated several similar misconceptions about the food they eat and in particular, the role of proteins. Examples included the role of proteins as an energy source, the relationship between proteins, amino acids and nitrogen and the role of DNA in synthesising proteins. These misconceptions were often translated into practice in the diet the trainees consumed and the messages they passed on, with confidence, to their pupils. In addition to the misconceptions, teaching approaches used by the trainees were highly mechanistic, with little reference being given to the relationship between food and the circumstances in which it is eaten. The relationship between dietary intake and exercise/circumstance is explored in secondary schools within food technology lessons. Often, however, it is too late to rectify the deeply entrenched misconceptions, attitudes and eating habits that school children have developed in their primary years. This paper makes the firm recommendation that we should reconsider the dietary messages we are sending out either directly or indirectly, to children. It emphasises the need to relate teaching and learning to everyday experiences. The paper concludes by suggesting possible strategies by which this may be achieved, with the protein featuring centre-stage. [source]

A Practical and Effective Ruthenium Trichloride-Based Protocol for the Regio- and Stereoselective Catalytic Hydroamidation of Terminal Alkynes

ADVANCED SYNTHESIS & CATALYSIS (PREVIOUSLY: JOURNAL FUER PRAKTISCHE CHEMIE), Issue 17 2008
Lukas
Abstract A rational catalyst development based on mechanistic and spectroscopic investigations led to the discovery of a new protocol for catalytic hydroamidation reactions that draws on easily available ruthenium trichloride trihydrate (RuCl3,3,H2O) as the catalyst precursor instead of the previously employed, expensive bis(2-methylallyl)(1,5-cyclooctadiene)ruthenium(II). This practical and easy-to-use protocol dramatically improves the synthetic applicability of Ru-catalyzed hydroamidations. The catalyst, generated in situ from ruthenium(III) chloride hydrate, tri- n -butylphosphine, 4-(dimethylamino)pyridine and potassium carbonate, effectively promotes the addition of secondary amides, lactams and carbamates to terminal alkynes under formation of (E)- anti -Markovnikov enamides. The scope of the new protocol is demonstrated by the synthesis of 24 functionalized enamide derivatives, among them valuable intermediates for organic synthesis. [source]

Toxicogenomics: a pivotal piece in the puzzle of toxicological research

JOURNAL OF APPLIED TOXICOLOGY, Issue 4 2007
Elisavet T. Gatzidou
Abstract Toxicogenomics, resulting from the merge of conventional toxicology with functional genomics, being the scientific field studying the complex interactions between the cellular genome, toxic agents in the environment, organ dysfunction and disease state. When an organism is exposed to a toxic agent the cells respond by altering the pattern of gene expression. Genes are transcribed into mRNA, which in turn is translated into proteins that serve in a variety of cellular functions. Toxicogenomics through microarray technology, offers large-scale detection and quantification of mRNA transcripts, related to alterations in mRNA stability or gene regulation. This may prove advantageous in toxicological research. In the present review, the applications of toxicogenomics, especially to mechanistic and predictive toxicology are reported. The limitations arising from the use of this technology are also discussed. Additionally, a brief report of other approaches, using other -omic technologies (proteomics and metabonomics) that overcome limitations and give global information related to toxicity, is included. Copyright © 2007 John Wiley & Sons, Ltd. [source]

An ecologist's guide to ecogenomics

JOURNAL OF ECOLOGY, Issue 1 2007
N. J. OUBORG
Summary 1Currently, plant ecologists are increasingly adopting approaches and techniques from molecular biology. The new field of ecogenomics aims at understanding the mechanistic basis for adaptation and phenotypic variation by using genomic techniques to investigate the mechanistic and evolutionary basis of species interactions, and focuses on identifying the genes affected by evolution. 2While the entire toolbox of genomics is only available for model species such as Arabidopsis thaliana, we describe the options open to ecologists interested in pursuing an ecogenomics research program on ecologically relevant traits or phenomena in non-model species, for which part of the genomic toolbox may be currently unavailable. In these non-model species, a viable ecogenomics research program is possible with relatively modest effort. 3Four challenges to further development of ecogenomics are described and discussed: (i) the ecogenomic study of non-model species; (ii) reconciliation of experimental languages of ecology and evolutionary biology with molecular biology; (iii) development of specific ecogenomic data analysis tool; and (iv) adoption of a multidisciplinary cooperative research culture. 4An important task for ecologists is to provide the necessary ecological input (the ,eco' part) to ecogenomics. [source]

Genome size and recombination in angiosperms: a second look

JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 2 2007
J. ROSS-IBARRA
Abstract Despite dramatic differences in genome size , and thus space for recombination to occur , previous workers found no correlation between recombination rate and genome size in flowering plants. Here I re-investigate these claims using phylogenetic comparative methods to test a large data set of recombination data in angiosperms. I show that genome size is significantly correlated with recombination rate across a wide sampling of species and that change in genome size explains a meaningful proportion (,20%) of variation in recombination rate. I show that the strength of this correlation is comparable with that of several characters previously linked to evolutionary change in recombination rate, but argue that consideration of processes of genome size change likely make the observed correlation a conservative estimate. And finally, although I find that recombination rate increases less than proportionally to change in genome size, several mechanistic and theoretical arguments suggest that this result is not unexpected. [source]

Testing predictions of the critical period for survival concept using experiments with stocked Atlantic salmon

JOURNAL OF FISH BIOLOGY, Issue 2004
K. H. Nislow
Two separate field experiments were performed in the U.S.A. and Norway with stocked Atlantic salmon Salmo salar. In the Norwegian experiment, the offspring of early-spawning fish which had larger eggs and emerged a few days before offspring of later spawning fish had consistently higher survival rates. In the U.S.A. experiment, stream sections with higher proportions of favourable foraging locations during the critical period (the transition from dependence on maternally-derived yolk reserves to independent feeding) had lower loss rates of fish stocked as unfed fry. These results provide support for the critical period concept (CPC) in Atlantic salmon, underscores the utility of a manipulative approach to achieve further advances in knowledge of Atlantic salmon ecology and provide additional guidance to management and restoration. A mechanistic, conceptual model for density dependence is presented to identify important knowledge gaps that remain to further evaluate the importance of the CPC for Atlantic salmon population regulation. [source]

Simplified synthesis of 1,1,[14C]-methylene-di (2-naphthol).

JOURNAL OF LABELLED COMPOUNDS AND RADIOPHARMACEUTICALS, Issue 9 2004
A radiochemical, kinetic approach
Abstract The synthesis of the 1,1,[14C]-methylene-di-(2-naphthol) 2, as the radiolabeled probe of a possible interaction between the , -amyloid fibrils and the di-naphthol mojety in the Alzheimer's disease, is reported. Very simple radiochemical procedure, starting from [14C]paraformaldehyde, produced 8.66 MBq of compound 2 at the specific radioactivity of 1.22 TBq/mol. A mechanistic and kinetic approach allowed the comprehension of the right experimental conditions. The stability of compound 2 in acetonitrile solution was investigated, denoting a significative decomposition process through the transient formation of the 1,2-naphthyne intermediate. Copyright © 2004 John Wiley & Sons, Ltd. [source]