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Selected AbstractsDrinks of the Father: Father's Maximum Number of Drinks Consumed Predicts Externalizing Disorders, Substance Use, and Substance Use Disorders in Preadolescent and Adolescent OffspringALCOHOLISM, Issue 12 2002Stephen M. Malone Background The maximum number of drinks consumed in 24 hr seems to be an interesting phenotype related to alcoholism. The goal of the present study was to determine in an epidemiologic sample whether this measure of drinking history in fathers predicted externalizing behavioral disorders, substance use, and substance abuse in preadolescent and adolescent offspring and whether any such associations would be independent of paternal alcohol dependence diagnoses. Methods Subjects were male and female twins from both age cohorts of the Minnesota Twin Family Study, a population-based longitudinal study, and were approximately 11 or 17 years of age, respectively, upon study enrollment. In both age cohorts, diagnoses of conduct disorder, oppositional defiant disorder, and attention-deficit/hyperactivity disorder served as outcome measures. In addition, measures of lifetime substance use and of the presence of symptoms of substance abuse were derived for the 11-year-old cohort when subjects were approximately 14 years old and diagnoses of substance abuse were derived for the older cohort at age 17. An extension of logistic regression using generalized estimating equations served to assess whether paternal maximum alcohol consumption predicted filial outcome measures. Results Paternal maximum alcohol consumption was consistently associated with conduct disorder, substance use, and substance abuse or dependence in male and female offspring. These associations were not mediated by a primary effect of paternal alcoholism. Conclusions Paternal maximum alcohol consumption was uniquely associated with those offspring characteristics most reliably found in adolescent children of alcoholic parents. This phenotype might supplement DSM diagnoses of alcohol dependence to reduce the number of false positives in genetic research. [source] A comparative analysis of core needle biopsy and fine-needle aspiration cytology in the evaluation of palpable and mammographically detected suspicious breast lesionsDIAGNOSTIC CYTOPATHOLOGY, Issue 11 2007Shailja Garg M.B.B.S. Abstract The present study was undertaken to compare the efficacy of needle core biopsy (NCB) of the breast with fine-needle aspiration cytology (FNAC) in breast lesions (palpable and non-palpable) in the Indian set-up, along with the assessment of tumor grading with both the techniques. Fifty patients with suspicious breast lesions were subjected to simultaneous FNAC and ultrasound-guided NCB following an initial mammographic evaluation. Cases were categorized into benign, benign with atypia, suspicious and malignant groups. In cases of infiltrating duct carcinomas, grading was performed on cytological smears as well as on NCB specimens. Both the techniques were compared, and findings were correlated with radiological and excision findings. Out of 50 cases, 18 were found to be benign and 32 malignant on final pathological diagnosis. Maximum number of patients with benign diagnosis was in the fourth decade (42.11%) and malignant diagnosis in the fourth as well as fifth decade (35.48% each). Sensitivity and specificity of mammography for the diagnosis of malignancy was 84.37% and 83.33%, respectively. Sensitivity and specificity of FNAC for malignant diagnosis was 78.15% and 94.44%, respectively, and of NCB was 96.5% and 100%, respectively. But NCB had a slightly higher specimen inadequacy rate (8%). NCB improved diagnostic categorization over FNAC by 18%. Tumor grading in cases of IDC showed high concordance rate between NCB and subsequent excision biopsy (94.44%) but low concordance rate between NCB and FNAC (59.1%). NCB is superior to FNAC in the diagnosis of breast lesions in terms of sensitivity, specificity, correct histological categorization of the lesions as well as tumor grading. Diagn. Cytopathol. 2007;35:681,689. © 2007 Wiley-Liss, Inc. [source] Effect of Graft Size, Angle, and Intergraft Distance on Dense Packing in Hair TransplantDERMATOLOGIC SURGERY, Issue 6 2005Mohammed Alhaddab MD Background. The maximum number of hair grafts that can be safely implanted in 1 cm2 is still debatable. To our knowledge, no previous report has addressed this issue in three dimensions, taking into account the size, the angle of the graft, and the intergraft distance. Objectives. To study the effect of the size and angle of the graft and the intergraft distance on dense packing. Methods. Using a mathematical formula (the maximum number of hair grafts in 1 cm2 = 33 * cosine), the volume of the recipient area and the volume of the hair graft are calculated, assuming that the surface area of the recipient area is 1 cm2, the diameter of the hair graft is 1 mm, and the intergraft distance is 1.5 mm laterally and 1 mm anteriorly and posteriorly. Results. The maximum number of hair grafts that could be implanted in 1 cm2 at a 90 angle in relation to the skin surface is 33 grafts, at a 60 angle is 28 grafts, and at a 30 angle is 16 grafts. Conclusion. The maximum number of hair grafts that can be implanted in any given recipient area depends on the graft size, the angle or direction of these grafts, and the intergraft distance. Where more space is allowed between the grafts, and the more acute the angle, the fewer hair grafts that can be implanted. [source] Spatial patterns, temporal variability, and the role of multi-nest colonies in a monogynous Spanish desert antECOLOGICAL ENTOMOLOGY, Issue 1 2002Xim Cerdá Abstract 1.,The colonies of the Spanish desert ant Cataglyphis iberica are polydomous. This study describes the temporal and spatial patterns of the polydomy in this species at two different sites, and presents analyses of its role in reducing the attacks of the queen over sexual brood, and in allowing better habitat exploitation. 2. The spatial distribution of nests was clumped while colonies were distributed randomly. Mean nearest neighbour distance ranged from 3.4 to 7.0 m for nests and from 12.3 to 14.1 m for colonies. Distance of foragers searching for food varied among nests: mean values were between 6.1 and 12.6 m. 3. At both sites, the maximum number of nests per colony occurred in summer, during the maximum activity period of the species. Colonies regrouped at the end of this period but overwintered in several nests. 4. Nest renewal in C. iberica colonies was high and showed great temporal variability: nests changed (open, close, re-open) continuously through the activity season and/or among years. The lifetime of up to 55% of nests was only 1,3 months. 5. Polydomy in C. iberica might decrease the interactions between the queen and the sexual brood. In all colonies excavated just before the mating period, the nest containing the queen did not contain any virgin female. Females were in the queenless nests of the colony. 6. The results also suggest that polydomous C. iberica colonies may enhance habitat exploitation because foraging activity per colony increases with nest number. The relationship between total prey input and foraging efficiency and number of nests per colony attains a plateau or even decreases after a certain colony size (four to six nests). This value agrees with the observed mean number of nests per colony in C. iberica. [source] PRECLINICAL STUDY: FULL ARTICLE: The dopamine D3 receptor partial agonist CJB090 and antagonist PG01037 decrease progressive ratio responding for methamphetamine in rats with extended-accessADDICTION BIOLOGY, Issue 3 2010Laura Orio ABSTRACT Previous work suggests a role for dopamine D3-like receptors in psychostimulant reinforcement. The development of new compounds acting selectively at dopamine D3 receptors has opened new possibilities to explore the role of these receptors in animal models of psychostimulant dependence. Here we investigated whether the dopamine D3 partial agonist CJB090 (1,10 mg/kg, i.v) and the D3 antagonist PG01037 (8,32 mg/kg, s.c.) modified methamphetamine (0.05 mg/kg/injection) intravenous self-administration under fixed- (FR) and progressive- (PR) ratio schedules in rats allowed limited (short access, ShA; 1-hour sessions 3 days/week) or extended access (long access, LgA; 6 hour sessions 6 days/week). Under a FR1 schedule, the highest dose of the D3 partial agonist CJB090 selectively reduced methamphetamine self-administration in LgA but not in ShA rats, whereas the full D3 antagonist PG01037 produced no effect in either group. Under a PR schedule of reinforcement, the D3 partial agonist CJB090 reduced the maximum number of responses performed (,breakpoint') for methamphetamine in LgA rats at the doses of 5 and 10 mg/kg, and also it produced a significant reduction in the ShA group at the highest dose. However, the D3 full antagonist PG01037 only reduced PR methamphetamine self-administration in LgA rats at the highest dose of 32 mg/kg with no effect in the ShA group. The results suggest that rats might be more sensitive to pharmacological modulation of dopamine D3 receptors following extended access to methamphetamine self-administration, opening the possibility that D3 receptors play a role in excessive methamphetamine intake. [source] GENETIC STUDY: Interaction of SLC6A4 and DRD2 polymorphisms is associated with a history of delirium tremensADDICTION BIOLOGY, Issue 1 2010Victor M. Karpyak ABSTRACT Several genetic polymorphisms have been reported to be associated with alcohol withdrawal seizures (AWS) and delirium tremens (DT). To replicate and further explore these findings, we investigated the effects of 12 previously reported candidate genetic variations in two groups of alcohol-dependent European Americans with a history of withdrawal, which differed according to the presence (n = 112) or absence (n = 92) of AWS and/or DT. Associations of AWS and/or DT with the genomic and clinical characteristics and gene,gene interaction effects were investigated using logistic regression models. None of the polymorphisms were significantly associated with AWS/DT after correction for multiple testing. However, we found a significant interaction effect of the SLC6A4 promoter polymorphism (5-HTTLPR) and DRD2 exon 8 single nucleotide polymorphism rs6276 on AWS and/or DT history (P = 0.009), which became more significant after adjustment for lifetime maximum number of drinks consumed per 24 hours (P < 0.001). Subsequent analysis revealed an even stronger association of the SLC6A4,DRD2 interaction with DT (P < 0.0001), which remained significant after Bonferroni correction. Results reveal decreased likelihood of DT in alcoholics that carry the DRD2 rs6276 G allele and SLC6A4 LL genotype. This study provides the first evidence to implicate the interaction between serotonin and dopamine neurotransmission in the etiology of DT. Replication is necessary to verify this potentially important finding. [source] Selective exposure to information: the impact of information limitsEUROPEAN JOURNAL OF SOCIAL PSYCHOLOGY, Issue 4 2005Peter Fischer In research on selective exposure to information, people have been found to predominantly seek information supporting rather than conflicting with their opinion. In most of these studies, participants were allowed to search for as many pieces of information as they liked. However, in many situations, the amount of information that people can search for is restricted. We report four experiments addressing this issue. Experiment 1 suggests that objective limits regarding the maximum number of pieces of information the participants could search for increases the preference for selecting supporting over conflicting information. In Experiment 2, just giving participants a cue about information scarcity induces the same effect, even in the absence of any objective restrictions. Finally, Experiment 3 and 4 clarify the underlying psychological process by showing that information limits increase selective exposure to information because information search is guided by the expected information quality, which is basically biased towards supporting information, and information limits act to reinforce this tendency. Copyright © 2005 John Wiley & Sons, Ltd. [source] Critical periods in the life cycle and the effects of a severe spate vary markedly between four species of elmid beetles in a small streamFRESHWATER BIOLOGY, Issue 8 2006J. M. ELLIOTT Summary 1. The chief objectives were: (i) to describe quantitatively the life cycles of four species of Elmidae, Elmis aenea, Esolus parallelepipedus, Oulimnius tuberculatus and Limnius volkmari; (ii) to use life tables to identify critical periods for survival in the life cycle of each species; (iii) to evaluate the immediate and longer-term effects of a severe spate on densities of the four species. Monthly samples were taken over 63 months at two contrasting sites in a small stream: one in a deep section with macrophytes abundant, and the other in a shallow stony section. 2. There were five larval instars for O. tuberculatus, seven for L. volkmari and six for the other two species. The life cycle of each species took 1 year from egg hatching (chiefly in June for E. aenea and O. tuberculatus, and July for the other species) to pupation in the stream bank and a further year before the adults in the stream matured and laid their eggs. Mature adults were present in most months, but were rare or absent in January and February and attained maximum densities in April for O. tuberculatus and May for the other species. 3. Laboratory experiments provided data on egg hatching and pupation periods and the number of eggs laid per female. Life tables compared maximum numbers per square metre for key life-stages. Within each species, mortality rates between adjacent life-stages were fairly constant among six cohorts and between sites, in spite of large differences in numbers. The only exception for all species was the high adult, but not larval, mortality during a severe spate. 4. Standardised life tables, starting with 1000 eggs, identified key life-stages with the highest mortality, namely the early life-stages for E. aenea (36% mortality), start of the overwintering period to pupation for O. tuberculatus (41%) and L. volkmari (51%), start of pupation to the maximum number of immature adults for E. parallelepipedus (41%) and between the maximum numbers of immature and mature adults for O. tuberculatus (41%). Therefore, critical periods for survival in the life cycle differed between species, presumably because of their different ecological requirements. Similarly, the effects of the spate on adult mortality, and hence egg production, varied between species, being most severe and long-term for E. aenea and O. tuberculatus, less severe for E. parallelepipedus and least severe with a rapid recovery for L. volkmari. Possible reasons for these discrepancies are discussed, but more data are required on the food and microhabitat requirements of the elmids before satisfactory explanations can be found. [source] The effect of fixed-count subsampling on macroinvertebrate biomonitoring in small streamsFRESHWATER BIOLOGY, Issue 2 2000Craig P. Doberstein Summary 1When rigorous standards of collecting and analysing data are maintained, biological monitoring adds valuable information to water resource assessments. Decisions, from study design and field methods to laboratory procedures and data analysis, affect assessment quality. Subsampling - a laboratory procedure in which researchers count and identify a random subset of field samples - is widespread yet controversial. What are the consequences of subsampling? 2To explore this question, random subsamples were computer generated for subsample sizes ranging from 100 to 1000 individuals as compared with the results of counting whole samples. The study was done on benthic invertebrate samples collected from five Puget Sound lowland streams near Seattle, WA, USA. For each replicate subsample, values for 10 biological attributes (e.g. total number of taxa) and for the 10-metric benthic index of biological integrity (B-IBI) were computed. 3Variance of each metric and B-IBI for each subsample size was compared with variance associated with fully counted samples generated using the bootstrap algorithm. From the measures of variance, we computed the maximum number of distinguishable classes of stream condition as a function of sample size for each metric and for B-IBI. 4Subsampling significantly decreased the maximum number of distinguishable stream classes for B-IBI, from 8.2 for fully counted samples to 2.8 classes for 100-organism subsamples. For subsamples containing 100,300 individuals, discriminatory power was low enough to mislead water resource decision makers. [source] Evaluation of tissue culture response from mature seeds of Panicum spp.GRASSLAND SCIENCE, Issue 3 2008Mi-Suk Seo Abstract The genus Panicum contains important warm-season forage grasses and species with potential as biomass crops. We selected Panicum genotypes with high response to tissue culture for genetic improvement. The highest frequency of callus induction from mature seed of Panicum maximum cultivar Natsukaze was obtained on MS medium containing 4.0 mg L,1 2,4-dichlorophenoxyacetic acid and solidified with 0.3% Gelrite. We compared germination frequencies and callus induction capacities among 24 genotypes of 11 Panicum species on this medium. Callus induction frequencies varied among genotypes. Those with high germination frequencies generally had high callus induction frequencies. On the other hand, especially in P. maximum, the callus induction ratio (callus induction frequency/germination frequency) depended on the reproductive mode and ploidy. The callus induction ratio of three sexual accessions of P. maximum were very low compared to apomictic accessions, and besides, a tetraploid sexual accession Noh PL1 had very low germination and callus induction frequencies. Callus induction and regeneration capacities were independent of each other. For shoot regeneration, we transferred callus derived from the 24 genotypes onto MS medium supplemented with 1.0 mg L,1 kinetin and 0.4% Gelrite. Six of the genotypes regenerated plantlets. Among them, Panicum meyerianum produced the highest shoot regeneration frequency of 61.6% and the maximum number of shoots callus,1 in the shortest time. The callus of P. meyerianum also showed vigorous proliferation. We thus selected high-response genotypes of P. meyerianum. [source] Array-MLPA: comprehensive detection of deletions and duplications and its application to DMD patients,HUMAN MUTATION, Issue 1 2008Fanyi Zeng Abstract Multiplex ligation-dependent probe amplification (MLPA) is widely used to screen genes of interest for deletions and duplications. Since MLPA is usually based on size-separation of the amplification products, the maximum number of target sequences that can be screened in parallel is usually limited to ,40. We report the design of a robust array-based MLPA format that uses amplification products of essentially uniform size (100,120,bp) and distinguishes between them by virtue of incorporated tag sequences. We were thus able to increase probe complexity to 124, with very uniform product yields and signals that have a low coefficient of variance. The assay designed was used to screen the largest set studied so far (249 patients) of unrelated Duchenne muscular dystrophy (DMD) cases from the Chinese population. In a blind study we correctly assigned 98% of the genotypes and detected rearrangements in 181 cases (73%); i.e., 163 deletions (65%), 13 duplications (5%), and five complex rearrangements (2%). Although this value is significantly higher for Chinese patients than previously reported, it is similar to that found for other populations. The location of the rearrangements (76% in the major deletion hotspot) is also in agreement with other findings. The 96-well flow-through microarray system used in this research provides high-throughput and speed; hybridization can be completed in 5 to 30,minutes. Since array processing and data analysis are fully automated, array-MLPA should be easy to implement in a standard diagnostic laboratory. The universal array can be used to analyze any tag-modified MLPA probe set. Hum Mutat 29(1), 190,197, 2008. © 2007 Wiley-Liss, Inc. [source] Adaptive preconditioning of linear stochastic algebraic systems of equationsINTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING, Issue 11 2007Y. T. Feng Abstract This paper proposes an adaptively preconditioned iterative method for the solution of large-scale linear stochastic algebraic systems of equations with one random variable that arise from the stochastic finite element modelling of linear elastic problems. Firstly, a Rank-one posteriori preconditioner is introduced for a general linear system of equations. This concept is then developed into an effective adaptive preconditioning scheme for the iterative solution of the stochastic equations in the context of a modified Monte Carlo simulation approach. To limit the maximum number of base vectors used in the scheme, a simple selection criterion is proposed to update the base vectors. Finally, numerical experiments are conducted to assess the performance of the proposed adaptive preconditioning strategy, which indicates that the scheme with very few base vectors can improve the convergence of the standard Incomplete Cholesky preconditioning up to 50%. Copyright © 2006 John Wiley & Sons, Ltd. [source] Statistical downscaling model based on canonical correlation analysis for winter extreme precipitation events in the Emilia-Romagna regionINTERNATIONAL JOURNAL OF CLIMATOLOGY, Issue 4 2008A. Busuioc Abstract Optimum statistical downscaling models for three winter precipitation indices in the Emilia-Romagna region, especially related to extreme events, were investigated. For this purpose, the indices referring to the number of events exceeding the long-term 90 percentile of rainy days, simple daily intensity and maximum number of consecutive dry days were calculated as spatial averages over homogeneous sub-regions identified by the cluster analysis. The statistical downscaling model (SDM) based on the canonical correlation analysis (CCA) was used as downscaling procedure. The CCA was also used to understand the large-/regional-scale mechanisms controlling precipitation variability across the analysed area, especially with respect to extreme events. The dynamic (mean sea-level pressure-SLP) and thermodynamic (potential instability-,Q and specific humidity-SH) variables were considered as predictors (either individually or together). The large-scale SLP can be considered a good predictor for all sub-regions in the dry index case and for two sub-regions in the case of the other two indices, showing the importance of dynamical forcing in these cases. Potential instability is the best predictor for the highest mountain region in the case of heavy rainfall frequency, when it can be considered as a single predictor. The combination of dynamic and thermodynamic predictors improves the SDM's skill for all sub-regions in the dry index case and for some sub-regions in the simple daily intensity index case. The selected SDMs are stable in time only in terms of correlation coefficient for all sub-regions for which they are skilful and only for some sub-regions in terms of explained variance. The reasons are linked to the changes in the atmospheric circulation patterns influencing the local rainfall variability in Emilia-Romagna as well as the differences in temporal variability over some sub-regions and sub-intervals. It was concluded that the average skill over an ensemble of the most skilful and stable SDMs for each region/sub-interval gives more consistent results. Copyright © 2007 Royal Meteorological Society [source] Toward better scoring metrics for pseudo-independent modelsINTERNATIONAL JOURNAL OF INTELLIGENT SYSTEMS, Issue 8 2004Y. Xiang Learning belief networks from data is NP-hard in general. A common method used in heuristic learning is the single-link lookahead search. When the problem domain is pseudo-independent (PI), the method cannot discover the underlying probabilistic model. In learning these models, to explicitly trade model accuracy and model complexity, parameterization of PI models is necessary. Understanding of PI models also provides a new dimension of trade-off in learning even when the underlying model may not be PI. In this work, we adopt a hypercube perspective to analyze PI models and derive an improved result for computing the maximum number of parameters needed to specify a full PI model. We also present results on parameterization of a subclass of partial PI models. © 2004 Wiley Periodicals, Inc. Int J Int Syst 19: 749,768, 2004. [source] An artificial neural network satisfiability testerINTERNATIONAL JOURNAL OF INTELLIGENT SYSTEMS, Issue 12 2001Tatiana Tambouratzis An artificial neural network tester for the satisfiability problem of propositional calculus is presented. Satisfiability is treated as a constraint satisfaction optimization problem and, contrary to most of the existing satisfiability testers, the expressions are converted into disjunctive normal form before testing. The artificial neural network is based on the principles of harmony theory. Its basic characteristics are the simulated annealing procedure and the harmony function; the latter constitutes a measure of the satisfiability of the expression under the current truth assignment to its variables. The tester is such that: (a) the satisfiability of any expression is determined; (b) a truth assignment to the variables of the expression is output which renders true the greatest possible number of clauses; (c) all the truth assignments which render true the maximum number of clauses can be produced. © 2001 John Wiley & Sons, Inc. [source] Dimensioning and optimization of push-to-talk over cellular serverINTERNATIONAL JOURNAL OF NETWORK MANAGEMENT, Issue 1 2008M. T. Alam The PoC (push-to-talk over cellular) application allows point-to-point or point-to-multipoint voice communication between mobile network users. The related work over PoC focuses on the performance analysis only and is ignorant about dimensioning a PoC controller to optimize revenue for service providers. In this paper, we dimension a PoC service with the assumption that the network grade of service is provided. The on-demand sessions should have access priority over pre-established sessions. A PoC controller should be able to terminate a PoC session based on an optimal timer. Moreover, the number of simultaneous session initiations by a PoC client is also a configurable parameter. We derived relations to provide access priority to special PoC sessions based on available transmit/receive units (TRU) and threshold level. Load sharing expressions are reported for a PoC controller using the Lagrange multiplier technique. A simple relation to control the PoC session timer is proposed. Finally, the derivation of maximum number of allowable simultaneous sessions is depicted using two-state Markov models. Numerical results have been computed with the corresponding derivation to provide a useful insight into the system behaviour. A PoC service can benefit from these optimal values of our work during the busy hour. Copyright © 2007 John Wiley & Sons, Ltd. [source] On ACK filtering on a slow reverse channelINTERNATIONAL JOURNAL OF SATELLITE COMMUNICATIONS AND NETWORKING, Issue 3 2003Chadi Barakat Abstract Acknowledgement (ACK) filtering has been proposed as a technique to alleviate the congestion at the input of a slow channel located on the reverse path of a TCP connection. Old ACKs waiting at the input of the slow channel are erased when new ACKs are to be queued. In the literature the case of one-ACK per connection at a time has been studied. In this paper we show that this is too aggressive for short transfers where ACKs arrive in bursts due to the slow start phase, and where the TCP source needs to receive the maximum number of ACKs to increase fast its window. We study first static filtering where a certain ACK queue length is allowed. We show analytically how this length needs to be chosen. We present then some algorithms that adapt the filtering of ACKs as a function of the slow channel utilization rather than the ACK queue length. These algorithms provide a good compromise between reducing the ACK queueing delay and passing a large number of ACKs that guarantee a fast window increase. Copyright © 2003 John Wiley & Sons, Ltd. [source] Assessment of survival of Listeria monocytogenes, Salmonella Infantis and Enterococcus faecalis artificially inoculated into experimental waste or compostJOURNAL OF APPLIED MICROBIOLOGY, Issue 5 2010N. Paniel Abstract Aims:, To evaluate survival of pathogenic strains, Listeria monocytogenes and Salmonella Infantis and a sanitation indicator Enterococcus faecalis in composts at different stages of the composting process and during storage. Methods and Results:, The studied pathogenic and indicator strains, originally isolated from compost, were inoculated into compost samples from the various stages of the composting process. During incubation, indigenous microflora diversity was monitored with DGGE analysis. After 90 days of incubation, strain survival was observed in compost sampled before the beginning of the cooling phase, and DGGE analysis demonstrated an increase of microbial diversity up to the cooling phase. However, inoculated strains were not detected in composts after 30, 60 or 90 days of incubation in compost sampled after the start of the cooling phase. Microbial diversity also became stable, and DGGE profiles reached a maximum number of bands at this stage. Conclusions:, Strain survival was not observed in stabilized composts. The cooling phase seems to be the turning point for pathogen survival and at this stage the indigenous microflora appeared to play a significant role in suppression. Significance and Impact of the Study:, The importance of indigenous microflora in the survival of pathogens in four different composts was demonstrated. Stabilized composts were recommended for spreading on land. [source] Naringin, a grapefruit flavanone, protects V79 cells against the bleomycin-induced genotoxicity and decline in survivalJOURNAL OF APPLIED TOXICOLOGY, Issue 2 2007Abhinav Jagetia Abstract The effect of naringin, a grapefruit flavonone was studied on bleomycin-induced genomic damage and alteration in the survival of cultured V79 cells. Exposure of V79 cells to bleomycin induced a concentration dependent elevation in the frequency of binucleate cells bearing micronuclei (MNBNC) and a maximum number of MNBNCs were observed in the cells treated with 50 ,g ml,1 bleomycin, the highest concentration evaluated. This genotoxic effect of bleomycin was reflected in the cell survival, where a concentration dependent decline was observed in the cells treated with different concentrations of bleomycin. Treatment of cells with 1 mm naringin before exposure to different concentrations of bleomycin arrested the bleomycin-induced decline in the cell survival accompanied by a significant reduction in the frequency of micronuclei when compared with bleomycin treatment alone. The cell survival and micronuclei induction were found to be inversely correlated. The repair kinetics of DNA damage induced by bleomycin was evaluated by exposing the cells to 10 ,g ml,1 bleomycin using single cell gel electrophoresis. Treatment of V79 cells with bleomycin resulted in a continuous increase in DNA damage up to 6 h post-bleomycin treatment as evident by migration of more DNA into the tails (% tail DNA) of the comets and a subsequent increase in olive tail moment (OTM), an index of DNA damage. Treatment of V79 cells with 1 mm naringin reduced bleomycin-induced DNA damage and accelerated DNA repair as indicated by a reduction in % tail DNA and OTM with increasing assessment time. A maximum reduction in the DNA damage was observed at 6 h post-bleomycin treatment, where it was 5 times lower than bleomycin alone. Our study, which was conducted on the basis of antioxidant, free radical scavenging and metal chelating properties of naringin demonstrates that naringin reduced the genotoxic effects of bleomycin and consequently increased the cell survival and therefore may act as a chemoprotective agent in clinical situations. Copyright © 2006 John Wiley & Sons, Ltd. [source] Use of dispersal,vicariance analysis in biogeography , a critiqueJOURNAL OF BIOGEOGRAPHY, Issue 1 2010Ullasa Kodandaramaiah Abstract Aim, Analytical methods are commonly used to identify historical processes of vicariance and dispersal in the evolution of taxa. Currently, dispersal,vicariance analysis implemented in the software diva is the most widely used method. Despite some recognized shortcomings of the method, it has been treated as error-free in many cases and used extensively as the sole method to reconstruct histories of taxa. In light of this, an evaluation of the limitations of the method is needed, especially in relation to several newer alternatives. Methods, In an approach similar to simulation studies in phylogenetics, I use hypothetical taxa evolving in specific geological scenarios and test how well diva reconstructs their histories. Results,diva reconstructs histories accurately when evolution has been simple; that is, where speciation is driven mainly by vicariance. Ancestral areas are wrongly identified under several conditions, including complex patterns of dispersals and within-area speciation events. Several potentially serious drawbacks in using diva for inferences in biogeography are discussed. These include the inability to distinguish between contiguous range expansions and across-barrier dispersals, a low probability of invoking extinctions, incorrect constraints set on the maximum number of areas by the user, and analysing the ingroup taxa without sister groups. Main conclusions, Most problems with inferences based on diva are linked to the inflexibility and simplicity of the assumptions used in the method. These are frequently invalid, resulting in spurious reconstructions. I argue that it might be dangerous to rely solely on diva optimization to infer the history of a group. I also argue that diva is not ideally suited to distinguishing between dispersal and vicariance because it cannot a priori take into account the age of divergences relative to the timing of barrier formation. I suggest that other alternative methods can be used to corroborate the findings in diva, increasing the robustness of biogeographic hypotheses. I compare some important alternatives and conclude that model-based approaches are promising. [source] Shifts in the ecological behaviour of plant species between two distant regions: evidence from the base richness gradient in miresJOURNAL OF BIOGEOGRAPHY, Issue 2 2008Petra Hájková Abstract Aim, Water pH and conductivity are known to be major environmental factors controlling the species composition of nutrient-poor wetlands. Based on the analysis of two large data sets of species co-occurrence, sampled along the entire pH/calcium gradient, we explored whether species exhibit similar or different ecological behaviour in the two regions. Location, West Carpathians (central Europe) and Bulgaria (south-eastern Europe), situated 800 km apart. Bulgaria represents a range margin for many mire species. Methods, The probability of occurrence of the 41 most common species along the pH and conductivity gradients was assessed using logistic regression fitted by means of generalized additive models. The species optimum and amplitude were determined. To check the possible effect of competitive release, we estimated where the potential maximum number of species (maximum overlap in realized niches) occurs along the base richness gradient. Results, Most of the 41 frequently occurring species showed a significant response to water pH and ln-transformed conductivity (approximating total mineral richness) in both regions. Eight species showed a shift in pH optimum greater than one unit, while 12 species showed the same or a larger shift along the conductivity gradient. Nearly all these striking shifts were connected to an extension of species tolerance towards mineral-poor acid habitats in Bulgaria, which causes links between species and measured factors to be conspicuously weaker in Bulgaria than in the West Carpathians. Regarding ecological amplitude, 24 species exhibited a wider tolerance to water conductivity in the West Carpathians, whereas 17 species exhibited a wider tolerance in Bulgaria. Main conclusions, A distinctive variation in the realized niche was observed in a large portion of the species examined. Niche shifts between local populations of the same species were similar to those of closely related vicariant species. Ecotypic adaptation within species is a possible explanation for this pattern. Other possible explanations (competitive release, specific habitat conditions, compensation for climate) seem to be less justified. The local populations of rich-fen species may have adapted to mineral-poor acid conditions in the high crystalline mountains of Bulgaria during dry periods of pleniglacials. Nomenclature,Marhold & Hindák (1998); for Balkan elements not included in this source, Andreev et al. (1992). [source] Structures and stability of lithium monosilicide clusters SiLin (n = 4,16): What is the maximum number, magic number, and core number for lithium coordination to silicon?JOURNAL OF COMPUTATIONAL CHEMISTRY, Issue 11 2008Ning He Abstract In the coordination, hypervalent and cluster chemistry, three important characteristic properties are the maximum coordination number, magic number, and core coordination number. Yet, few studies have considered these three numbers at the same time for an MLn cluster with n larger than 8. In this article, we systematically studied the three properties of SiLin (n = 4,16) clusters at the B3LYP/6-31G(d), B3LYP/6-311++G(2d), and CCSD(T)/6-311++G(3df)//B3LYP/6-311++G(2d) (for energy only) levels. Various isomeric forms with different symmetries were calculated. For each SiLin (n = 4,9), silicon cohesive energy (cE) from SiLin , Si + Lin reaction, vertical ionization potential (vIP), and vertical electron affinity (vEA) were obtained for the lowest-energy isomer. We found that the maximum Li-coordination number of Si is 9, which is the largest number among the known MLin clusters. All cE, vIP, and vEA values predicted that 6 is the magic Li-coordination number of Si. For small SiLin (n , 6) clusters, Li atoms favor direct coordination to Si, whereas for larger SiLin (n , 7) clusters, there is a core cluster that is surrounded by excessive Li atoms. The core Li-coordination number is 6 for SiLin (n = 7,8), 7 for SiLin (n = 9,10), 8 for SiLin (n = 11,15) and 9 for SiLin (n , 16). Through the calculations, we verified the relationship between the structure and stability of SiLin with the maximum coordination number, magic number, and core coordination number. © 2008 Wiley Periodicals, Inc. J Comput Chem, 2008 [source] Water temperature fluctuations and territoriality in the intertidal zone: two possible explanations for the elevational distribution of body size in Graus nigraJOURNAL OF FISH BIOLOGY, Issue 2 2002C. E. Hernández On the central coast of Chile, distribution of body size in Graus nigra varied with tidal pool height. With the objective of determining whether environmental temperature is one of the possible causes which explains the observed distribution pattern, two behavioural responses were analysed during an experimental period of increasing water temperature: number of opercular movements (an indirect measure of energy expenditure) and activity levels. The interactions of temperature × time and body size × time had a significant effect on the number of opercular movements. At low temperatures (13,15° C), large fish reached a maximum number of opercular movements, while small fish reached a maximum only at high temperatures (23,25° C). The interaction temperature × time had a significant effect on activity levels of different body sizes. In general, large fish appeared to be less active than small fish, however, at very high temperatures (24,26° C) all individuals increased their activity levels. These data indicate that small fish are acclimatized to live in a wider range of temperatures (13,23° C), and, for fish of all body sizes, the highest temperatures (23,26° C) probably constitute a suboptimal microhabitat. Strong territoriality was observed, with large individuals displacing smaller individuals. These data suggest that temperature is an important factor in explaining why large individuals are not present in high tidal pools (high temperatures), whereas territoriality explains why small individuals are not in low tidal pools (habitat of large individuals). [source] Families of pairs of graphs with a large number of common cardsJOURNAL OF GRAPH THEORY, Issue 2 2010Andrew Bowler Abstract The vertex-deleted subgraph G,v, obtained from the graph G by deleting the vertex v and all edges incident to v, is called a card of G. The deck of G is the multiset of its unlabelled vertex-deleted subgraphs. The number of common cards of G and H (or between G and H) is the cardinality of the multiset intersection of the decks of G and H. In this article, we present infinite families of pairs of graphs of order n , 4 that have at least common cards; we conjecture that these, along with a small number of other families constructed from them, are the only pairs of graphs having this many common cards, for sufficiently large n. This leads us to propose a new stronger version of the Reconstruction Conjecture. In addition, we present an infinite family of pairs of graphs with the same degree sequence that have common cards, for appropriate values of n, from which we can construct pairs having slightly fewer common cards for all other values of n,10. We also present infinite families of pairs of forests and pairs of trees with and common cards, respectively. We then present new families that have the maximum number of common cards when one graph is connected and the other disconnected. Finally, we present a family with a large number of common cards, where one graph is a tree and the other unicyclic, and discuss how many cards are required to determine whether a graph is a tree. © 2009 Wiley Periodicals, Inc. J Graph Theory 63: 146,163, 2010 [source] On the maximum number of cycles in a planar graphJOURNAL OF GRAPH THEORY, Issue 3 2008R. E. L. Aldred Abstract Let G be a graph on p vertices with q edges and let r,=,q,,,p,=,1. We show that G has at most cycles. We also show that if G is planar, then G has at most 2r,,,1,=,o(2r,,,1) cycles. The planar result is best possible in the sense that any prism, that is, the Cartesian product of a cycle and a path with one edge, has more than 2r,,,1 cycles. © Wiley Periodicals, Inc. J. Graph Theory 57: 255,264, 2008 [source] Forcing highly connected subgraphsJOURNAL OF GRAPH THEORY, Issue 4 2007Maya Jakobine Stein Abstract A theorem of Mader states that highly connected subgraphs can be forced in finite graphs by assuming a high minimum degree. We extend this result to infinite graphs. Here, it is necessary to require not only high degree for the vertices but also high vertex-degree (or multiplicity) for the ends of the graph, that is, a large number of disjoint rays in each end. We give a lower bound on the degree of vertices and the vertex-degree of the ends which is quadratic in k, the connectedness of the desired subgraph. In fact, this is not far from best possible: we exhibit a family of graphs with a degree of order 2k at the vertices and a vertex-degree of order k log k at the ends which have no k -connected subgraphs. Furthermore, if in addition to the high degrees at the vertices, we only require high edge-degree for the ends (which is defined as the maximum number of edge-disjoint rays in an end), Mader's theorem does not extend to infinite graphs, not even to locally finite ones. We give a counterexample in this respect. But, assuming a lower bound of at least 2k for the edge-degree at the ends and the degree at the vertices does suffice to ensure the existence (k + 1)- edge -connected subgraphs in arbitrary graphs. © 2006 Wiley Periodicals, Inc. J Graph Theory 54: 331,349, 2007 [source] A new upper bound on the cyclic chromatic number,JOURNAL OF GRAPH THEORY, Issue 1 2007O. V. Borodin Abstract A cyclic coloring of a plane graph is a vertex coloring such that vertices incident with the same face have distinct colors. The minimum number of colors in a cyclic coloring of a graph is its cyclic chromatic number ,c. Let ,* be the maximum face degree of a graph. There exist plane graphs with ,c = ,3/2 ,*,. Ore and Plummer [5] proved that ,c , 2, ,*, which bound was improved to ,9/5, ,*, by Borodin, Sanders, and Zhao [1], and to ,5/3,,*, by Sanders and Zhao [7]. We introduce a new parameter k*, which is the maximum number of vertices that two faces of a graph can have in common, and prove that ,c , max {,* + 3,k* + 2, ,* + 14, 3, k* + 6, 18}, and if ,* , 4 and k* , 4, then ,c , ,* + 3,k* + 2. © 2006 Wiley Periodicals, Inc. J Graph Theory [source] On two Turán NumbersJOURNAL OF GRAPH THEORY, Issue 3 2006Jian Shen Abstract Let H(3,1) denote the complete bipartite graph K3,3 with an edge deleted. For given graphs G and F, the Turán numbers (G, F) denote the maximum number of edges in a subgraph of G containing no copy of F. We prove that ) and that , which improve earlier results of Mubayi-West [13] and Füredi-West [10], respectively. The generalized Ramsey parameter r(G, F, q) denotes the minimum number of colors needed to edge-color G such that every copy of F in G receives at least q colors. As an immediate consequence, the above results imply that and that , respectively. These improve the corresponding bounds given by Mubayi [12] recently. © 2005 Wiley Periodicals [source] Genetic Diversity of Landraces in Gossypium arboreum L. Race sinense Assessed with Simple Sequence Repeat MarkersJOURNAL OF INTEGRATIVE PLANT BIOLOGY, Issue 9 2006Wang-Zhen Guo Abstract Asiatic cotton (Gossypium arboreum L.) is an "Old World" cultivated cotton species, the sinense race of which is planted extensively in China. This species is still used in the current tetraploid cotton breeding program as an elite germplasm line, and is also used as a model for genomic research in Gossypium. In the present study, 60 cotton microsatellite markers, averaging 4.6 markers for each A-genome chromosome, were chosen to assess the genetic diversity of 109 accessions. These included 106 G. arboreum landraces, collected from 18 provinces throughout four Asiatic cotton-growing regions in China. A total of 128 alleles were detected, with an average of 2.13 alleles per locus. The largest number of alleles, as well as the maximum number of polymorphic loci, was detected in the A03 linkage group. No polymorphic alleles were detected on chromosome 10. The polymorphism information content for the 22 polymorphic microsatellite loci varied from 0.52 to 0.98, with an average of 0.89. Genetic diversity analysis revealed that the landraces in the Southern region had more genetic variability than those from the other two regions, and no significant difference was detected between landraces in the Yangtze and the Yellow River Valley regions. These findings are consistent with the history of sinense introduction, with the Southern region being the presumed center of origin for Chinese Asiatic cotton, and with subsequent northeastward extension to the Yangtze and Yellow River Valleys. Cluster analysis, based on simple sequence repeat data for 60 microsatellite loci, clearly differentiated Vietnamese and G. herbaceum landraces from the sinense landrace. No relationship between inter-variety similarity and geographical ecological region was observed. The present findings indicate that the Southern region landraces may have been directly introduced into the provinces in the middle and lower Yangtze River Valley, where Asiatic cotton was most extensively grown, and further race sinense crops were subsequently produced. (Managing editor: Ya-Qin Han) [source] Efficient MILP formulations for the simultaneous optimal peptide tag design and downstream processing synthesisAICHE JOURNAL, Issue 9 2009Joăo M. Natali Abstract Novel and efficient linear formulations are developed for the problem of simultaneously performing an optimal synthesis of chromatographic protein purification processes, and the concomitant selection of peptide purification tags, that result in a maximal process improvement. To this end, two formulations are developed for the solution of this problem: (1) a model that minimizes both the number of chromatographic steps in the final purification process flow sheet and the composition of the tag, by use of weighted objectives, while satisfying minimal purity requirements for the final product; and (2) a model that attempts to find the maximal attainable purity under constraints on the maximum number of separation techniques and tag size. Both models are linearized using a previously developed strategy for obtaining optimal piecewise linear approximations of nonlinear functions. Proposed are models to two case studies based on protein mixtures with different numbers of proteins. Results show that the models are capable of solving to optimality all the implemented cases with computational time requirements of under 1 s, on average. The results obtained are further compared with previous nonlinear and linear models attempting to solve the same problem, and, thus, show that the approach represents significant gains in robustness and efficiency. © 2009 American Institute of Chemical Engineers AIChE J, 2009 [source] | ||||||||||||||||||||||||||||||||||