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Interaction Forces (interaction + force)
Selected AbstractsMeasuring the Interaction Forces between Protein Inclusion Bodies and an Air Bubble Using an Atomic Force MicroscopeBIOTECHNOLOGY PROGRESS, Issue 5 2001N. D. Wangsa-Wirawan Interaction forces between protein inclusion bodies and an air bubble have been quantified using an atomic force microscope (AFM). The inclusion bodies were attached to the AFM tip by covalent bonds. Interaction forces measured in various buffer concentrations varied from 9.7 nN to 25.3 nN (± 4,11%) depending on pH. Hydrophobic forces provide a stronger contribution to overall interaction force than electrostatic double layer forces. It also appears that the ionic strength affects the interaction force in a complex way that cannot be directly predicted by DLVO theory. The effects of pH are significantly stronger for the inclusion body compared to the air bubble. This study provides fundamental information that will subsequently facilitate the rational design of flotation recovery system for inclusion bodies. It has also demonstrated the potential of AFM to facilitate the design of such processes from a practical viewpoint. [source] The lines-of-force landscape of interactions between molecules in crystals; cohesive versus tolerant and `collateral damage' contactACTA CRYSTALLOGRAPHICA SECTION B, Issue 3 2010Angelo Gavezzotti A quantitative analysis of relative stabilities in organic crystal structures is possible by means of reliable calculations of interaction energies between pairs of molecules. Such calculations have been performed by the PIXEL method for 1108 non-ionic and 98 ionic organic crystals, yielding total energies and separate Coulombic polarization and dispersive contributions. A classification of molecule,molecule interactions emerges based on pair energy and its first derivative, the interaction force, which is estimated here explicitly along an approximate stretching path. When molecular separation is not at the minimum-energy value, as frequently happens, forces may be attractive or repulsive. This information provides a fine structural fingerprint and may be relevant to the mechanical properties of materials. The calculations show that the first coordination shell includes destabilizing contacts in ,,9% of crystal structures for compounds with highly polar chemical groups (e.g. CN, NO2, SO2). Calculations also show many pair contacts with weakly stabilizing (neutral) energies; such fine modulation is presumably what makes crystal structure prediction so difficult. Ionic organic salts or zwitterions, including small peptides, show a Madelung-mode pairing of opposite ions where the total lattice energy is stabilized from sums of strongly repulsive and strongly attractive interactions. No obvious relationships between atom,atom distances and interaction energies emerge, so analyses of crystal packing in terms of geometrical parameters alone should be conducted with due care. [source] AN AFM PROBE CONTROLLER DESIGN BASED ON ,-SYNTHESISASIAN JOURNAL OF CONTROL, Issue 1 2005Kuo-Jung Lan ABSTRACT The atomic force microscope (AFM) is one of the most important tools for measuring atomic resolution. The AFM system maintains constant force between a tip and the sample in order to track the sample topography. The controller that maintains the constant interaction force plays a significant role in measurement accuracy. This paper presents a ,-synthesis controller design to deal with model uncertainty and establish a measurement error bound. The system's nonlinearity and the set-point drift are lumped into a multiplicative uncertainty. The performance bound allows specification of the error magnitude over the frequency range. Simulation results show that the proposed control can tolerate uncertainties. The error spectrum from the experiments shows consistency with the design specifications. Images were taken to compare ,-synthesis control with a well-tuned PID control at a 480,m/s scan rate. The results verify the outstanding performance of the ,-controller. [source] Measuring the Interaction Forces between Protein Inclusion Bodies and an Air Bubble Using an Atomic Force MicroscopeBIOTECHNOLOGY PROGRESS, Issue 5 2001N. D. Wangsa-Wirawan Interaction forces between protein inclusion bodies and an air bubble have been quantified using an atomic force microscope (AFM). The inclusion bodies were attached to the AFM tip by covalent bonds. Interaction forces measured in various buffer concentrations varied from 9.7 nN to 25.3 nN (± 4,11%) depending on pH. Hydrophobic forces provide a stronger contribution to overall interaction force than electrostatic double layer forces. It also appears that the ionic strength affects the interaction force in a complex way that cannot be directly predicted by DLVO theory. The effects of pH are significantly stronger for the inclusion body compared to the air bubble. This study provides fundamental information that will subsequently facilitate the rational design of flotation recovery system for inclusion bodies. It has also demonstrated the potential of AFM to facilitate the design of such processes from a practical viewpoint. [source] Overview of Multiphase Flow Phenomena in Moving Time-Averaged SpaceCHEMICAL ENGINEERING & TECHNOLOGY (CET), Issue 9 2006K. Ueyama Abstract An overview of multiphase flow phenomena is described on the basis of three relations; a relation between an interaction force and time-averaged physical quantities, a relation between an interaction force and the surrounding flow field, and a relation between time-averaged physical quantities and multiphase flow. The three relations used to theoretically derive the parabolic radial distribution of gas holdup for recirculating turbulent flow in a bubble column are in good agreement with experimental data. General applicability of the three relations for a variety of multiphase flows is also discussed. [source] Cathodic Stripping Voltammetry of Uracil.ELECTROANALYSIS, Issue 1 2009Experimental, Theoretical Study Under Conditions of Square-Wave Voltammetry Abstract The electrode mechanism of uracil at a hanging mercury drop electrode (HMDE) is studied under cathodic stripping square-wave voltammetric mode owing to the cathodic dissolution of a sparingly soluble compound formed between the electrode material and uracil. The experimental results can be partly explained in the light of the recent theory for cathodic stripping processes of insoluble salts under conditions of square-wave voltammetry. It is established that the electrode reaction is complicated by attractive interactions between the deposited species of the insoluble compound. To elucidate the electrode mechanism completely a novel theoretical model is developed considering adsorption of the reacting analyte and lateral interactions between species of the insoluble compound. With the help of numerical simulations the effect of interactions is studied in detail, emphasizing the properties of the response that can be used as diagnostic criteria for recognition of the type of interaction forces. Theoretically predicted voltammetric properties agree well with the experimental results enabling clarification of the complex electrode mechanism of uracil at HMDE. [source] Microstructural deformation mechanisms of unsaturated granular soilsINTERNATIONAL JOURNAL FOR NUMERICAL AND ANALYTICAL METHODS IN GEOMECHANICS, Issue 5 2002J. A. Gili Abstract A discrete model for unsaturated granular soils has been developed. Three discrete entities have been defined: particles, water menisci and pores. Local interaction forces and water transfer mechanisms have been integrated into a model through the appropriate equilibrium and balance equations. The results of several numerical tests using this model have been described and discussed. Simulations include wetting and drying under load tests, the application of suction cycles and the effect of a deviatoric stress ratio on wetting-induced collapse. The model reacts just as true granular soil samples behave in laboratory tests. The model provides a new insight into the internal mechanisms leading to large-scale features of behaviour such as wetting-induced collapse or the increase in soil strength provided by suction. The paper also stresses that matric suction changes acting on a granular structure are capable of explaining most of the macroscopic features of stress,strain behaviour. Copyright © 2002 John Wiley & Sons, Ltd. [source] An efficient time-domain damping solvent extraction algorithm and its application to arch dam,foundation interaction analysisINTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING, Issue 9 2008Hong Zhong Abstract The dynamic structure,unbounded foundation interaction plays an important role in the seismic response of structures. The damping solvent extraction (DSE) method put forward by Wolf and Song has a great advantage of simplicity, with no singular integrals to be evaluated, no fundamental solution required and convolution integrals avoided. However, implementation of DSE in the time domain to large-scale engineering problems is associated with enormous difficulties in evaluating interaction forces on the structure,unbounded foundation interface, because the displacement on the corresponding interface is an unknown vector to be found. Three sets of interrelated large algebraic equations have to be solved simultaneously. To overcome these difficulties, an efficient algorithm is presented, such that the solution procedure can be greatly simplified and computational effort considerably saved. To verify its accuracy, two examples with analytical solutions were investigated, each with a parameter analysis on the domain size and amount of artificial damping. Then with the parameters suggested in the parameter study, the complex frequency,response functions and earthquake time history analysis of Morrow Point dam were presented to demonstrate the applicability and efficiency of DSE approach. Copyright © 2007 John Wiley & Sons, Ltd. [source] Accessing Time,Varying Forces on the Vibrating Tip of the Dynamic Atomic Force Microscope to Map Material CompositionISRAEL JOURNAL OF CHEMISTRY, Issue 2 2008Ozgur Sahin In dynamic atomic force microscopes the primary physical quantities being measured are the amplitude/phase or amplitude/frequency of the vibrating force probe. Topographic images with spatial resolutions down to the atomic scale can be obtained by mapping these measurements across the sample surface under feedback control. During the imaging process the vibrating tip is observing tip,sample interaction potentials (force,distance relationships) at every point on the surface. The interaction potential is a superposition of short- and long,distance interactions of various origins determined by the material compositions of the tip, sample, and the medium of imaging. In principle, measurement of tip,sample interaction potential should allow determination and mapping of material composition of the sample. However, a single measurement of amplitude/phase or amplitude/frequency in dynamic atomic force microscopes is not enough to characterize a complicated tip,sample interaction potential. Recent developments in the understanding of dynamics of the vibrating force probe (cantilever), together with specially designed cantilevers that utilize torsional vibrations in addition to conventional vertical vibrations, enable the recovery of tip,sample interaction potentials at a timescale less than a millisecond. Here, with theory and experiments, we discuss how these cantilevers recover the information about the tip,sample interaction forces and give an example of compositional mapping on a polymeric material system. [source] Understanding weathering of oil sands ores by atomic force microscopyAICHE JOURNAL, Issue 12 2009Sili Ren Abstract Effect of weathering on colloidal interactions between bitumen and oil sands solids was studied by atomic force microscopy (AFM). The change in bitumen chemistry due to weathering was found to have a negligible effect on the interactions of bitumen with solid particles. However, the increase in solid surface hydrophobicity due to ore weathering reversed the long-range interaction forces between bitumen and solids from repulsive to attractive with a corresponding increase in adhesion force. The measured force profiles between bitumen and various solids can be well fitted with the extended DLVO theory by considering an additional attractive force. The attractive long-range force and increased adhesion force make the separation of bitumen from solids more difficult and the attachment of fine solids on liberated bitumen easier, thereby leading to poor bitumen liberation and lower aeration efficiency. Such changes account for the observed poor processability of the weathered ores. © 2009 American Institute of Chemical Engineers AIChE J, 2009 [source] Probing the interaction forces between hydrophobic peptides and supported lipid bilayers using AFMJOURNAL OF MOLECULAR RECOGNITION, Issue 6 2007Guillaume Andre Abstract Despite the vast body of literature that has accumulated on tilted peptides in the past decade, direct information on the forces that drive their interaction with lipid membranes is lacking. Here, we attempted to use atomic force microscopy (AFM) to explore the interaction forces between the Simian immunodeficiency virus peptide and phase-separated supported bilayers composed of various lipids, i.e. dipalmitoylphosphatidylcholine, dioleoylphosphatidylcholine, dioleoylphosphatidic acid and dipalmitoylphosphatidylethanolamine. Histidine-tagged peptides were attached onto AFM tips terminated with nitrilotriacetate and tri(ethylene glycol) groups, an approach expected to ensure optimal exposure of the C-terminal hydrophobic domain. Force,distance curves recorded between peptide-tips and the different bilayer domains always showed a long-range repulsion upon approach and a lack of adhesion upon retraction, in marked contrast with the hydrophobic nature of the peptide. To explain this unexpected behaviour, we suggest a mechanism in which lipids are pulled out from the bilayer due to strong interactions with the peptide-tip, in agreement with the very low force needed to extract lipids from supported bilayers. Copyright © 2007 John Wiley & Sons, Ltd. [source] Probing DNA,peptide interaction forces at the single-molecule levelJOURNAL OF PEPTIDE SCIENCE, Issue 12 2006Norbert Sewald Abstract The versatility of chemical peptide synthesis combined with the high sensitivity of AFM single-molecule force spectroscopy allows us to investigate, quantify, and control molecular recognition processes (molecular nanotechnology), offering a tremendous potential in chemical biology. Single-molecule force spectroscopy experiments are able to detect fast intermediate transition states, details of the energy landscape, and structural changes, while avoiding multiple binding events that can occur under ensemble conditions. Dynamic force spectroscopy (DFS) is even able to provide data on the complex lifetime. This minireview outlines the biophysical methodology, discusses different experimental set-ups, and presents representative results in the form of two case studies, both dealing with DNA-binding peptides. They may serve as model systems, e.g., for transcription factors or gene transfection agents. Copyright © 2006 European Peptide Society and John Wiley & Sons, Ltd. [source] Atom force microscopic characterisation of the interaction forces between bovine serum albumin and cross-linked alkylated chitosan membranes in media of different pHPOLYMER INTERNATIONAL, Issue 12 2002Wen Guang Liu Abstract Butyl, octyl and hexadecyl moieties were introduced into chitosan. The adhesion of bovine serum albumin (BSA) onto glucose aldehyde-crosslinked alkylated chitosan membranes in pH media was investigated by probing the force-displacement curves with BSA-coated Atom force microscope (AFM) tips. The results indicated that, at the isoelectric point (IP), the sample membranes exhibited higher adhesion forces; and deviating from IP ie at pH 2, pH 6, the adhesion forces decreased. The adhesion forces at pH 2 are less than those at pH 6 due to the presence of electrostatic repulsive and attractive interactions, respectively. Measurements of the adhesion force confirmed quantitatively that the introduction of hydrophobic side-chains to chitosan can facilitate protein adsorption; however, longer flexible side-chains can depress protein adsorption to a certain degree. From an analyses of the adhesion forces, it is proposed that protein adsorption can be tuned by adjusting the lengths of the introduced side-alkyl moieties. © 2002 Society of Chemical Industry [source] A multiphase finite element simulation of biological conversion processes in landfillsPROCEEDINGS IN APPLIED MATHEMATICS & MECHANICS, Issue 1 2009Tim Ricken Worldwide, landfills are the most common way to dispose of waste, but have an impact on the environment as a result of harmful gas and leachate production. Estimating the long-term behaviour of a landfill in regard to this gas production and organic degrading, as well as to settlement and waste water production, is of high importance. Therefore, a model has been developed to simulate these processes. This constitutive model is based on the multiphase Theory of Porous Media. The body under investigation consists of an organic and an inorganic phase as well as a liquid and a gas phase. The equations of the model are developed on the basis of a consistent thermo-mechanical approach including the momentum balance for the solid phase and the mixture, the energy balance for the mixture and the mass balance for the gas phase. All interactions between the constituents such as mass transfers, interaction forces and energy fluxes are taken into consideration. The strongly coupled set of partial differential equations is implemented in the finite element code FEAP. The theoretical framework and the results of meantime successfully performed simulation of a real landfill body will be shown. (© 2009 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] ROBUST TWO-DEGREE-OF-FREEDOM CONTROL OF AN ATOMIC FORCE MICROSCOPEASIAN JOURNAL OF CONTROL, Issue 2 2004G. Schitter ABSTRACT The performance of an atomic force microscope (AFM) is improved substantially by utilizing modern model-based control methods in comparison to a standard proportional-integral (PI) controlled AFM system. We present the design and implementation of a two-degree-of-freedom (2DOF)-controller to accomplish topography measurements at high scan-rates with reduced measurement error. An H, -controller operates the AFM system in a closed loop while a model-based feedforward controller tracks the scanner to the last recorded scan-line. Experimental results compare the actual performance of the standard PI-controlled AFM and the 2DOF controlled system. The new controller reduces the control error considerably and enables imaging at higher speeds and at weaker tip-sample interaction forces. [source] | |||||||||||||