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Selected AbstractsHow to track and assess genotyping errors in population genetics studiesMOLECULAR ECOLOGY, Issue 11 2004A. BONIN Abstract Genotyping errors occur when the genotype determined after molecular analysis does not correspond to the real genotype of the individual under consideration. Virtually every genetic data set includes some erroneous genotypes, but genotyping errors remain a taboo subject in population genetics, even though they might greatly bias the final conclusions, especially for studies based on individual identification. Here, we consider four case studies representing a large variety of population genetics investigations differing in their sampling strategies (noninvasive or traditional), in the type of organism studied (plant or animal) and the molecular markers used [microsatellites or amplified fragment length polymorphisms (AFLPs)]. In these data sets, the estimated genotyping error rate ranges from 0.8% for microsatellite loci from bear tissues to 2.6% for AFLP loci from dwarf birch leaves. Main sources of errors were allelic dropouts for microsatellites and differences in peak intensities for AFLPs, but in both cases human factors were non-negligible error generators. Therefore, tracking genotyping errors and identifying their causes are necessary to clean up the data sets and validate the final results according to the precision required. In addition, we propose the outline of a protocol designed to limit and quantify genotyping errors at each step of the genotyping process. In particular, we recommend (i) several efficient precautions to prevent contaminations and technical artefacts; (ii) systematic use of blind samples and automation; (iii) experience and rigor for laboratory work and scoring; and (iv) systematic reporting of the error rate in population genetics studies. [source] Modern strategies to identify new molecular targets for the treatment of liver diseases: The promising role of Proteomics and Redox Proteomics investigationsPROTEOMICS - CLINICAL APPLICATIONS, Issue 2 2009Andrea Scaloni Dr. Abstract Oxidative stress, due to an imbalance between the generation of ROS and the antioxidant defense capacity of the cell, is a major pathogenetic event occurring in several liver diseases, ranging from metabolic to proliferative. Main sources of ROS are represented by mitochondria and cytochrome P450 enzymes in the hepatocytes, Küppfer cells, and neutrophils. Oxidative stress affects major cellular components including lipids, DNA, and proteins. Through modulation of protein structure/function, ROS can influence gene expression profile by affecting intracellular signal transduction pathways. While several enzymatic and nonenzymatic markers of chronic oxidative stress are well known in liver, early protein targets of oxidative injury are yet poorly defined. Identification of these biomarkers will enable early detection of liver diseases and will allow monitoring the degree of liver damage, the response to pharmacological therapies, and the development of new therapeutic approaches. In the era of molecular medicine, new proteomic methodologies promise to establish a relationship between pathological hallmarks of the disease and protein structural/functional modifications, thus allowing a better understanding and a more rational therapy on liver disorders. Purpose of this review is to critically analyze the application of proteomic and redox proteomic approaches to the study of oxidative stress-linked liver diseases. [source] Survey of the pre-school child health surveillance programme in SwedenACTA PAEDIATRICA, Issue 2000R Kornfält A survey of the programme for developmental surveillance in the Child Health Centres (CHCs) in Sweden was performed using a questionnaire administered to the Chief Medical Officers (CMO) of the Child Health Services. The questionnaire asked about methods used for auditory examination, developmental surveillance and identification of disturbances in mother-child interaction. Activities for health promotion concerning breastfeeding, non-smoking and allergy prevention were also queried. Thirty-four CMOs representing 1731 CHCs and 645000 children answered the questionnaire. The reply rate was 81%. Various methods of auditory examination are offered all infants and children in Sweden. The national guidelines for health supervision are followed fairly closely by all. Screening for disturbances in attention, motor development and perception (DAMP) is performed by all but four districts, with various methods, resources and degrees of co-operation with school health services. Support in mother-child interaction is considered very important and new methods to identify and treat disturbances are gradually introduced. Breastfeeding is encouraged; breast milk is the main source of food for 67% of babies at 4 mo of age. Activities to stop or diminish use of tobacco are ongoing everywhere, as are programmes to identify children at risk of developing allergies and for allergy prevention. Thus, the Child Health Services maintain a high standard and are ambitious about introducing new methods and ideas. [source] The North American Industry Classification System and Its Implications for Accounting Research,CONTEMPORARY ACCOUNTING RESEARCH, Issue 4 2003Jayanthi Krishnan Abstract Industry classification is an important component of the methodological infrastructure of accounting research. Researchers have generally used the Standard Industrial Classification (SIC) system for assigning firms to industries. In 1999, the major statistical agencies of Canada, Mexico, and the United States began implementing the North American Industry Classification System (NAICS). The new scheme changes industry classification by introducing production as the basis for grouping firms, creating 358 new industries, extensively rearranging SIC categories, and establishing uniformity across all NAFTA nations. We examine the implications of the change for accounting research. We first assess NAICS's effectiveness in forming industry groups. Following Guenther and Rosman 1994, we use financial ratio variances to measure intra-industry homogeneity and find that NAICS offers some improvement over the SIC system in defining manufacturing, transportation, and service industries. We also evaluate whether NAICS might have an impact on empirical research by reproducing part of Lang and Lundholm's 1996 study of information-transfer and industry effects. Using SIC delineations, they focus on whether industry conditions or the level of competition is the main source of uncertainty resolved by earnings announcements. Across all levels of aggregation, we find inferences are similar using either SIC or NAICS. How-ever, we also observe that the regression coefficients in Lang and Lundholm's model show smaller intra-industry dispersion for NAICS, relative to SIC, definitions. Overall, the results suggest that NAICS definitions lead to more cohesive industries. Because of this, researchers may encounter some differences in using NAICS-industry definitions, rather than SIC, but these will depend on research design and industry composition of the sample. [source] The implementation of nutritional advice for people with diabetesDIABETIC MEDICINE, Issue 10 2003Nutrition Subcommittee of the Diabetes Care Advisory Committee of Diabetes UK Abstract These consensus-based recommendations emphasize the practical implementation of nutritional advice for people with diabetes, and describe the provision of services required to provide the information. Important changes from previous recommendations include greater flexibility in the proportions of energy derived from carbohydrate and monounsaturated fat, further liberalization in the consumption of sucrose, more active promotion of foods with a low glycaemic index, and greater emphasis on the provision of nutritional advice in the context of wider lifestyle changes, particularly physical activity. Monounsaturated fats are now promoted as the main source of dietary fat because of their lower susceptibility to lipid peroxidation and consequent lower atherogenic potential. Consumption of sucrose for patients who are not overweight can be increased up to 10% of daily energy derived from carbohydrate provided that this is eaten in the context of a healthy diet and distributed throughout the day. Evidence is presented for the effectiveness of advice provided by trained dieticians. The increasing evidence for the importance of good metabolic control and the growing requirement for measures to prevent Type 2 diabetes in an increasingly obese population will require major expansion of dietetic services if the standards in National Service Frameworks are to be successfully implemented. [source] Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the BahamasENVIRONMENTAL MICROBIOLOGY, Issue 5 2007Niculina Musat Summary Marine nematode worms without a mouth or functional gut are found worldwide in intertidal sandflats, deep-sea muds and methane-rich pock marks, and morphological studies show that they are associated with endosymbiotic bacteria. While it has been hypothesized that the symbionts are chemoautotrophic sulfur oxidizers, to date nothing is known about the phylogeny or function of endosymbionts from marine nematodes. In this study, we characterized the association between bacterial endosymbionts and the marine nematode Astomonema sp. from coral reef sediments in the Bahamas. Phylogenetic analysis of the host based on its 18S rRNA gene showed that Astomonema sp. is most closely related to non-symbiotic nematodes of the families Linhomoeidae and Axonolaimidae and is not closely related to marine stilbonematinid nematodes with ectosymbiotic sulfur-oxidizing bacteria. In contrast, phylogenetic analyses of the symbionts of Astomonema sp. using comparative 16S rRNA gene sequence analysis revealed that these are closely related to the stilbonematinid ectosymbionts (95,96% sequence similarity) as well as to the sulfur-oxidizing endosymbionts from gutless marine oligochaetes. The closest free-living relatives of these gammaproteobacterial symbionts are sulfur-oxidizing bacteria from the family Chromatiaceae. Transmission electron microscopy and fluorescence in situ hybridization showed that the bacterial symbionts completely fill the gut lumen of Astomonema sp., suggesting that these are their main source of nutrition. The close phylogenetic relationship of the Astomonema sp. symbionts to known sulfur-oxidizing bacteria as well as the presence of the aprA gene, typically found in sulfur-oxidizing bacteria, indicates that the Astomonema sp. symbionts use reduced sulfur compounds as an energy source to provide their hosts with nutrition. [source] Microsite-dependent changes in methanogenic populations in a boreal oligotrophic fenENVIRONMENTAL MICROBIOLOGY, Issue 11 2003Pierre E. Galand Summary Wetlands, including peatlands, are the main source of natural methane emission. Well-defined fen microsites have different methane emissions rates, but it is not known whether the methane-producing Archaea communities vary at these sites. Possible horizontal variations of communities, in a natural oligotrophic fen, were analysed by characterizing the methanogens from two well-defined microsites: Eriophorum lawn and Hummock. Community structures were studied at two different layers of the fen, showing, respectively, high and low methane production. The structure of methanogen populations was determined using molecular techniques targeting the 16SrRNA gene and combined denaturing gradient gel electrophoresis (DGGE) and restriction fragment length polymorphism (RFLP) analysis. Results subjected to non-metric multidimensional scaling (MDS), diversity indices calculation and phylogenetic analysis revealed that upper layer communities changed with site while deeper layer communities remained the same. Phylogenetic analyses revealed six different clusters of sequences grouping with only two known orders of methanogens. Upper layers of Hummock were dominated by sequences clustering with members of Methanomicrobiales and sequences dominating the upper part of the Eriophorum lawn were related to members of the order Methanosarcinales. Novel methanogenic sequences were found at both sites at both depths. Vegetation characterizing the microsites probably influences the microbial communities in the layers of the fen where methane is produced. [source] Modeling the environmental fate of perfluorooctanoate and its precursors from global fluorotelomer acrylate polymer useENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 11 2008Rosalie van Zelm Abstract The environment contains various direct and indirect sources of perfluorooctanoic acid (PFOA). The present study uses a dynamic multispecies environmental fate model to analyze the potential formation of perfluorooctanoate (PFO), the anion of PFOA, in the environment from fluorotelomer acrylate polymer (FTacrylate) emitted to landfills and wastewater, residual fluorotelomer alcohol (8:2 FTOH) in FTacrylate, and residual PFOA in FTacrylate. A multispecies version of the SimpleBox model, which is capable of determining the fate of a chemical and its degradation products, was developed for this purpose. An uncertainty analysis on the chemical-specific input parameters was performed to examine for uncertainty in modeled concentrations. In 2005, residual 8:2 FTOH made up 80% of the total contribution of FTacrylate use to PFO concentrations in global oceans, and residual PFOA in FTacrylate contributed 15% to PFO concentrations from FTacrylate use in global oceans. After hundreds of years, however, the main source of PFO from total historical FTacrylate production is predicted to be FTacrylate degrading in soil following land application of sludge from sewage treatment plants, followed by FTacrylate still present in landfills. Uncertainty in modeled PFO concentrations was up to a factor of 3.3. Current FTacrylate use contributes less than 1% of the PFO in seawater, but because direct PFOA emission sources are reduced and PFOA continues to be formed from FTacrylate in soil and in landfills, this fraction grows over time. [source] Effect of Interictal Spikes on Single-Cell Firing Patterns in the HippocampusEPILEPSIA, Issue 4 2007Jun-Li Zhou Summary:,Purpose: The interictal EEG spike(s) is the hallmark of the epileptic EEG. While focal interictal spike (IS) have been associated with transitory cognitive impairment, with the type of deficit dependent on where in the cortex the IS arises, the mechanism by which IS result in transitory dysfunction is not known. The purpose of this study was to determine the effect of IS on single-cell firing patterns in freely moving rats with a prior history of seizures. Methods: We studied IS in two seizure models; pilocarpine-induced status epilepticus and recurrent flurothyl models. The effect of spontaneous hippocampal spikes on action potentials (APs) of CA1 cells in rats walking in a familiar environment was investigated using 32 extracellular electrodes. We also compared the effect of spikes on two types of hippcampal cells; place cells that discharge rapidly only when the rat's head is in a specific part of the environment, the so-called firing field, and interneurons, which are a main source of inhibition in the hippocampus. Results: IS were associated with a decreased likelihood of AP compared with IS-free portions of the record. Compared to pre-IS baseline, IS were followed by significant decreases in CA1 APs for periods up to 2 s following the IS in both models. When occurring in flurries, IS were associated with a pronounced decrease in APs. The response to IS was cell-dependent; IS resulted in decreases in AP firing after the IS in interneurons but not place cells. Conclusions: This study demonstrates that IS have substantial effects on cellular firing in the hippocampus and that these effects last far longer than the spike and slow wave. Furthermore, the effect of IS on cellular firing was cell specific, affecting interneurons more than place cells. These findings suggest that IS may contribute to seizure-induced cognitive impairment by altering AP firing in a cell-specific manner. [source] Loss of FOXP3 expression in natural human CD4+CD25+ regulatory T cells upon repetitive in vitro stimulationEUROPEAN JOURNAL OF IMMUNOLOGY, Issue 4 2009Petra Hoffmann Abstract The adoptive transfer of CD4+CD25+ natural regulatory T cells (Treg) is a promising strategy for the treatment of autoimmune diseases and the prevention of alloresponses after transplantation. Clinical trials exploring this strategy require efficient in vitro expansion of this rare cell population. Protocols developed thus far rely on high-grade purification of Treg prior to culture initiation, a process still hampered by the lack of Treg cell-specific surface markers. Depletion of CD127+ cells was shown to separate activated conventional T cells from natural Treg cell populations allowing the isolation of highly enriched FOXP3+ cells with all functional and molecular characteristics of natural Treg. Here, we demonstrate that upon in vitro expansion, CpG methylation in a conserved region within the FOXP3 gene locus increased in CD4+CD25+CD127low Treg, correlating with loss of FOXP3 expression and emergence of pro-inflammatory cytokines. Further analysis identified CD45RA,FOXP3+ memory-type Treg as the main source of converting cells, whereas CD45RA+FOXP3+ Treg from the same donors showed no conversion within 3,wk of in vitro expansion. Thus, Treg cell lineage differentiation does not seem to represent a final fate decision, as natural Treg can lose their cell-type-specific characteristics after repetitive TCR stimulation. [source] Ultrastructural evidence for a pre- and postsynaptic localization of full-length trkB receptors in substantia gelatinosa (lamina II) of rat and mouse spinal cordEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 8 2005Chiara Salio Abstract Brain-derived neurotrophic factor (BDNF) exerts its trophic effects by acting on the high-affinity specific receptor trkB. BDNF also modulates synaptic transmission in several areas of the CNS, including the spinal cord dorsal horn, where it acts as a pain modulator by yet incompletely understood mechanisms. Spinal neurons are the main source of trkB in lamina II (substantia gelatinosa). Expression of this receptor in dorsal root ganglion (DRG) cells has been a matter of debate, whereas a subpopulation of DRG neurons bears trkA receptors and contains BDNF. By the use of two different trkB antibodies we observed that 7.7% and 10.8% of DRG neurons co-expressed BDNF + trkB but not trkA, respectively, in rat and mouse. Ultrastructurally, full-length trkB (fl-trkB) receptors were present at somato-dendritic membranes of lamina II neurons (rat: 66.8%; mouse: 73.8%) and at axon terminals (rat: 33.2%; mouse: 26.2%). In both species, about 90% of these terminals were identified as primary afferent fibres (PAFs) considering their morphology and/or neuropeptide content. All fl-trkB-immunopositive C boutons in type Ib glomeruli were immunoreactive for BDNF and, at individual glomeruli and axo-dendritic synapses, fl-trkB receptors were located in a mutually exclusive fashion at pre- or postsynaptic membranes. Thus, only a small fraction of fl-trkB-immunoreactive dendrites were postsynaptic to BDNF-immunopositive PAFs. This is the first ultrastructural description of fl-trkB localization at synapses between first- and second-order sensory neurons in lamina II, and suggests that BDNF may be released by fl-trkB-immunopositive PAFs to modulate nociceptive input in this lamina of dorsal horn. [source] Magnitude and sources of uncertainties in soil organic carbon (SOC) stock assessments at various scalesEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 5 2009E. Goidts Summary Uncertainties in soil organic carbon (SOC) stock assessments are rarely quantified even though they are critical in determining the significance of the results. Previous studies on this topic generally focused on a single variable involved in the SOC stock calculation (SOC concentration, sampling depth, bulk density and rock fragment content) or on a single scale, rather than using an integrated approach (i.e. taking into account interactions between variables). This study aims to apply such an approach to identify and quantify the uncertainties in SOC stock assessments for different scales and spatial landscape units (LSU) under agriculture. The error propagation method (, method) was used to quantify the relative contribution of each variable and interaction involved to the final SOC stock variability. Monte Carlo simulations were used to cross-check the results. Both methods converged (r2=0.78). As expected, the coefficient of variation of the SOC stock increased across scales (from 5 to 35%), and was higher for grassland than for cropland. Although the main source of uncertainty in the SOC stock varied according to the scale and the LSU considered, the variability of SOC concentration (due to errors from the laboratory and to the high SOC spatial variability) and of the rock fragment content were predominant. When assessing SOC stock at the landscape scale, one should focus on the precision of SOC analyses from the laboratory, the reduction of SOC spatial variability (using bulk samples, accurate re-sampling, high sampling density or stratified sampling), and the use of equivalent masses for SOC stock comparison. The regional SOC stock monitoring of agricultural soils in southern Belgium allows the detection of an average SOC stock change of 20% within 11 years if very high rates of SOC stock changes occur (1 t C ha,1 year,1). Amplitude et sources des incertitudes liées aux estimations des stocks de carbone organique dans le sol (COS) à différentes échelles Résumé Les erreurs associées aux estimations du stock de carbone organique dans le sol (COS) sont rarement quantifiées bien qu'elles puissent empêcher l'obtention de résultats significatifs. Les quelques études qui le font focalisent en général sur une seule variable nécessaire au calcul du stock de COS (concentration en COS, profondeur échantillonnée, densité apparente et contenu en fragments rocheux) ou sur une échelle spatiale particulière, sans utiliser d'approche intégrée (prenant en compte les interactions entre les variables). Cette étude a pour objectif d'utiliser une telle approche pour identifier et quantifier les incertitudes liées aux estimations de stock de COS à différentes échelles spatiales et pour diverses unités spatiales de paysages (USP) agricoles. La loi de propagation des erreurs (méthode ,) permet de quantifier la contribution relative de chaque variable et interaction à la variabilité finale du stock de COS. Les simulations de Monte Carlo sont utilisées pour la vérification croisée des résultats. Les deux méthodes ont convergé (r2= 0.78). Comme prévu, le coefficient de variation du stock de COS a proportionnellement augmenté avec l'échelle spatiale considérée (de 5 à 35%), et était plus élevé pour les cultures que pour les prairies. Bien que la principale source d'erreur sur le stock de COS soit fonction de l'échelle spatiale et du type d'USP considérés, la variabilité du contenu en COS (du fait des erreurs de laboratoire et de sa grande variabilité spatiale) et du contenu en fragments rocheux étaient prédominants. Lors de l'estimation des stocks de COS à l'échelle du paysage, l'attention devrait prioritairement porter sur la précision des analyses en COS du laboratoire, la réduction de la variabilité spatiale du COS (en utilisant des échantillons composites, un ré-échantillonnage précis, une densité d'échantillonnage élevée ou un échantillonnage stratifié), et sur l'utilisation de masses équivalentes pour comparer les stocks de COS. Le réseau régional de suivi des stocks de COS des sols agricoles dans le sud de la Belgique permet la détection d'un changement de stock de COS moyen de 20% en 11 ans pour un taux très élevé de changement en stock de COS (1 t C ha,1 year,1). [source] Intracutaneous injection of the macrophage-activating lipopeptide-2 (MALP-2) which accelerates wound healing in mice , a phase I trial in 12 patientsEXPERIMENTAL DERMATOLOGY, Issue 12 2008Margarete Niebuhr Abstract:, Chronic skin ulcers, such as leg ulcers, pressure sores and diabetic foot ulcers, are a challenge to physicians and medical personnel and a cause of tremendous discomfort and ensuing loss of quality of life to the patients. Wound healing involves production and action of various growth factors. A novel approach, distinct from the application of single growth factors, is the administration of the macrophage stimulator macrophage-activating lipopeptide-2 (MALP-2). The rationale is based on the finding that macrophages are the main source of several growth factors required for wound healing, which are sequentially released during this process. MALP-2 has previously been shown to be effective in an established animal model with diabetic mice. The purpose of the present phase I study was to establish tolerability of MALP-2 when applied into small cutaneous wounds in human beings. Twelve patients (six females and six males; mean age 66.8 years; range 52,87 years) with different diagnoses were enrolled into the study. An artificial wound was created with a 2-mm diameter skin biopsy punch and a volume of 30 ,l MALP-2 (0.125,1 ,g) or vehicle control, respectively, was injected intracutaneously into the wound and closed with a water-resistant transparent adhesive. Photos were taken daily from every patient up to 6 days, and skin biopsies were performed after 1 week from six patients. We could show in the present study for the first time that MALP-2 caused a transient erythema and was tolerated without any systemic side effects up to a dose of 1 ,g per wound in human beings. In healthy as well as in diabetic patients, MALP-2 induced local inflammation that faded after 48 h. The effectiveness of MALP-2 in the healing of chronic wounds in humans, e.g. in chronic skin ulcers, such as leg ulcers, pressure sores and diabetic foot ulcers, could now be addressed in further studies. [source] Benthic metabolism in two turbid dryland riversFRESHWATER BIOLOGY, Issue 2 2009CHRISTINE S. FELLOWS Summary 1.,Australian dryland rivers have among the most variable discharge of any rivers worldwide and are characterized by extended periods of no flow during which aquatic habitat contracts into isolated waterholes. Despite naturally high turbidity, benthic primary production is known to be the main source of carbon to waterhole food webs. The objective of this study was to quantify rates of benthic metabolism and identify factors influencing these rates in two Australian dryland rivers, the Cooper Creek and the Warrego River. 2.,Both rivers have similar variable hydrology and high levels of turbidity (photic depths < 0.4 m), but fish abundance in Cooper Creek is 10 times than that of the Warrego River. Therefore, an additional aim of the study was to determine if fish abundances reflected underlying differences in benthic primary production. 3.,Benthic gross primary production (GPP), benthic respiration, nutrient concentrations and light penetration were measured immediately after flow had ceased (,post-flow') and after at least 2 months of zero flow (,no-flow') in 15 waterholes from each river. A subset of four waterholes from each river was sampled on two additional occasions to determine if patterns were consistent over time. 4. Cooper Creek generally had higher rates of GPP and a more autotrophic benthic zone than the Warrego River. As a result, the expected positive relationship between fish abundance and GPP was generally observed at a broad catchment scale. 4.,Light was the major control in benthic GPP in both rivers, as nutrient concentrations were high on all sampling occasions. However, for similar values of photic depth, GPP was greater in Cooper Creek than in the Warrego River. This suggests that more frequent disturbance of the littoral zone may inhibit biofilm development in waterholes of the Warrego River. 5.,Although flow variability in dryland rivers is extreme compared with other rivers worldwide, cycles of expansion and contraction of aquatic habitat in these two rivers were associated with a shift in the dominance of regional scale (subcatchments contributing to river flow) versus local scale (waterhole morphology) influences on ecosystem functioning, similar to floodplain rivers in tropical and temperate regions. [source] Modification of the diel vertical migration of Bythotrephes longimanus by the cold-water planktivore, Coregonus artediFRESHWATER BIOLOGY, Issue 5 2008JOELLE D. YOUNG Summary 1. The weak diel vertical migration observed in the large cladoceran Bythotrephes longimanus seems contradictory to the predator-avoidance hypothesis that predicts large zooplankton should have long migration amplitudes. However, cold-water planktivores, especially Coregonus spp., are a main source of mortality for Bythotrephes and hence a deeper migration would result in a greater overlap with these hypolimnetic planktivores. We hypothesized that Coregonus artedi (cisco) modifies the normal vertical migration pattern of Bythotrephes, such that the latter stays higher in the water column during the day and thus migrates less extremely at night. 2. The vertical distribution of Bythotrephes during the day was determined from single visits to six lakes in Ontario, Canada, all of which contain warm-water, epilimnetic planktivores but differing in whether they contain cisco. One lake of each fish type was sampled day and night every 2,3 weeks over the ice-free season to examine daytime depths and migration amplitude. 3. The vertical migration of Bythotrephes differed in the presence and absence of cisco. In the lakes with cisco, there were significantly fewer Bythotrephes in the hypolimnion and they were higher in the water column during the day. Migration amplitude was smaller in the cisco than in the non-cisco lake. These observations were not attributable to differences in physical factors, and, although not conclusively attributable to cisco, are consistent with an effect of cisco. 4. We suggest that diurnal depth selection by Bythotrephes in lakes containing cisco is a trade-off between the risk of predation by warm- versus cold-water predators, balanced by the benefits of increased temperature and feeding rates near the surface. Even in lakes without cisco, however, the vertical migration of Bythotrephes was less than expected, suggesting that diurnal depth selection is a balance between the risk from warm-water planktivores and access to sufficient light to feed effectively. [source] Seasonal nitrogen storage and remobilization in the forb Rumex acetosaFUNCTIONAL ECOLOGY, Issue 3 2001U. Bausenwein Summary 1,The contribution of N storage and remobilization to the vegetative and reproductive growth of the forb Rumex acetosa was quantified using 15N labelling techniques with plants derived from semi-natural grasslands in Scotland. 2,The contribution of remobilized N to the total N in the new above-ground tissues was highest at the beginning of the growing season at 58%. New leaves and reproductive organs contained equal amounts of remobilized N. 3,During early vegetative growth, the taproot was the main source of remobilized N, whereas during reproductive growth, N was additionally remobilized from fine roots and leaves. 4,Free amino acids (mainly arginine and glutamine) and proteins were identified as the main storage compounds in the taproots. The protein pool did not show any seasonal variations that indicated the existence of a vegetative storage protein, indicating that such proteins are not a necessary component of N storage/remobilization in all species. 5,The ability to store and remobilize N provides a mechanism for growth in the spring when the availability of soil N is low, and means that growth depends upon environmental conditions during more than one year. [source] Effect of Alkyl Side-Chain Length on Photovoltaic Properties of Poly(3-alkylthiophene)/PCBM Bulk HeterojunctionsADVANCED FUNCTIONAL MATERIALS, Issue 20 2009Abay Gadisa Abstract The morphological, bipolar charge-carrier transport, and photovoltaic characteristics of poly(3-alkylthiophene) (P3AT):[6,6]-phenyl-C61-butyric acid methyl ester (PCBM) blends are studied as a function of alkyl side-chain length m, where m equals the number of alkyl carbon atoms. The P3ATs studied are poly(3-butylthiophene) (P3BT, m,=,4), poly(3-pentylthiophene) (P3PT, m,=,5), and poly(3-hexylthiophene) (P3HT, m,=,6). Solar cells with these blends deliver similar order of photo-current yield (exceeding 10,mA cm,2) irrespective of side-chain length. Power conversion efficiencies of 3.2, 4.3, and 4.6% are within reach using solar cells with active layers of P3BT:PCBM (1:0.8), P3PT:PCBM (1:1), and P3HT:PCBM (1:1), respectively. A difference in fill factor values is found to be the main source of efficiency difference. Morphological studies reveal an increase in the degree of phase separation with increasing alkyl chain length. Moreover, while P3PT:PCBM and P3HT:PCBM films have similar hole mobility, measured by hole-only diodes, the hole mobility in P3BT:PCBM lowers by nearly a factor of four. Bipolar measurements made by field-effect transistor showed a decrease in the hole mobility and an increase in the electron mobility with increasing alkyl chain length. Balanced charge transport is only achieved in the P3HT:PCBM blend. This, together with better processing properties, explains the superior properties of P3HT as a solar cell material. P3PT is proved to be a potentially competitive material. The optoelectronic and charge transport properties observed in the different P3AT:PCBM bulk heterojunction (BHJ) blends provide useful information for understanding the physics of BHJ films and the working principles of the corresponding solar cells. [source] THE CHANGING STRUCTURE OF THE CENTRAL PLACE SYSTEM IN TRØNDELAG, NORWAY, OVER THE PAST 40 YEARS , VIEWED IN THE LIGHT OF OLD AND RECENT THEORIES AND TRENDSGEOGRAFISKA ANNALER SERIES B: HUMAN GEOGRAPHY, Issue 2007Britt Dale ABSTRACT. The IGU Symposium on Urban Geography in Lund in 1960 was a path-breaking event towards new nomothetic thinking within the discipline. In nearly half of the papers, the state of the art in central place research was presented and debated. The symposium was the main source of inspiration for a study of the central place system in Midt-Norge in the 1960s, a research project that has been followed up in stages over a 40-year period. The result is a unique collection of data, covering all central places in the region and the location of approximately 200 service functions of different categories in the 1960s, 1980s and c. 2000. Despite the profound changes that have taken place on the part of the consumer, as well as the supplier, the main structure of the central place hierarchy has been surprisingly stable. However, when looking at the growth and decline of each of the different service functions, considerable dynamics have been found. There are tendencies of centralization/concentration as well as decentralization/dispersion. Furthermore, the functional division of labour by vertical steps and tiers in the 1960s has been supplemented by horizontal specialization between places, and also in the lower levels of the central place hierarchy. In this paper, we present and discuss some of the main changes that have taken place in the system in the light of older and newer theories and trends. [source] LABOUR AND LANDSCAPES: THE POLITICAL ECONOMY OF LANDESQUE CAPITAL IN NINETEENTH CENTURY TANGANYIKAGEOGRAFISKA ANNALER SERIES B: HUMAN GEOGRAPHY, Issue 3 2007N. Thomas Håkansson ABSTRACT. In a long-term and global perspective irrigated and terraced landscapes, landesque capital, have often been assumed to be closely associated with hierarchical political systems. However, research is accumulating that shows how kinship-based societies (including small chiefdoms) have also been responsible for constructing landesque capital without population pressure. We examine the political economy of landesque capital through the intersections of decentralized politics and regional economies. A crucial question guiding our research is why some kinship-based societies chose to invest their labour in landesque capital while others did not. Our analysis is based on a detailed examination of four relatively densely populated communities in late pre-colonial and early colonial Tanzania. By analysing labour processes as contingent and separate from political types of generalized economic systems over time we can identify the causal factors that direct labour and thus landscape formation as a process. The general conclusion of our investigation is that landesque investments occurred in cases where agriculture was the main source of long-term wealth flow irrespective of whether or not hierarchical political systems were present. However, while this factor may be a necessary condition it is not a sufficient cause. In the cases we examined, the configurations of world-systems connections and local social and economic circumstances combined to either produce investments in landesque capital or to pursue short-term strategies of extraction. [source] Anandamide enhances IL-10 production in activated microglia by targeting CB2 receptors: Roles of ERK1/2, JNK, and NF-,BGLIA, Issue 2 2010Fernando Correa Abstract The endocannabinoid system exhibits anti-inflammatory properties by regulating cytokine production. Anandamide (AEA) down-regulates proinflammatory cytokines in a viral model of multiple sclerosis (MS). However, little is known about the mechanisms by which AEA exerts these effects. Microglial cells are the main source of cytokines within the brain and the first barrier of defense against pathogens by acting as antigen presenting cells. IL-10 is a key physiological negative regulator of microglial activation. In this study we show that AEA enhances LPS/IFN,-induced IL-10 production in microglia by targeting CB2 receptors through the activation of ERK1/2 and JNK MAPKs. AEA also inhibits NF-,B activation by interfering with the phosphorylation of I,B,, which may result in an increase of IL-10 production. Moreover, endogenously produced IL-10 negatively regulates IL-12 and IL-23 cytokines, which in its turn modify the pattern of expression of transcription factorsinvolved in Th commitment of splenocytes. This suggeststhat by altering the cytokine network, AEA could indirectly modify the type of immune responses within the central nervous system (CNS). Accordingly, pharmacological modulation of AEA uptake and degradation might be a useful tool for treating neuroinflammatory diseases. © 2009 Wiley-Liss, Inc. [source] The European carbon balance.GLOBAL CHANGE BIOLOGY, Issue 5 2010Part 2: croplands Abstract We estimated the long-term carbon balance [net biome production (NBP)] of European (EU-25) croplands and its component fluxes, over the last two decades. Net primary production (NPP) estimates, from different data sources ranged between 490 and 846 gC m,2 yr,1, and mostly reflect uncertainties in allocation, and in cropland area when using yield statistics. Inventories of soil C change over arable lands may be the most reliable source of information on NBP, but inventories lack full and harmonized coverage of EU-25. From a compilation of inventories we infer a mean loss of soil C amounting to 17 g m,2 yr,1. In addition, three process-based models, driven by historical climate and evolving agricultural technology, estimate a small sink of 15 g C m,2 yr,1 or a small source of 7.6 g C m,2 yr,1. Neither the soil C inventory data, nor the process model results support the previous European-scale NBP estimate by Janssens and colleagues of a large soil C loss of 90 ± 50 gC m,2 yr,1. Discrepancy between measured and modeled NBP is caused by erosion which is not inventoried, and the burning of harvest residues which is not modeled. When correcting the inventory NBP for the erosion flux, and the modeled NBP for agricultural fire losses, the discrepancy is reduced, and cropland NBP ranges between ,8.3 ± 13 and ,13 ± 33 g C m,2 yr,1 from the mean of the models and inventories, respectively. The mean nitrous oxide (N2O) flux estimates ranges between 32 and 37 g C Eq m,2 yr,1, which nearly doubles the CO2 losses. European croplands act as small CH4 sink of 3.3 g C Eq m,2 yr,1. Considering ecosystem CO2, N2O and CH4 fluxes provides for the net greenhouse gas balance a net source of 42,47 g C Eq m,2 yr,1. Intensifying agriculture in Eastern Europe to the same level Western Europe amounts is expected to result in a near doubling of the N2O emissions in Eastern Europe. N2O emissions will then become the main source of concern for the impact of European agriculture on climate. [source] Mental health training and development needs of community agency staffHEALTH & SOCIAL CARE IN THE COMMUNITY, Issue 5 2002Jenny Secker Abstract Emphasis has long been placed in UK national policy on providing ,seamless' mental health services to meet both the health and social care needs of service users. While attention has been paid to the training required by specialist mental health and primary care staff in order to achieve this, the needs of other community agency staff have received less attention. The present article describes a study designed to identify the training needs of staff working within a broad range of agencies. Focus group discussions were used to explore participants' experiences of mental health problems amongst clients, their confidence in dealing with these, current sources of support and perceived training needs. The results indicate that participants in all agencies routinely encountered a range of problems. Colleagues were the main source of support, followed by line managers, but supervision structures and wider organisational support were lacking in some cases. Joint working with specialist mental health services was almost universally problematic and all groups identified a range of training needs. On the basis of the results, the present authors put forward suggestions as to how these needs might be met. [source] CX3CL1-CX3CR1 interaction prevents carbon tetrachloride-induced liver inflammation and fibrosis in mice,HEPATOLOGY, Issue 4 2010Tomonori Aoyama Chronic liver disease is associated with hepatocyte injury, inflammation, and fibrosis. Chemokines and chemokine receptors are key factors for the migration of inflammatory cells such as macrophages and noninflammatory cells such as hepatic stellate cells (HSCs). The expression of CX3CR1 and its ligand, CX3CL1, is up-regulated in chronic liver diseases such as chronic hepatitis C. However, the precise role of CX3CR1 in the liver is still unclear. Here we investigated the role of the CX3CL1-CX3CR1 interaction in a carbon tetrachloride (CCl4),induced liver inflammation and fibrosis model. CX3CR1 was dominantly expressed in Kupffer cells in the liver. In contrast, the main source of CX3CL1 was HSCs. Mice deficient in CX3CR1 showed significant increases in inflammatory cell recruitment and cytokine production [including tumor necrosis factor , (TNF-,); monocyte chemoattractant protein 1; macrophage inflammatory protein 1,; and regulated upon activation, normal T cell expressed, and secreted (RANTES)] after CCl4 treatment versus wild-type (WT) mice. This suggested that CX3CR1 signaling prevented liver inflammation. Kupffer cells in CX3CR1-deficient mice after CCl4 treatment showed increased expression of TNF-, and transforming growth factor , and reduced expression of the anti-inflammatory markers interleukin-10 (IL-10) and arginase-1. Coculture experiments showed that HSCs experienced significantly greater activation by Kupffer cells from CCl4 -treated CX3CR1-deficient mice versus WT mice. Indeed, augmented fibrosis was observed in CX3CR1-deficient mice versus WT mice after CCl4 treatment. Finally, CX3CL1 treatment induced the expression of IL-10 and arginase-1 in WT cultured Kupffer cells through CX3CR1, which in turn suppressed HSC activation. Conclusion: The CX3CL1-CX3CR1 interaction inhibits inflammatory properties in Kupffer cells/macrophages and results in decreased liver inflammation and fibrosis. (Hepatology 2010) [source] Expression, regulation, and function of ,V integrins in hepatocellular carcinoma: An in vivo and in vitro studyHEPATOLOGY, Issue 2 2002Mimoun Nejjari The expression of ,V integrins by neoplastic cells contributes to the promotion of local invasion and metastasis. The most characteristic extracellular ligands of ,V integrins are vitronectin and fibronectin. Hepatocytes are the main source of vitronectin, and the capacity to synthesize and secrete vitronectin is usually retained in hepatocellular carcinoma. The aim of this study was to explore the expression, regulation, and functional role of ,V integrins in hepatocellular carcinoma. We first analyzed the expression of ,V integrins and their ligands fibronectin and vitronectin in 80 cases of hepatocellular carcinoma. ,V integrin chain was detected in 44 cases and vitronectin in 50. Twenty-four of the 44 ,V-positive tumors contained large amounts of vitronectin. These cases presented more frequently with adverse histoprognostic factors, including infiltrative growth pattern (62.5%), lack of capsule (71%), presence of capsular invasion (57%), and satellite nodules (50%). We then used HepG2 and Hep3B cell lines as in vitro models to study ,V integrin regulation and function. HepG2 and Hep3B cells expressed ,V integrin chain and used ,V,1 and ,V,5 for adhesion and migration on vitronectin. Tumor necrosis factor (TNF) , and transforming growth factor (TGF) , significantly increased the expression levels of ,V integrins and stimulated the adhesion and migration of both HepG2 and Hep3B cell lines on vitronectin. The effects of growth factors on cell adhesion and migration were reproduced by incubation with conditioned medium from rat liver myofibroblasts. In conclusion, our results support the existence of an ,V integrin/vitronectin connection in hepatocellular carcinoma and suggest that this connection may be an adverse prognostic factor. [source] Fertility needs and funding in couples with blood-borne viral infectionHIV MEDICINE, Issue 1 2010E Kalu Background Couples infected with HIV, hepatitis B virus (HBV) and hepatitis C virus (HCV) are increasingly seeking assisted conception. These couples avoid unprotected intercourse and use condoms at all times in order to minimize the risk of infecting their partner. As this practice inhibits pregnancy, assisted procreation is generally required for safe conception. For many couples, access to such services is restricted on ethical, geographical and financial grounds. Objective The aim of the study was to assess the fertility needs, geographical origin and state funding of patients with blood-borne viral infection. Methods A retrospective review of the medical records of couples referred for fertility treatment between January 1999 and December 2006, where one or both partners were infected with HIV, HBV and/or HCV, was carried out. Results Of the 205 couples included in the study, 44% lived in London, 51% came from elsewhere in the United Kingdom and 5% travelled from outside the United Kingdom to seek treatment. Genitourinary medicine clinics were the main source of referral. 85.8% of couples had HIV infection, 15.1% were infected with HBV and 13.6% had HCV infection. Fertility screening identified a high incidence of male factor infertility (33.3%) in HIV-infected men and tubal disease (40.8%) in HIV-infected women. Only 23.6% of HIV-infected couples, 20% of HBV-infected couples and 12.5% of HCV-infected couples obtained state funding for assisted conception. Conclusion Fertility screening identified a high incidence of male and tubal factor subfertility among couples living with HIV, HBV and HCV. Limited access to specialist clinics equipped to cater for these couples and restricted funding may impact negatively on couples obtaining risk-reducing assisted reproduction treatment. This may have long-term public health implications as individuals attempt to conceive through unprotected intercourse. [source] Political ergonomics, macroergonomic battlesHUMAN FACTORS AND ERGONOMICS IN MANUFACTURING & SERVICE INDUSTRIES, Issue 5 2008Leszek Pacholski Humanocentric-oriented social and technological systems have to be perceived as the main source of technological advancement. This source it so attractive that from the point of view of acquisition possibilities it captures the attention of not only business people but also political incumbents who (according to Buchanan's theory) want to satisfy their particular interests. A characteristic feature of social and technological systems is their competitive market position. Taking over these systems by political lobbies with the legitimate usage of intended violence is an example of a contemporary macroergonomic battle. Both of Clausewitz's objectives of war are present: a political objective that is forcing the community that makes up the system to fulfill the politically determined will of the party taking over, and a military objective consisting of an attempt of the moral, social, or even physical destruction of the system leader and its direct coworkers. This article presents a specific example: a case study of a macroergonomic battle fought with a big industrial enterprise. This study serves as a starting point for general methodological premises pertaining to an effective strategy of fighting a macroergonomic battle. The essence of this strategy is learning three so-called exogenic levers of occasional acquisition. © 2008 Wiley Periodicals, Inc. [source] A review of the suspended sediment budget at the confluence of the Paraná and Paraguay RiversHYDROLOGICAL PROCESSES, Issue 22 2009Mario L. Amsler Abstract In this paper, the sediment budget at the confluence of the Paraná,Paraguay Rivers is updated on the basis of new suspended sediment concentration data, obtained during the 1990s at carefully located cross-sections, after the construction of several large reservoirs. With these data, it was possible to estimate that the suspended sediment load transported by the Upper Paraná River had decreased by 60% due to the influence of the dams. This decrease occurred in spite of the influence of climate change across the Upper Paraná and Paraguay basin, which increased the precipitation and surface runoff. As a consequence of these anthropogenic and natural processes, the Bermejo River (the main source of wash load to the system) accounts for an increasing proportion of the sediment transport along the middle and lower reaches of the Paraná River. The Paraná River currently transports about 120 × 106 t year,1 of wash load, with nearly 90% of this being supplied by the Bermejo. The contribution from the Bermejo is now about 35% larger than its contribution during the 1970s, when it accounted for approximately 60% of the sediment load of the Paraná River. These changes that have occurred over the last 30 years have enhanced the natural asymmetrical distribution of solid and water discharges in the Paraná River basin. Copyright © 2009 John Wiley & Sons, Ltd. [source] Importance of soil surface characteristics on water erosion in a small grazed Sahelian catchmentHYDROLOGICAL PROCESSES, Issue 8 2003H. Karambiri Abstract This study concerns the problem of water erosion in the Sahel. Surface water and sediment yields (suspended matter and bedload) were monitored for 3 years (1998,2000) at the outlet of a small grazed catchment (1·4 ha) in the northern part of Burkina Faso. The catchment consists of about 64% sandy deposits (DRY soil surface type), which support most of the vegetation, and about 34% of crusted bare soils (ERO soil surface type). The annual solid-matter export is more than 90% suspended sediment, varying between 4·0 and 8·4 t ha,1. The bedload represents less than 10% of soil losses. In a single flood event (10 year return period), the sediment yield can reach 4·2 t ha,1. During the period studied, a small proportion (20 to 32%) of the floods was thus responsible for a large proportion (80%) of the solid transport. Seasonal variation of the suspended-matter content was also observed: high mean values (9 g l,1) in June, decreasing in July and stabilizing in August (between 2 and 4 g l,1). This behaviour may be a consequence of a reorganization of the soil surfaces that have been destroyed by trampling animals during the previous long dry season, vegetation growth (increase in the protecting effect of the herbaceous cover) and, to a lesser extent, particle-supply limitation (exhaustion of dust deposits during July). The particle-size distribution in the suspended matter collected at the catchment outlet is 60% made up of clay: fraction ,2 µ m. The contribution of this clay is maximum when the water rises and its kaolinite/quartz ratio is then close to that of the ERO-type surfaces. This indicates that these surfaces are the main source of clay within the catchment. Copyright © 2003 John Wiley & Sons, Ltd. [source] Episodic stream water pH decline during autumn storms following a summer drought in northern SwedenHYDROLOGICAL PROCESSES, Issue 9 2002Hjalmar Laudon Abstract The sources of episodic pH decline in four streams from northern Sweden during the autumn of 1996 were quantified. The events, in which pH dropped by between 1·0 and 2·4 units, were preceded by an extensive summer drought. Total organic carbon, which increased 100% to 160% during peak flow, was the most important driving mechanism of the episodic pH decline. Sulphate, however, was relatively more important during these autumn events than during spring flood. In the sites where past and present anthropogenic deposition were believed to be the main source of sulphate in stream water, sulphate contributed less than 0·3 pH units to the pH decline. In catchments where natural sources of sulphate are known to be important, sulphate contributed up to 0·6 units of pH decline. The export of sulphate during the episodes was two to nine times higher than what was expected from deposition only. The drought preceding the study episodes resulted in some of the lowest ground water levels during the 1990s in that region. The large export of sulphate was probably due to oxidation of natural sulphate bearing minerals in the soil and/or previously deposited sulphate driven by the low ground water level preceding the episodes. Copyright © 2002 John Wiley & Sons, Ltd. [source] Distributed-series compensator for controlling voltage in distribution line with clustered distributed generationsIEEJ TRANSACTIONS ON ELECTRICAL AND ELECTRONIC ENGINEERING, Issue 3 2009Rejeki Simanjorang Member Abstract A method of controlling voltage profile in distribution line with many distributed generations (DGs) using distributed-series compensator (D-SC) is proposed. These DGs are assumed to be clustered photovoltaics (PVs) which are installed at residential area. A large power injected by PVs may result in reverse power flow from PVs to main source, which can lead to overvoltage in the distribution line. To mitigate this problem, it is proposed to install D-SCs close to pole transformer of the distribution line. A D-SC is a series compensator that can imitate characteristic of negative resistance and reactance, while reverse power flow occurs in distribution line. This is carried out by injecting active and reactive power to the distribution line through voltage injection. Providing active power for the D-SC is done by a bidirectional rectifier which is connected to the secondary side of a pole transformer. The effectiveness of the proposed method is achieved by the improvement of voltage profile with small capacity of D-SC and bidirectional rectifier. Theoretical analysis is discussed and simulation results are shown to verify the proposed method. Copyright © 2009 Institute of Electrical Engineers of Japan. Published by John Wiley & Sons, Inc. [source] | ||||||||||||||||||||||||||||||||||||||||||||||||||||