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Major Taxa (major + taxa)
Selected AbstractsBacterioplankton assemblages transforming dissolved organic compounds in coastal seawaterENVIRONMENTAL MICROBIOLOGY, Issue 8 2007Xiaozhen Mou Summary To characterize bacterioplankton functional assemblages that transform specific components of the coastal seawater dissolved organic carbon (DOC) pool, bromodeoxyuridine (BrdU) was used to label the bacterioplankton cells that were active following addition of single-DOC model compounds: two organic osmolytes [dimethylsulfoniopropionate (DMSP) and glycine betaine (GlyB)] and two aromatic monomers [para -hydroxybenzoic acid (pHBA) and vanillic acid (VanA)]. Bacterial populations were analysed based on in situ fluorescent immunodetection of BrdU incorporation followed by fluorescence-activated cell sorting (FACS). Sorted cells were then characterized by 16S rDNA-based analysis. Populations with high BrdU incorporation level (HI) developed within 8 h of introduction of 100 nM model compound. Terminal restriction fragment length polymorphisms (T-RFLP) analysis indicated that the HI populations in all four amendments were composed of bacteria from the same major taxa (phylum and subphylum levels), but the relative abundance of each differed. High-resolution clone libraries (each containing ,200 clones) showed that the HI populations in the GlyB and VanA amendments consisted of both metabolic generalists and specialists within the , -Proteobacteria (mainly members of the Roseobacter clade), , -Proteobacteria and , -Proteobacteria (mainly members of Altermonadaceae, Chromatiaceae, Oceanospirillaceae and Pseudomonadaceae). The presence of members of OM60/241, OM185, SAR11, SAR86 and SAR116 in the HI populations indicated that members of these groups can assimilate the model DOC compounds, providing some of the first glimpses into heterotrophy by members of these poorly understood environmental clusters. [source] ALLELIC DIVERGENCE PRECEDES AND PROMOTES GENE DUPLICATIONEVOLUTION, Issue 5 2006Stephen R. Proulx Abstract One of the striking observations from recent whole-genome comparisons is that changes in the number of specialized genes in existing gene families, as opposed to novel taxon-specific gene families, are responsible for the majority of the difference in genome composition between major taxa. Previous models of duplicate gene evolution focused primarily on the role that neutral processes can play in evolutionary divergence after the duplicates are already fixed in the population. By instead including the entire cycle of duplication and divergence, we show that specialized functions are most likely to evolve through strong selection acting on segregating alleles at a single locus, even before the duplicate arises. We show that the fitness relationships that allow divergent alleles to evolve at a single locus largely overlap with the conditions that allow divergence of previously duplicated genes. Thus, a solution to the paradox of the origin of organismal complexity via the expansion of gene families exists in the form of the deterministic spread of novel duplicates via natural selection. [source] Assemblage structure, but not diversity or density, change with depth on a northeast Pacific seamountMARINE ECOLOGY, Issue 2010Craig R. McClain Abstract Although depth-related patterns in assemblage structure are documented in several deep-sea systems, variation in diversity, assemblage structure, and abundance with depth on individual seamounts remains unexplored. Knowledge of alpha- and beta-diversity on single seamounts is needed for any robust generalization about large-scale biodiversity patterns on seamounts. Here, we explore bathymetric variation in benthic megafauna, based on ROV video transects, on Davidson seamount (1246,3656 m) in the Northeast Pacific Ocean. We found that substantial change in assemblage structure can occur over vertical scales on an individual seamount. Changes of 50% in assemblage composition (beta-diversity, faunal turnover) were observed over as little as a ,1500 m depth interval down the flanks of the seamount, although bathymetric clines in composition were not uniform across major taxa. Diversity and density exhibit no consistent bathymetric pattern and can vary greatly on a single isobath. Our findings suggest that ecological and evolutionary processes may vary considerably on a single seamount. As such, seamounts should be viewed as patchworks of habitats where high beta-diversity may ultimately increase total biodiversity. [source] Emerging patterns in the comparative analysis of phylogenetic community structureMOLECULAR ECOLOGY, Issue 4 2009S. M. VAMOSI Abstract The analysis of the phylogenetic structure of communities can help reveal contemporary ecological interactions, as well as link community ecology with biogeography and the study of character evolution. The number of studies employing this broad approach has increased to the point where comparison of their results can now be used to highlight successes and deficiencies in the approach, and to detect emerging patterns in community organization. We review studies of the phylogenetic structure of communities of different major taxa and trophic levels, across different spatial and phylogenetic scales, and using different metrics and null models. Twenty-three of 39 studies (59%) find evidence for phylogenetic clustering in contemporary communities, but terrestrial and/or plant systems are heavily over-represented among published studies. Experimental investigations, although uncommon at present, hold promise for unravelling mechanisms underlying the phylogenetic community structure patterns observed in community surveys. We discuss the relationship between metrics of phylogenetic clustering and tree balance and explore the various emerging biases in taxonomy and pitfalls of scale. Finally, we look beyond one-dimensional metrics of phylogenetic structure towards multivariate descriptors that better capture the variety of ecological behaviours likely to be exhibited in communities of species with hundreds of millions of years of independent evolution. [source] Biogeographical and ecological context for managing threats to coral and rocky reef communities in the Lord Howe Island Marine Park, south-western PacificAQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 4 2010Graham J. Edgar Abstract 1.Quantitative subtidal surveys of fishes, macro-invertebrates and sessile organisms at 33 sites within the Lord Howe Island Marine Park revealed a rich fauna and flora, including 164 fishes, 40 mobile invertebrate taxa, 53 coral and other sessile invertebrate taxa, 32 algal taxa, and two seagrasses. The biota in this newly-zoned marine park was overwhelmingly tropical when species lists were tabulated; however, species with distributions centred on temperate coasts of eastern Australia and New Zealand occurred in disproportionately high densities compared with the tropical species. 2.Lord Howe Island reefs were generally in good condition. Virtually no bleached coral was observed (0.2% of the reef surface; 0.8% of total hard coral cover). Living scleractinian coral comprised the predominant group of organisms growing on reef surfaces, with 25.5% cover overall. Other major taxa observed were brown algae (18.8% cover) and red algae (16.9% cover). 3.Three distinctive community types were identified within the marine park,coral reefs, macroalgal beds and an offshore/open coast community. The distribution of these community types was strongly related to wave exposure, as indicated by an extremely high correlation with the first principal coordinates axis for biotic data (R2=0.80). 4.The close (<3,km) proximity of tropical coral and temperate macroalgal community types off Lord Howe Island is highly unusual, with localized patterns of nutrient enrichment suggested as the primary cause. The macroalgal community type is only known from a small area off the south-western coast that is not protected from fishing. This community is considered highly susceptible to threats because of potential impacts of global warming and the possibility of expansion of sea urchin barrens. Coral bleaching and ocean acidification associated with global climate change also threaten the coral reef community, which includes relatively high numbers of endemic and near endemic fish species. Copyright © 2009 John Wiley & Sons, Ltd. [source] | ||||||||||