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Local Density (local + density)
Terms modified by Local Density Selected AbstractsCell Migration: Guided Cell Migration on Microtextured Substrates with Variable Local Density and Anisotropy (Adv. Funct.ADVANCED FUNCTIONAL MATERIALS, Issue 10 2009Mater. A novel microtextured cell substrate with variable local density and anisotropy as a platform for guided cell migration is presented by A. Levchenko, K.-Y. Suh, et al. on page 1579. A simple, scalable, and cost-effective technique, capillary force lithography, is used to fabricate precise microtopographic features on an optically transparent glass coverslip. Live cell motility is found to be extremely sensitive to variation in the local density and anisotropy of rectangular lattices, with cell elongation and speed decreasing on a symmetric lattice. Cells integrate orthogonal contact guidance cues when determining the direction of their orientation and movement. [source] Guided Cell Migration on Microtextured Substrates with Variable Local Density and AnisotropyADVANCED FUNCTIONAL MATERIALS, Issue 10 2009Deok-Ho Kim Abstract This work reports the design of and experimentation with a topographically patterned cell culture substrate of variable local density and anisotropy as a facile and efficient platform to guide the organization and migration of cells in spatially desirable patterns. Using UV-assisted capillary force lithography, an optically transparent microstructured layer of a UV curable poly(urethane acrylate) resin is fabricated and employed as a cell-culture substrate after coating with fibronectin. With variable local pattern density and anisotropy present in a single cell-culture substrate, the differential polarization of cell morphology and movement in a single experiment is quantitatively characterized. It is found that cell shape and velocity are exquisitely sensitive to variation in the local anisotropy of the two-dimensional rectangular lattice arrays, with cell elongation and speed decreasing on symmetric lattice patterns. It is also found that cells could integrate orthogonal spatial cues when determining the direction of cell orientation and movement. Furthermore, cells preferentially migrate toward the topographically denser areas from sparser ones. Consistent with these results, it is demonstrated that systematic variation of local densities of rectangular lattice arrays enable a planar assembly of cells into a specified location. It is envisioned that lithographically defined substrates of variable local density and anisotropy not only provide a new route to tailoring the cell-material interface but could serve as a template for advanced tissue engineering. [source] The influence of management regime and altitude on the population structure of Succisapratensis: implications for vegetation monitoringJOURNAL OF APPLIED ECOLOGY, Issue 4 2001Christoph Bühler Summary 1,Environmental change and land use may alter the vegetation typical of wetland habitats. However, commonly used techniques for vegetation monitoring that are based on species composition are often not suitable to detect gradual changes in the structure of vegetation at an early stage. In this study we tested if this methodical deficiency could be overcome by observation of the stage structure of a perennial target species. 2,We studied the density and frequency distribution of four phenological stages of the perennial plant Succisapratensis in 24 calcareous fens in eastern Switzerland. These fens differed in management type (mowing, cattle-grazing) and altitude (low, medium, high). Among grazed fens, the intensity of management was quantified by direct observation. Species composition and canopy structure of the plant community surrounding S. pratensis were also measured. 3,High altitude had a positive effect on the density of adult plants of S. pratensis only in mown fens, whereas in grazed fens adult density was highest at medium altitude. 4,Local densities of seedlings and vegetative adults within a fen were higher in mown than in grazed fens, and lower in fens of the lowest altitude level than of the two higher ones. However, there were no differences in the relative proportions of all four phenological stages among main factors except that significantly fewer seedlings occurred in fens of the lowest altitude level. 5,It is the intensity rather than the mere type of management regime that is crucial for shaping populations of S. pratensis: for grazed fens, there is a negative relationship between intensity of grazing and density of adult plants of S. pratensis. Moreover, the number, the relative proportion of seedlings and the seed-set are all negatively correlated with grazing intensity. 6,The species composition of the plant community, but not its physical structure, was significantly related to the relative proportion of seedlings of S. pratensis, which supports the indicator qualities of the target species. 7,Monitoring the population structure of one or several target species provides important indicator information about the stability of a whole plant community. For the target-species approach we propose to use characteristic but frequently and steadily occurring species instead of rare or endangered ones. [source] Testing abundance-range size relationships in European carabid beetles (Coleoptera, Carabidae)ECOGRAPHY, Issue 5 2003D. Johan Kotze Four of the eight hypotheses proposed in the literature for explaining the relationship between abundance and range size (the sampling artifact, phylogenetic non-independence, range position and resource breadth hypotheses) were tested by using atlas data for carabid beetles (Coleoptera, Carabidae) from Belgium, Denmark and the Netherlands. A positive relationship between abundance and partial range size was found in all three countries, and the variation in abundance was lower for widespread species. Analysis of the data did not support three of the proposed hypotheses, but did support the resource breadth hypothesis (species having broader environmental tolerances and being able to use a wider range or resources will have higher local densities and be more widely distributed than more specialised species). Examination of species' characteristics revealed that widespread species are generally large bodied, generalists (species with wide niche breadths occurring in a variety of habitat types) and are little influenced by human-altered landscapes, while species with restricted distributions are smaller bodied, specialists (species with small niche breadths occurring in only one or two habitat types), and favour natural habitat. Landscape alteration may be an important factor influencing carabid abundance and range size in these three countries with a long history of human-induced environmental changes. [source] Greater cuticular melanism is not associated with greater immunogenic response in adults of the polymorphic mountain stone weta, Hemideina maoriECOLOGICAL ENTOMOLOGY, Issue 6 2003T. Robb Abstract., 1.,Greater immune function is associated with the high-density melanic phase of polyphenic insects, appearing to compensate for density-dependent increases in susceptibility to parasites and/or pathogens. Other types of discrete variation in cuticular colour occur in insects (which may or may not be associated with melanin pigmentation), but whether this variation is predictive of immune ability has not been investigated. 2.,In the mountain stone weta Hemideina maori, a black morph and yellow banded morph occur. These morphs are not seasonally polyphenic and have discrete haplotype genetic markers. Black individuals are typically found at lower local densities than yellow individuals, contrary to relations between cuticular melanism and density seen in polyphenic insects. 3.,Yellow males and females had greater melanotic encapsulation responses upon immune challenge than did black males and females, but these differences were not associated with differences in temperature selection between morphs. Morph differences in melanotic encapsulation responses were somewhat related to differences between morphs in haemocyte concentrations. 4.,These results indicate that a common form of immune expression is not heightened with dark coloration in the mountain stone weta. Thus, earlier findings of greater immunity associated with darker cuticles in phase polyphenic insects cannot be extended to insects with other forms of discrete colour variation. These findings will help in elucidating causes and consequences of such colour polymorphism, which is widespread in several insect orders. [source] Holly leaf-miners on two continents: what makes an outbreak species?ECOLOGICAL ENTOMOLOGY, Issue 2 2001Sabine Eber Summary 1. Some herbivore species periodically undergo damaging, high-density outbreak phases followed by less damaging low-density phases. Others maintain steady, low to moderate density levels that do little damage to their hosts. 2. Two closely related holly leaf-miner species were compared that share many ecological traits and have very similar life cycles, but only one of which exhibits outbreaks. Phytomyza ilicicola in the eastern U.S.A. varied widely in mortality and infestation levels, reaching local densities of over 10 mines per leaf. In contrast, Phytomyza ilicis in the U.K. showed low infestation and high mortality at all sites. Using data from the literature and from field studies, the factors responsible for these contrasting dynamics were sought. 3. Phytomyza ilicicola oviposits into the leaf lamina, and experiences weak larval competition only at high densities. Phytomyza ilicis oviposits into the leaf midrib, which leads to high mortality of young larvae before mine formation. Multiply mined leaves were therefore very common in P. ilicicola but rare in P. ilicis. 4. Differences in the parasitoid complexes of the two systems accounted for further differences in survival to adulthood. The main (larval) parasitoid, which was found to impose high, density-dependent mortality on P. ilicis, is missing on P. ilicicola. It is replaced by an egg,pupal parasitoid, which varies in its impact at differe,t sites. Multiple emergence of adults from multiply mined leaves is therefore widespread in P. ilicicola but does not occur in P. ilicis. 5. The differences in oviposition behaviour and in the parasitoid complexes are likely to allow P. ilicicola to outbreak when habitat conditions are favourable, while P. ilicis is always tightly regulated. [source] Modelling the hydraulic preferences of benthic macroinvertebrates in small European streamsFRESHWATER BIOLOGY, Issue 1 2007SYLVAIN DOLÉDEC Summary 1. Relating processes occurring at a local scale to the natural variability of ecosystems at a larger scale requires the design of predictive models both to orientate stream management and to predict the effects of larger scale disturbances such as climate changes. Our study contributes to this effort by providing detailed models of the hydraulic preferences of 151 invertebrate taxa, mostly identified at the species level. We used an extensive data set comprising 580 invertebrate samples collected using a Surber net from nine sites of second and third order streams during one, two or three surveys at each site. We used nested non-linear mixed models to relate taxon local densities to bed shear stresses estimated from FliesswasserStammTisch hemisphere numbers. 2. An average model by taxon, i.e. independent from surveys, globally explained 25% of the density variations of taxa within surveys. A quadratic relationship existed between the average preferences and the niche breadth of taxa, indicating that taxa preferring extreme hemisphere numbers had a reduced hydraulic niche breadth. A more complete model, where taxa preferences vary across surveys, globally explained 38% of the variation of taxa densities within surveys. Variations in preferences across surveys were weak for taxa preferring extreme hemisphere numbers. 3. There was a significant taxonomic effect on preferences computed from the complete model. By contrast, season, site, average hemisphere number within a survey and average density of taxa within a survey used as covariates did not consistently explain shifts in taxon hydraulic preferences across surveys. 4. The average hydraulic preferences of taxa obtained from the extensive data set were well correlated to those obtained from two additional independent data sets collected in other regions. The consistency of taxon preferences across regions supports the use of regional preference curves for estimating the impact of river management on invertebrate communities. By contrast, the hydraulic niche breadths of taxa computed from the different data sets were not related. [source] Guided Cell Migration on Microtextured Substrates with Variable Local Density and AnisotropyADVANCED FUNCTIONAL MATERIALS, Issue 10 2009Deok-Ho Kim Abstract This work reports the design of and experimentation with a topographically patterned cell culture substrate of variable local density and anisotropy as a facile and efficient platform to guide the organization and migration of cells in spatially desirable patterns. Using UV-assisted capillary force lithography, an optically transparent microstructured layer of a UV curable poly(urethane acrylate) resin is fabricated and employed as a cell-culture substrate after coating with fibronectin. With variable local pattern density and anisotropy present in a single cell-culture substrate, the differential polarization of cell morphology and movement in a single experiment is quantitatively characterized. It is found that cell shape and velocity are exquisitely sensitive to variation in the local anisotropy of the two-dimensional rectangular lattice arrays, with cell elongation and speed decreasing on symmetric lattice patterns. It is also found that cells could integrate orthogonal spatial cues when determining the direction of cell orientation and movement. Furthermore, cells preferentially migrate toward the topographically denser areas from sparser ones. Consistent with these results, it is demonstrated that systematic variation of local densities of rectangular lattice arrays enable a planar assembly of cells into a specified location. It is envisioned that lithographically defined substrates of variable local density and anisotropy not only provide a new route to tailoring the cell-material interface but could serve as a template for advanced tissue engineering. [source] Contrasting responses of arable spiders to the landscape matrix at different spatial scalesJOURNAL OF BIOGEOGRAPHY, Issue 1 2008Martin H. Schmidt Abstract Aim, Animal communities can be influenced by the composition of the surrounding landscape through immigration. Depending on habitat preferences, however, the effect of the landscape matrix can be positive or negative and can vary with scale. We tested this idea with arable spiders and tried to infer dispersal distances from relationships between local density and landscape composition at different spatial scales. Location, Thirty-eight landscapes around the cities of Göttingen and Giessen, Germany. Methods, Spiders were captured with pitfall traps in one field of winter wheat in each landscape. Landscape composition around the fields was characterized at 11 scales from 95 m to 3 km radius by land-use mapping and subsequent GIS analysis. Correlation tests were performed between landscape composition and local densities or species richness. Results, In both study regions, local species richness was enhanced by non-crop habitats on a landscape scale. The overall densities of wolf spiders (Lycosidae), long-jawed spiders (Tetragnathidae), crab spiders (Thomisidae), and dwarf sheet spiders (Hahniidae) increased significantly in landscapes with high percentages of non-crop habitats. Out of the 40 species tested, 19 responded positively to the percentage of non-crop habitats in the surrounding landscape, and five responded negatively. Depending on the species, the spatial scales with the highest explanatory power ranged from 95 m to 3 km radius around the study fields, potentially reflecting dispersal distances. Main conclusions, Arable spider species showed contrasting responses to the landscape context with respect both to the direction and to the spatial scale of the relationship. The variation in landscape requirements among species ensures high spider densities in a wide range of situations, which contributes to ecosystem resilience. However, species richness of arable spiders depends on heterogeneous landscapes with high percentages of non-crop habitats. [source] The distribution,abundance (density) relationship: its form and causes in a tropical mammal order, PrimatesJOURNAL OF BIOGEOGRAPHY, Issue 4 2005A. H. Harcourt Abstract Aim, Across a wide variety of organisms, taxa with high local densities (abundance) have large geographical ranges (distributions). We use primatology's detailed knowledge of its taxon to investigate the form and causes of the relationship in, unusually for macroecological analysis, a tropical taxon. Location, Africa, Central and South America, Asia, Madagascar. Methods, To investigate the form of the density,range relationship, we regressed local density on geographical range size, and also on female body mass, because in the Primates, density correlates strongly with mass. To investigate the biological causes of the relationship, we related (1) abundance (density × range size) and (2) residuals from the density,range regression lines to various measures of (i) resource use, (ii) reproductive rate and (iii) potential specialization. All data are from the literature. Analyses were done at the level of species (n = 140), genera (n = 60) and families/subfamilies (n = 17). We present various levels of results, including for all data, after omission of outlier data, after correction for phylogenetic dependence, and after Bonferroni correction of probabilities for multiple comparisons. Results, Regarding the form of the relationship, Madagascar primates are clear outliers (high densities in small ranges). Among the remaining three realms, the relation of density to range is weak or non-existent at the level of species and genera. However, it is strong, tight and linear at the level of families/subfamilies (r2 = 0.6, F1,10 = 19, P < 0.01). Although among primates, density is very significantly related to mass, at no taxonomic level is range size related to body mass. Consequently, removing the effects of mass makes little to no difference to density,range results. Regarding the biology of the relationship, only traits indicative of specialization are associated with abundance (meaning numbers): rare taxa are more specialized than are abundant taxa. The association is largely via range size, not density. Across families, no traits correlate significantly with the density,range relationship, nor with deviations from it, despite the strength of the relationship at this taxonomic level. Main conclusions, We suggest that in macroecology, analysis at taxonomic levels deeper than that of the relatively ephemeral species can be appropriate. We argue that the several purely methodological explanations for the positive density,range size relationship in primates can be rejected. Of the various biological hypotheses, those having to do with specialization,generalization seem the only applicable ones. The fact that the relationship is entirely via range size, not via density, means that while we might have a biology of range size, we do not yet have one of the density,geographical range relationship. It is probably time to search for multivariate explanations, rather than univariate ones. However, we can for the first time, for at least primates, suggest that any association of abundance or range size with specialization is via the number of different subtaxa, not the average degree of specialization of each subtaxon. The implication for conservation is obvious. [source] splatche: a program to simulate genetic diversity taking into account environmental heterogeneityMOLECULAR ECOLOGY RESOURCES, Issue 1 2004M. Currat Abstract We present a program called splatche (SPatiaL And Temporal Coalescences in Heterogeneous Environments) to simulate the molecular diversity of samples of genes in an environmentally heterogeneous world. Simulations are performed by, first, simulating the colonization of the world using environmental information to constrain migrations and local densities. These simulated densities and migration rates recorded over time and space are then used to simulate genetic diversity under a coalescent framework. The program thus virtually allows the translation of ecological information into molecular diversity, a novel approach that can be used to study the effect of climatic change on genetic diversity. [source] Metapopulation dynamics across gradients , the relation between colonization and extinction in shaping the range edgeOIKOS, Issue 10 2009Beáta Oborny We study the dynamics of a metapopulation in which the rates of colonization and/or extinction change along an environmental gradient. Spatially explicit simulations are applied to compare two cases: in parent-dependent colonization (PDC) the rate of colonization is limited by the production of new individuals; in offspring-dependent colonization (ODC) it is limited by the success of establishment of the offspring. Thus, PDC depends on the quality of the parent's site, while ODC is dependent on the offspring's site. We combine PDC and ODC in a spatially implicit model. We study the steady-state distribution of a metapopulation, and ask whether the local densities of occupied sites at each position x along the gradient could be predicted from the local rates of colonization c(x) and extinction e(x). This prediction is not trivial, since the sites are connected, enabling a flow of individuals from more favorable to less favorable sites. The results show that at ODC a single parameter, c(x)/e(x), is sufficient for the prediction. Therefore, different species and geographic regions can be directly compared by appropriate rescaling: choosing the local average lifetime of occupancy, 1/e(x), for a time unit at each point along the gradient. This permits generalizations about the shape of range edges, and can help to predict the position of the boundary of a species' distribution. At PDC, rescaling is not possible: the whole profile of c(x) and e(x) along the gradient has to be taken into consideration. Nevertheless, rescaling gives a good approximation when the parent-dependent component of colonization does not change abruptly across space. [source] Population dynamics of an endangered heathland shrub, Epacris stuartii (Epacridaceae): Recruitment, establishment and survivalAUSTRAL ECOLOGY, Issue 1 2002David A. Keith Abstract The only known population of the endangered shrub Epacris stuartii Stapf was studied from 1994 to 2001 using demographic census techniques. The effects of substrate, a fire and a storm on the emergence and survival of seedlings and the survival of established plants of different sizes were examined using failure-time analyses and logit-linear models. Ninety-five per cent of seedling emergence was delayed until the second post-fire spring, an unusual response among species with persistent soil seed banks. Mortality of seedlings was extreme compared with larger-seeded species, but diminished significantly with age. Seedling mortality varied significantly between substrates: 40% of seedlings persisted for more than 5 years in mineral soil, whereas less than 10% lived more than a year on rock and intermediate substrates. However, seedling numbers and local densities were lower on soils than other substrates. Background mortality of established plants was lower on soil and intermediate substrates (0.5% per year) than on rock (3% per year). Small plants may be more susceptible than large plants on rock, but not on soil. Both the fire and the storm resulted in elevated mortality of established plants. The population exhibited a variable response to fire, with plants on rock and intermediate substrates behaving as obligate seeders, whereas plants in soil resprouted. This appears to be the first report of microhabitat variation in fire response at sympatric scales. The effects of the storm were apparently independent of substrate and plant size. The essentially independent disturbance regimes comprising recurring fires and storms are likely to have a profound effect on the long-term population dynamics of E. stuartii. Over the 7-year census period, recruitment has failed to compensate for mortality, resulting in a 30% net decline in the population. The demographic census has proved to be crucial in the detection and diagnosis of this decline. [source] Seasonal spatial dynamics and causes of nest movement in colonies of the invasive Argentine ant (Linepithema humile)ECOLOGICAL ENTOMOLOGY, Issue 5 2006NICOLE E. HELLER Abstract 1.,Colony organisation and movement behaviour of the Argentine ant (Linepithema humile) was studied over 3 years in field populations in California and in captive colonies in the laboratory. This invasive species is highly polydomous and unicolonial; colonies consist of expansive and fluid networks of nests and trails. The spatial and temporal organisation of colonies may contribute to ecological dominance. 2.,Argentine ant nests and inter-nest trails shift in size, abundance, and location, so that colony networks are spatially contracted in the winter and expanded spring to autumn. Colonies occupy permanent sites; ants migrated to and from the same winter nest locations year after year, and occupied 30% of the same nests repeatedly during seasonal migrations. 3.,Nests were moved on average 2,3 m. Forty-two per cent were occupied less than 1 month, 4% the entire study, and the other 54% lasted 3.9 ± 2.3 months (mean ± SD). 4.,Nests were located within 2,4 m of woody plants, in warm sites in the winter and cool sites in the summer. Both humidity and food availability influenced nest-site choice in laboratory colonies. However, when faced with a trade-off between factors, the ants chose humid nest boxes over nest boxes near food, and ants moved nests only in response to changes in humidity and not distance to food. 5.,The results indicate that L. humile colonies are seasonally polydomous, and that nest movements are driven by changes in microclimate. Colony organisation maintains high local density and increases food supply, which may improve the competitive ability of L. humile colonies and reduce opportunities for species coexistence. [source] Effect of stinging nettle habitats on aphidophagous predators and parasitoids in wheat and green pea fields with special attention to the invader Harmonia axyridis Pallas (Coleoptera: Coccinellidae)ENTOMOLOGICAL SCIENCE, Issue 4 2009Ammar ALHMEDI Abstract The relative occurrence and seasonal abundance of aphids and their natural enemies were visually assessed between May and July 2005,2006 in four types of habitats located in Gembloux (Namur province, Belgium): green pea, wheat and stinging nettle either planted in or naturally growing in woodland adjacent to these crops. Results showed that: (i) Acyrthosiphon pisum Harris, Sitobion avenae F. and Microlophium carnosum Buckton were the most common aphid species, respectively, on green pea, wheat and stinging nettle either in or near field crops; (ii) stinging nettle and field crops shared several important aphidophagous insect species such as the ladybird Coccinella septempunctata L., hoverfly Episyrphus balteatus De Geer and braconid wasp Aphidius ervi Haliday; (iii) the shared beneficial species were typically recorded earlier on stinging nettles than on crops; and (iv) the spatial occurrence of the invasive ladybird Harmonia axyridis Pallas was distinctly associated with stinging nettles, particularly in 2005. Stinging nettles and field crops partially coincide in time, enabling the movement of natural enemies among them. These findings suggest that the presence of stinging nettles in landscapes seems to enhance the local density of aphidophagous insect communities necessary for aphid biocontrol in field crops. [source] Cell Migration: Guided Cell Migration on Microtextured Substrates with Variable Local Density and Anisotropy (Adv. Funct.ADVANCED FUNCTIONAL MATERIALS, Issue 10 2009Mater. A novel microtextured cell substrate with variable local density and anisotropy as a platform for guided cell migration is presented by A. Levchenko, K.-Y. Suh, et al. on page 1579. A simple, scalable, and cost-effective technique, capillary force lithography, is used to fabricate precise microtopographic features on an optically transparent glass coverslip. Live cell motility is found to be extremely sensitive to variation in the local density and anisotropy of rectangular lattices, with cell elongation and speed decreasing on a symmetric lattice. Cells integrate orthogonal contact guidance cues when determining the direction of their orientation and movement. [source] Guided Cell Migration on Microtextured Substrates with Variable Local Density and AnisotropyADVANCED FUNCTIONAL MATERIALS, Issue 10 2009Deok-Ho Kim Abstract This work reports the design of and experimentation with a topographically patterned cell culture substrate of variable local density and anisotropy as a facile and efficient platform to guide the organization and migration of cells in spatially desirable patterns. Using UV-assisted capillary force lithography, an optically transparent microstructured layer of a UV curable poly(urethane acrylate) resin is fabricated and employed as a cell-culture substrate after coating with fibronectin. With variable local pattern density and anisotropy present in a single cell-culture substrate, the differential polarization of cell morphology and movement in a single experiment is quantitatively characterized. It is found that cell shape and velocity are exquisitely sensitive to variation in the local anisotropy of the two-dimensional rectangular lattice arrays, with cell elongation and speed decreasing on symmetric lattice patterns. It is also found that cells could integrate orthogonal spatial cues when determining the direction of cell orientation and movement. Furthermore, cells preferentially migrate toward the topographically denser areas from sparser ones. Consistent with these results, it is demonstrated that systematic variation of local densities of rectangular lattice arrays enable a planar assembly of cells into a specified location. It is envisioned that lithographically defined substrates of variable local density and anisotropy not only provide a new route to tailoring the cell-material interface but could serve as a template for advanced tissue engineering. [source] Monitoring the Channel Formation in Organic Field-Effect Transistors via Photoinduced Charge TransferADVANCED FUNCTIONAL MATERIALS, Issue 5 2009Thokchom Birendra Singh Abstract Conducting channel formation in organic field-effect transistors (OFETs) is considered to happen in the organic semiconductor layer very close to the interface with the gate dielectric. In the gradual channel approximation, the local density of accumulated charge carriers varies as a result of applied gate bias, with the majority of the charge carriers being localized in the first few semiconductor monolayers close to the dielectric interface. In this report, a new concept is employed which enables the accumulation of charge carriers in the channel by photoinduced charge transfer. An OFET employing C60 as a semiconductor and divinyltetramethyldisiloxane-bis(benzocyclobutene) as the gate dielectric is modified by a very thin noncontinuous layer of zinc-phthalocyanine (ZnPc) at the semiconductor/dielectric interface. With this device geometry, it is possible to excite the phthalocyanine selectively and photogenerate charges directly at the semiconductor/dielectric interface via photoinduced electron transfer from ZnPc onto C60. Thus the formation of a gate induced and a photoinduced channel in the same device can be correlated. [source] Entropy-based metrics in swarm clusteringINTERNATIONAL JOURNAL OF INTELLIGENT SYSTEMS, Issue 9 2009Bo Liu Ant-based clustering methods have received significant attention as robust methods for clustering. Most ant-based algorithms use local density as a metric for determining the ants' propensities to pick up or deposit a data item; however, a number of authors in classical clustering methods have pointed out the advantages of entropy-based metrics for clustering. We introduced an entropy metric into an ant-based clustering algorithm and compared it with other closely related algorithms using local density. The results strongly support the value of entropy metrics, obtaining faster and more accurate results. Entropy governs the pickup and drop behaviors, while movement is guided by the density gradient. Entropy measures also require fewer training parameters than density-based clustering. The remaining parameters are subjected to robustness studies, and a detailed analysis is performed. In the second phase of the study, we further investigated Ramos and Abraham's (In: Proc 2003 IEEE Congr Evol Comput, Hoboken, NJ: IEEE Press; 2003. pp 1370,1375) contention that ant-based methods are particularly suited to incremental clustering. Contrary to expectations, we did not find substantial differences between the efficiencies of incremental and nonincremental approaches to data clustering. © 2009 Wiley Periodicals, Inc. [source] Relational mountain (density) clustering method and web log analysisINTERNATIONAL JOURNAL OF INTELLIGENT SYSTEMS, Issue 3 2005Kuhu Pal The mountain clustering method and the subtractive clustering method are useful methods for finding cluster centers based on local density in object data. These methods have been extended to shell clustering. In this article, we propose a relational mountain clustering method (RMCM), which produces a set of (proto) typical objects as well as a crisp partition of the objects generating the relation, using a new concept that we call relational density. We exemplify RMCM by clustering several relational data sets that come from object data. Finally, RMCM is applied to web log analysis, where it produces useful user profiles from web log data. © 2005 Wiley Periodicals, Inc. Int J Int Syst 20: 375,392, 2005. [source] Lizard community structure along environmental gradientsJOURNAL OF ANIMAL ECOLOGY, Issue 2 2010Lauren B. Buckley Summary 1. ,How the total number of individuals in a community is divided among its species is governed by both the distribution of species along landscape-scale environmental gradients and by local resource partitioning. In vertebrate ectotherms, abiotic environmental conditions may constrain geographic distributions more strongly than local population densities due to thermal constraints on resource acquisition and due to behavioural thermoregulation. 2. ,We investigate whether local density and species richness are decoupled for lizard communities within the Southwest US by comparing 18 species-abundance distributions. 3. ,While species richness decreases strongly with decreasing temperature, there is no significant relationship between temperature or resource availability (net primary productivity) and the total number of individuals within a community. Consequently, in more species-rich communities species have lower mean abundances. 4. ,This suggestion that lizard species richness is not a function of an area's capacity to support more individuals questions for this group species diversity theories based on this assumption. [source] Density dependence in a recovering osprey population: demographic and behavioural processesJOURNAL OF ANIMAL ECOLOGY, Issue 5 2008V. Bretagnolle Summary 1Understanding how density-dependent and independent processes influence demographic parameters, and hence regulate population size, is fundamental within population ecology. We investigated density dependence in growth rate and fecundity in a recovering population of a semicolonial raptor, the osprey Pandion haliaetus [Linnaeus, 1758], using 31 years of count and demographic data in Corsica. 2The study population increased from three pairs in 1974 to an average of 22 pairs in the late 1990s, with two distinct phases during the recovery (increase followed by stability) and contrasted trends in breeding parameters in each phase. 3We show density dependence in population growth rate in the second phase, indicating that the stabilized population was regulated. We also show density dependence in productivity (fledging success between years and hatching success within years). 4Using long-term data on behavioural interactions at nest sites, and on diet and fish provisioning rate, we evaluated two possible mechanisms of density dependence in productivity, food depletion and behavioural interference. 5As density increased, both provisioning rate and the size of prey increased, contrary to predictions of a food-depletion mechanism. In the time series, a reduction in fledging success coincided with an increase in the number of non-breeders. Hatching success decreased with increasing local density and frequency of interactions with conspecifics, suggesting that behavioural interference was influencing hatching success. 6Our study shows that, taking into account the role of non-breeders, in particular in species or populations where there are many floaters and where competition for nest sites is intense, can improve our understanding of density-dependent processes and help conservation actions. [source] The role of group size and environmental factors on survival in a cooperatively breeding tropical passerineJOURNAL OF ANIMAL ECOLOGY, Issue 6 2006LYANNE BROUWER Summary 1Variation in survival, a major determinant of fitness, may be caused by individual or environmental characteristics. Furthermore, interactions between individuals may influence survival through the negative feedback effects of density dependence. Compared to species in temperate regions, we have little knowledge about population processes and variation in fitness in tropical bird species. 2To investigate whether variation in survival could be explained by population size or climatic variables we used capture,recapture models in conjunction with a long-term data set from an island population of the territorial, cooperatively breeding Seychelles warbler (Acrocephalus sechellensis). The lack of migration out of the study population means that our results are not confounded by dispersal. 3Annual survival was high, both for adults (84%) and juveniles (61%), and did not differ between the sexes. Although there was significant variation in survival between years, this variation could not be explained by overall population size or weather variables. 4For territorial species, resource competition will work mainly on a local scale. The size of a territory and number of individuals living in it will therefore be a more appropriate measure of density than overall population density. Consequently, both an index of territory quality per individual (food availability) and local density, measured as group size, were included as individual covariates in our analyses. 5Local density had a negative effect on survival; birds living in larger groups had lower survival probabilities than those living in small groups. Food availability did not affect survival. 6Our study shows that, in a territorial species, although density-dependent effects might not be detectable at the population level they can be detected at the individual territory level , the scale at which individuals compete. These results will help to provide a better understanding of the small-scale processes involved in the dynamics of a population in general, but in particular in tropical species living in relatively stable environments. [source] Spatial dynamics of predation by carabid beetles on slugsJOURNAL OF ANIMAL ECOLOGY, Issue 3 2000David A. Bohan Summary 1.,An explicitly spatial sampling approach was employed to test the null hypothesis that the predation on slugs by the carabid beetle Pterostichus melanarius (Illiger) was opportunistic. 2.,The beetles and slugs were sampled across a nested series of grids of sampling points, in a field of winter wheat during June and July 1997. 3.,The spatial distribution of all slugs in June was found to change with the scale of the sampling grid, from random on the 0.25 m scale, through aggregation at 1 m, to random at 4 m. At the highest scale of 16 m, the slugs were significantly spatially aggregated. 4.,The distribution of beetles in June was also spatially dynamic, with randomness observed at the 4 m and 8 m scales. At 16 m, significant aggregation was observed. 5.,The dynamic distributions of slugs and beetles, at 16 m, were found not to be associated with, and thus were not determined by, soil or crop factors. 6.,Comparison of slug and beetle populations showed, however, that the distributions at 16 m were dynamically associated with each other. In June where there were many slugs there were also many carabids, whilst in July where there were many carabids there were few slugs. 7.,Approximately 11% of the beetles sampled across the 16 m grid in June and July were found to have ingested slug protein, following intensive enzyme-linked immunosorbent assay (ELISA) testing. 8.,The spatial distribution of these slug-positive beetles was significantly associated with the distribution of the larger slug classes, over 25 mg. Where there were many large slugs in June there were many slug-positive beetles. Conversely, in July few large slugs were found where there were many slug-positive beetles. 9.,Parametric analysis revealed that these changes in the large slug class, at each sampling point between June and July (growth), were negatively related to the local numbers of slug-positive beetles, and that growth declined as the local numbers of beetles increased. 10.,These findings suggest that predation was not opportunistic, but direct and dynamic, falsifying the null hypothesis. Moreover, this predation elicited significant changes in the spatial distribution and local density of the slugs, in a manner that may be termed spatially density dependent. [source] Contrasting responses of arable spiders to the landscape matrix at different spatial scalesJOURNAL OF BIOGEOGRAPHY, Issue 1 2008Martin H. Schmidt Abstract Aim, Animal communities can be influenced by the composition of the surrounding landscape through immigration. Depending on habitat preferences, however, the effect of the landscape matrix can be positive or negative and can vary with scale. We tested this idea with arable spiders and tried to infer dispersal distances from relationships between local density and landscape composition at different spatial scales. Location, Thirty-eight landscapes around the cities of Göttingen and Giessen, Germany. Methods, Spiders were captured with pitfall traps in one field of winter wheat in each landscape. Landscape composition around the fields was characterized at 11 scales from 95 m to 3 km radius by land-use mapping and subsequent GIS analysis. Correlation tests were performed between landscape composition and local densities or species richness. Results, In both study regions, local species richness was enhanced by non-crop habitats on a landscape scale. The overall densities of wolf spiders (Lycosidae), long-jawed spiders (Tetragnathidae), crab spiders (Thomisidae), and dwarf sheet spiders (Hahniidae) increased significantly in landscapes with high percentages of non-crop habitats. Out of the 40 species tested, 19 responded positively to the percentage of non-crop habitats in the surrounding landscape, and five responded negatively. Depending on the species, the spatial scales with the highest explanatory power ranged from 95 m to 3 km radius around the study fields, potentially reflecting dispersal distances. Main conclusions, Arable spider species showed contrasting responses to the landscape context with respect both to the direction and to the spatial scale of the relationship. The variation in landscape requirements among species ensures high spider densities in a wide range of situations, which contributes to ecosystem resilience. However, species richness of arable spiders depends on heterogeneous landscapes with high percentages of non-crop habitats. [source] The distribution,abundance (density) relationship: its form and causes in a tropical mammal order, PrimatesJOURNAL OF BIOGEOGRAPHY, Issue 4 2005A. H. Harcourt Abstract Aim, Across a wide variety of organisms, taxa with high local densities (abundance) have large geographical ranges (distributions). We use primatology's detailed knowledge of its taxon to investigate the form and causes of the relationship in, unusually for macroecological analysis, a tropical taxon. Location, Africa, Central and South America, Asia, Madagascar. Methods, To investigate the form of the density,range relationship, we regressed local density on geographical range size, and also on female body mass, because in the Primates, density correlates strongly with mass. To investigate the biological causes of the relationship, we related (1) abundance (density × range size) and (2) residuals from the density,range regression lines to various measures of (i) resource use, (ii) reproductive rate and (iii) potential specialization. All data are from the literature. Analyses were done at the level of species (n = 140), genera (n = 60) and families/subfamilies (n = 17). We present various levels of results, including for all data, after omission of outlier data, after correction for phylogenetic dependence, and after Bonferroni correction of probabilities for multiple comparisons. Results, Regarding the form of the relationship, Madagascar primates are clear outliers (high densities in small ranges). Among the remaining three realms, the relation of density to range is weak or non-existent at the level of species and genera. However, it is strong, tight and linear at the level of families/subfamilies (r2 = 0.6, F1,10 = 19, P < 0.01). Although among primates, density is very significantly related to mass, at no taxonomic level is range size related to body mass. Consequently, removing the effects of mass makes little to no difference to density,range results. Regarding the biology of the relationship, only traits indicative of specialization are associated with abundance (meaning numbers): rare taxa are more specialized than are abundant taxa. The association is largely via range size, not density. Across families, no traits correlate significantly with the density,range relationship, nor with deviations from it, despite the strength of the relationship at this taxonomic level. Main conclusions, We suggest that in macroecology, analysis at taxonomic levels deeper than that of the relatively ephemeral species can be appropriate. We argue that the several purely methodological explanations for the positive density,range size relationship in primates can be rejected. Of the various biological hypotheses, those having to do with specialization,generalization seem the only applicable ones. The fact that the relationship is entirely via range size, not via density, means that while we might have a biology of range size, we do not yet have one of the density,geographical range relationship. It is probably time to search for multivariate explanations, rather than univariate ones. However, we can for the first time, for at least primates, suggest that any association of abundance or range size with specialization is via the number of different subtaxa, not the average degree of specialization of each subtaxon. The implication for conservation is obvious. [source] Rarity, specialization and extinction in primatesJOURNAL OF BIOGEOGRAPHY, Issue 4 2002A. H. Harcourt Aim To determine and explain biological traits that distinguish rare from common primate taxa. Location Africa, Americas, Asia, Madagascar. Methods We compare the biology of rare primate taxa with the biology of common taxa. Rarity is defined by (1) small size of geographic range; (2) small geographic range plus low local population density; and (3) small geographic range plus low local density plus narrow habitat specificity. After a linear comparison of size of geographic range with various biological traits, globally and by realm, extremes of rarity and commonness per realm are identified, and then combined for a global analysis. Tests are done both with genera treated as independent data points (n=62), and also with phylogenetic control by use of an independent contrasts test. Extinction risk in vertebrates, including primates, often correlates with high resource requirements, slow population recovery rate, and specialization. The three indices of rarity are therefore compared with these three general traits. Measures of resource use are body mass, local density, annual range size, and group size; of recovery rate, interbirth interval, and maximum intrinsic rate of natural population increase; and of degree of specialization, variety of diet, of habitats, maximum latitude, and morphological variety. All data come from the literature. Because several measures are compared, probabilities are Bonferroni corrected. Results If rarity in primates correlates with any biological attribute, it consistently correlates with only measures of specialization, and not with measures of high resource use, or slow population recovery rate. Without phylogenetic correction, the first two indices of rarity associate significantly with all four measures of specialization, and the third with maximum latitude. With phylogenetic correction, the first index still associates with all four, the second with two (maximum latitude, number of species per genus), and the third shows no significant associations. While the four measures of specialization are strongly interrelated, stepwise regressions on geographic range indicate that maximum latitude has the strongest effect, followed by dietary variety and number of species per genus and, finally, habitat variety. Main conclusions The most commonly demonstrated traits of susceptibility to extinction are those of high resource use, slow recovery rate, and specialization. Yet, while rarity (almost however, it is defined) is an inevitable precursor to extinction, specialization is the only trait found to correlate with rarity in this study. We cannot explain this apparent contradiction. [source] Application of standard DFT theory for nonbonded interactions in soft matter: Prototype study of poly- para -phenyleneJOURNAL OF COMPUTATIONAL CHEMISTRY, Issue 2 2006Marcelo Alves-Santos Abstract We present a detailed analysis of the application of density functional theory (DFT) methods to the study of structural properties of molecular and supramolecular systems, using as a paradigmatic example three para -phenylene-based systems: isolated biphenyl, single chain poly- para -phenylene, and crystalline biphenyl. We use different functionals for the exchange correlation potential, the local density (LDA), and generalized gradient approximations (GGA), and also different basis sets expansions, localized, plane waves (PW), and mixed (localized plus PW), within the reciprocal space formulation for the hamiltonian. We find that regardless of the choice of basis functions, the GGA calculations yield larger interring distances and torsion angles than LDA. For the same XC approximation, the agreement between calculations with different basis functions lies within 1% (LDA) or 0.5% (GGA) for distances, and while PW and mixed basis calculations agree within 1° for torsion angles, the localized basis results show larger angles by , 8° and a nonmonotonic dependence on basis size, with differences within 6°. The most prominent features, namely the torsion between rings for isolated molecule and infinite chain, and planarity for the molecule in crystalline environment, are well reproduced by all DFT calculations. © 2005 Wiley Periodicals, Inc. J Comput Chem 27: 217,227, 2006 [source] Ab Initio Calculations of Pristine and Doped Zirconia ,5 (310)/[001] Tilt Grain BoundariesJOURNAL OF THE AMERICAN CERAMIC SOCIETY, Issue 6 2002Zugang Mao The structure of the cubic-ZrO2 symmetrical tilt ,5 (310)/[001] grain boundary is examined using density functional theory within the local density and pseudopotential approximations. Several pristine stoichiometric grain-boundary structures are investigated and compared with Z-contrast scanning transmission electron microscopy and electron energy loss spectroscopy results. The lowest-energy grain-boundary structure is found to agree well with the experimental data. When Y3+ is substituted for Zr4+ at various sites in the lowest-energy grain-boundary structure, the calculations indicate that Y3+ segregation to the grain boundary is energetically preferred to bulk doping, in agreement with experimental results. [source] Calculation of XANES/ELNES Spectra of All Edges in Si3N4 and Si2N2OJOURNAL OF THE AMERICAN CERAMIC SOCIETY, Issue 1 2002Wai-Yim Ching Using a recently developed first-principles supercell method that includes the electron and core-hole interaction, the XANES/ELNES spectra of Si- L2,3, Si- K, and N- K edges in ,-Si3N4, ,-Si3N4, spinel c -Si3N4, and Si2N2O were calculated and compared. The difference in total energies between the initial ground state and the final core-hole state provides the transition energy. The calculated spectra are found to be in good agreement with the experimental measurements on ,-Si3N4 and c -Si3N4. The differences in the XANES/ELNES spectra for the same element in different crystals are explained in terms of differences in local bonding. The use of orbital-decomposed local density of states to explain the measured spectra is shown to be inadequate. These results reaffirm the importance of including the core-hole effect in any XANES/ELNES spectral calculation. [source] | |||||||||||||||||||||||||||||||