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Imaging Experiments (imaging + experiment)
Selected AbstractsA role for left temporal pole in the retrieval of words for unique entitiesHUMAN BRAIN MAPPING, Issue 4 2001Thomas J. Grabowski Abstract Both lesion and functional imaging studies have implicated sectors of high-order association cortices of the left temporal lobe in the retrieval of words for objects belonging to varied conceptual categories. In particular, the cortices located in the left temporal pole have been associated with naming unique persons from faces. Because this neuroanatomical-behavioral association might be related to either the specificity of the task (retrieving a name at unique level) or to the possible preferential processing of faces by anterior temporal cortices, we performed a PET imaging experiment to test the hypothesis that the effect is related to the specificity of the word retrieval task. Normal subjects were asked to name at unique level entities from two conceptual categories: famous landmarks and famous faces. In support of the hypothesis, naming entities in both categories was associated with increases in activity in the left temporal pole. No main effect of category (faces vs. landmarks/buildings) or interaction of task and category was found in the left temporal pole. Retrieving names for unique persons and for names for unique landmarks activate the same brain region. These findings are consistent with the notion that activity in the left temporal pole is linked to the level of specificity of word retrieval rather than the conceptual class to which the stimulus belongs. Hum. Brain Mapping 13:199,212, 2001. © 2001 Wiley-Liss, Inc. [source] Online motion correction for diffusion-weighted imaging using navigator echoes: Application to RARE imaging without sensitivity lossMAGNETIC RESONANCE IN MEDICINE, Issue 5 2001David G. Norris Abstract This article describes the first application of true online motion correction to diffusion-weighted RARE imaging. Two orthogonal navigator echoes were acquired and zeroth and first-order phase corrections applied in less than 8 ms between a diffusion-weighted magnetization preparation and data acquisition using the RARE sequence. The zeroth-order phase correction was realized by pulsing the system's B0 -coil: the first-order error corrected with appropriate magnetic field gradient pulses. Online correction ensured that no irreversible signal loss could occur in the imaging experiment. Diffusion-weighted images of the brain were obtained from healthy volunteers. EGG-triggered acquisition was applied at 400 ms after the R-wave. Data were acquired on a matrix of 256 × 256 with a RARE factor of 16 and a b -value of 804 smm,2. The images obtained with online motion correction showed a remarkably high image quality, while those acquired without motion correction were severely degraded by artifacts. Magn Reson Med 45:729,733, 2001. © 2001 Wiley-Liss, Inc. [source] The origins and present status of the radio wave controversy in NMRCONCEPTS IN MAGNETIC RESONANCE, Issue 4 2009D.I. Hoult Abstract The origins, history, and present status of the controversy surrounding a quantum description of the NMR signal as being due to radio waves are traced. With the Principle of Relativity and Coulomb's Law as formal starting points and the minimum of mathematics needed for understanding, the derivation of a classical electromagnetic theory of signal reception is first given. The agreement between that classical theory and a recent NMR experiment is then presented, leading to proof that, except for the highest field imaging experiments, there is no significant contribution of radio waves to the signal. Attention is drawn to the very different properties of the near and far energy, momenta, and fields inherent in the derivation. The role of the Correspondence Principle in formulating a quantum description is then emphasized and it is shown that the standard NMR interpretation of Dicke's theory of coherent spontaneous emission,that the latter is responsible for the NMR signal,cannot be correct. Finally, the author speculates on some of the intriguing relationships found in the classical electrodynamics of NMR signal reception and attempts to relate them to a common quantum electrodynamic precept of near field interaction: that the free induction decay voltage present at the terminals of an open-circuit receiving coil is based on an exchange of virtual photons between the nuclei in a sample and the free electrons in a receiving coil. © 2009 Crown in the right of Canada. Concepts Magn Reson Part A 34A: 193,216, 2009. [source] Fluorescence lifetime imaging of activatable target specific molecular probesCONTRAST MEDIA & MOLECULAR IMAGING, Issue 1 2010Raphael Alford Abstract In vivo optical imaging using fluorescently labeled self-quenched monoclonal antibodies, activated through binding and internalization within target cells, results in excellent target-to-background ratios. We hypothesized that these molecular probes could be utilized to accurately report on cellular internalization with fluorescence lifetime imaging (FLI). Two imaging probes were synthesized, consisting of the antibody trastuzumab (targeting HER2/neu) conjugated to Alexa Fluor750 in ratios of either 1:8 or 1:1. Fluorescence intensity and lifetime of each conjugate were initially determined at endosomal pHs. Since the 1:8 conjugate is self-quenched, the fluorescence lifetime of each probe was also determined after exposure to the known dequencher SDS. In vitro imaging experiments were performed using 3T3/HER2+ and BALB/3T3 (HER2,) cell lines. Changes in fluorescence lifetime correlated with temperature- and time-dependent cellular internalization. In vivo imaging studies in mice with dual flank tumors [3T3/HER2+ and BALB/3T3 (HER2,)] detected a minimal difference in FLI. In conclusion, fluorescence lifetime imaging monitors the internalization of target-specific activatable antibody,fluorophore conjugates in vitro. Challenges remain in adapting this methodology to in vivo imaging. Copyright © 2010 John Wiley & Sons, Ltd. [source] Evaluation of rHA labeled with Gd,DTPA for blood pool imaging and targeted contrast deliveryCONTRAST MEDIA & MOLECULAR IMAGING, Issue 1 2010Jim M. Wild Abstract A new contrast agent was developed by linking Gd,DTPA chelate to recombinant human albumin in the laboratory. The molar relaxivity of the new agent was tested in aqueous solution at B0 1.5,T and temperature 20°C. The soluble compound had a higher molar longitudinal relaxivity and molar transverse relaxivity in water (r1,=,7.2,s,1,mM,1, r2,=,18.4,s,1,mM,1) than those measured for Gd,DTPA solution (r1,=,3.5,s,1,mM,1, r2,=,5.5,s,1,mM,1). The performance of the compound as a blood pool agent was investigated with soluble and microparticulate forms of the compound and comparisons were made with Gd,DTPA and the polymeric blood-pool agent, Gadomer. T1 -weighted imaging experiments show that the soluble compound acts as a highly effective blood pool agent with hyperintensity in the vasculature persisting beyond 2,h post administration, compared with free Gd,DTPA, which was cleared from the blood pool after approximately 10,min. The clearance kinetics of the new agents were examined, due to the incomplete elimination within 14 days post injection; both rHA labeled compounds are probably not suitable for development as routine blood pool contrast media. However, with free sites on the Gd-loaded rHA molecule, there are possibilities for binding the agent to antibodies in the laboratory, which was demonstrated, and thus there exist potential applications for in vivo molecular imaging with this agent. Copyright © 2010 John Wiley & Sons, Ltd. [source] Event-related fMRI of Myoclonic Jerks Arising from Dysplastic CortexEPILEPSIA, Issue 9 2006John S. Archer Summary:,Background: Malformations of cortical development can cause epileptiform activity and myoclonic jerks, yet EEG correlates of jerks can be difficult to obtain. Methods: We studied a woman who had frequent episodes of persistent right-foot jerking since childhood. Ictal and interictal EEG had shown no localizing epileptiform activity. Functional imaging experiments were performed with concurrent video monitoring to document the timing of foot jerks. These studies mapped brain regions controlling voluntary right- and left-foot movements, and spontaneous right-foot jerks. Results: High-resolution structural MR imaging revealed a dysplastic gyrus extending anteriorly off the left central sulcus. Event-related analysis of spontaneous jerks revealed prominent activation of the left precentral gyrus (right-foot motor area), bilateral medial frontal regions (supplementary motor area), and the dysplastic gyrus. Hemodynamic response modeling to foot jerks revealed the hemodynamic response peaked earlier in the dysplastic cortex and SMA regions than in the foot area. Discussion: Event-related fMRI in a patient with spontaneous and induced epileptic foot jerks revealed brain regions active during jerks. The results of this analysis allowed us to tailor subsequent intracerebral recordings. Analysis of the timing of the hemodynamic response showed certain brain regions with an earlier rise in BOLD signal, suggesting a possible initiating role, or different hemodynamic response functions. Hemodynamic response timing should be considered carefully when interpreting event-related studies of epileptiform activity. [source] The volatility of the amygdala response to masked fearful eyesHUMAN BRAIN MAPPING, Issue 10 2010Thomas Straube Abstract Recently, it has been suggested that backwardly masked, and thus subliminally presented, fearful eyes are processed by the amygdala. Here, we investigated in four functional magnetic resonance imaging experiments whether the amygdala responds to subliminally presented fearful eyes per se or whether an interaction of masked eyes with the masks or with parts of the masks used for backward masking might be responsible for the amygdala activation. In these experiments, we varied the mask as well as the position of the target eyes. The results show that the amygdala does not respond to masked fearful eyes per se but to an interaction between masked fearful eyes and the eyes of neutral faces used for masking. This finding questions the hypothesis that the amygdala processes context-free parts of the human face without awareness. Hum Brain Mapp, 2010. © 2010 Wiley-Liss, Inc. [source] Nonblinking and Nonbleaching Upconverting Nanoparticles as an Optical Imaging Nanoprobe and T1 Magnetic Resonance Imaging Contrast AgentADVANCED MATERIALS, Issue 44 2009Yong Il Park Core/shell upconverting nanoparticles (UCNPs) of NaGdF4:Er3+,Yb3+/NaGdF4 (see figure) are shown to serve as a multimodal imaging probe that works for both background-free optical imaging and magnetic resonance imaging (MRI). The nonblinking and nonbleaching properties of UCNPs can contribute to minimization of possible artifacts in long-term imaging experiments. Owing to Gd3+ ions in the host matrix, contrast is enhanced in T1 -weighted MRI. [source] Differentiation dependent expression of TRPA1 and TRPM8 channels in IMR-32 human neuroblastoma cellsJOURNAL OF CELLULAR PHYSIOLOGY, Issue 1 2009Lauri M. Louhivuori TRPA1 and TRPM8 are transient receptor potential (TRP) channels involved in sensory perception. TRPA1 is a non-selective calcium permeable channel activated by irritants and proalgesic agents. TRPM8 reacts to chemical cooling agents such as menthol. The human neuroblastoma cell line IMR-32 undergoes a remarkable differentiation in response to treatment with 5-bromo-2-deoxyuridine. The cells acquire a neuronal morphology with increased expression of N-type voltage gated calcium channels and neurotransmitters. Here we show using RT-PCR, that mRNA for TRPA1 and TRPM8 are strongly upregulated in differentiating IMR-32 cells. Using whole cell patch clamp recordings, we demonstrate that activators of these channels, wasabi, allyl-isothiocyanate (AITC) and menthol activate membrane currents in differentiated cells. Calcium imaging experiments demonstrated that AITC mediated elevation of intracellular calcium levels were attenuated by ruthenium red, spermine, and HC-030031 as well as by siRNA directed against the channel. This indicates that the detected mRNA level correlate with the presence of functional channels of both types in the membrane of differentiated cells. Although the differentiated IMR-32 cells responded to cooling many of the cells showing this response did not respond to TRPA1/TRPM8 channel activators (60% and 90% for AITC and menthol respectively). Conversely many of the cells responding to these activators did not respond to cooling (30%). This suggests that these channels have also other functions than cold perception in these cells. Furthermore, our results suggest that IMR-32 cells have sensory characteristics and can be used to study native TRPA1 and TRPM8 channel function as well as developmental expression. J. Cell. Physiol. 221: 67,74, 2009. © 2009 Wiley-Liss, Inc [source] Stimulated echo induced misestimates on diffusion tensor indices and its remedyJOURNAL OF MAGNETIC RESONANCE IMAGING, Issue 6 2010Tzu-Chao Chuang PhD Abstract Purpose: To report possible erroneous estimates of diffusion parameters in the twice-refocused spin-echo (TRSE) technique, proposed to eliminate eddy-current-induced geometric distortions in diffusion-weighted echo-planar imaging, when stimulated echo signals are inappropriately included. Materials and Methods: Eleven subjects were included for imaging experiments on two 1.5 Tesla systems using the TRSE sequence. Three versions, two with unbalanced crusher gradients inserted to dephase the stimulated echo from the b = 0 images and one with balanced crusher gradients, were implemented. The apparent diffusion coefficients (ADC) and fractional anisotropy (FA) were derived and compared. Results: The ADCs obtained with unbalanced crusher gradients were closer to values reported in the literature. Stimulated echo led to ADC over-estimations by 34.2%, 50.4%, 54.0%, 51.5%, 24.0%, and 41.9% in the genu of corpus callosum, splenium of corpus callosum, bilateral corona radiata, internal capsule, mediofrontal gyrus, and the cuneus, respectively (P < 0.01), with concomitant reduction in FA in highly anisotropic regions. Over-estimations of diffusion coefficients were found to be roughly equal along all directions. Conclusion: Formation of stimulated echo in the TRSE technique can lead to erroneous estimations of the diffusion parameters, even if no prominent morphological artifacts are seen. J. Magn. Reson. Imaging 2010;31:1522,1529. © 2010 Wiley-Liss, Inc. [source] Implications of bulk motion for diffusion-weighted imaging experiments: Effects, mechanisms, and solutionsJOURNAL OF MAGNETIC RESONANCE IMAGING, Issue 4 2001David G. Norris PhD Abstract This review article describes the effect of bulk motion on diffusion-weighted imaging experiments, and examines methods for correcting the resulting artifacts. The emphasis throughout the article is on two-dimensional imaging of the brain. The effects of translational and rotational motion on the MR signal are described, and the literature concerning pulsatile brain motion is examined. Methods for ameliorating motion effects are divided into three generic categories. The first is methods that should be intrinsically insensitive to macroscopic motion. These include motion-compensated diffusion-weighting schemes, single-shot EPI, projection reconstruction, and line scanning. Of these, only single-shot EPI and projection reconstruction methods can obtain high-quality images without compromising on sensitivity. The second category of methods is those that can be made insensitive to bulk motion. The methods examined here are FLASH and RARE. It is shown that for both sequences motion insensitivity is in general attained only at the cost of a 50% reduction in sensitivity. The final set of methods examined are those that correct for motion, primarily navigator echoes. The properties and limitations of the navigator echo approach are presented, as are those of methods which attempt to correct the acquired data by minimizing image artifacts. The review concludes with a short summary in which the current status of diffusion imaging in the presence of bulk motion is examined. J. Magn. Reson. Imaging 2001;13:486,495. © 2001 Wiley-Liss, Inc. [source] Tip enhanced Raman spectroscopy on azobenzene thiol self-assembled monolayers on Au(111)JOURNAL OF RAMAN SPECTROSCOPY, Issue 10 2009Gennaro Picardi Abstract Tip enhanced Raman spectroscopy (TERS) and imaging experiments in tunnelling (gap) mode were performed on a 2 nm thick azobenzene thiol monolayer grafted on Au(111). A strong dependence on the tunnelling parameters, regulating the gold tip,gold surface gap distance, was observed for the intensity of the enhanced Raman signal. The influence of the incident light polarization is also discussed. Copyright © 2009 John Wiley & Sons, Ltd. [source] A novel epitaxially grown LSO-based thin-film scintillator for micro-imaging using hard synchrotron radiationJOURNAL OF SYNCHROTRON RADIATION, Issue 5 2010Paul-Antoine Douissard The efficiency of high-resolution pixel detectors for hard X-rays is nowadays one of the major criteria which drives the feasibility of imaging experiments and in general the performance of an experimental station for synchrotron-based microtomography and radiography. Here the luminescent screen used for the indirect detection is focused on in order to increase the detective quantum efficiency: a novel scintillator based on doped Lu2SiO5 (LSO), epitaxially grown as thin film via the liquid phase epitaxy technique. It is shown that, by using adapted growth and doping parameters as well as a dedicated substrate, the scintillation behaviour of a LSO-based thin crystal together with the high stopping power of the material allows for high-performance indirect X-ray detection. In detail, the conversion efficiency, the radioluminescence spectra, the optical absorption spectra under UV/visible-light and the afterglow are investigated. A set-up to study the effect of the thin-film scintillator's temperature on its conversion efficiency is described as well. It delivers knowledge which is important when working with higher photon flux densities and the corresponding high heat load on the material. Additionally, X-ray imaging systems based on different diffraction-limited visible-light optics and CCD cameras using among others LSO-based thin film are compared. Finally, the performance of the LSO thin film is illustrated by imaging a honey bee leg, demonstrating the value of efficient high-resolution computed tomography for life sciences. [source] Coherence and wavefront characterization of Si-111 monochromators using double-grating interferometryJOURNAL OF SYNCHROTRON RADIATION, Issue 3 2010Ana Diaz A study of the coherence and wavefront properties of a pseudo-channel-cut monochromator in comparison with a double-crystal monochromator is presented. Using a double-grating interferometer designed for the hard X-ray regime, the complex coherence factor was measured and the wavefront distortions at the sample position were analyzed. A transverse coherence length was found in the vertical direction that was a factor of two larger for the channel-cut monochromator owing to its higher mechanical stability. The wavefront distortions after different optical elements in the beam, such as monochromators and mirrors, were also quantified. This work is particularly relevant for coherent diffraction imaging experiments with synchrotron sources. [source] Analog pixel array detectorsJOURNAL OF SYNCHROTRON RADIATION, Issue 2 2006A. Ercan X-ray pixel array detectors (PADs) are generally thought of as either digital photon counters (DPADs) or X-ray analog-integrating pixel array detectors (APADs). Experiences with APADs, which are especially well suited for X-ray imaging experiments where transient or high instantaneous flux events must be recorded, are reported. The design, characterization and experimental applications of several APAD designs developed at Cornell University are discussed. The simplest design is a `flash' architecture, wherein successive integrated X-ray images, as short as several hundred nanoseconds in duration, are stored in the detector chips for later off-chip digitization. Radiography experiments using a prototype flash APAD are summarized. Another design has been implemented that combines flash capability with the ability to continuously stream X-ray images at slower (e.g. milliseconds) rates. Progress is described towards radiation-hardened APADs that can be tiled to cover a large area. A mixed-mode PAD, design by combining many of the attractive features of both APADs and DPADs, is also described. [source] CCD-based X-ray area detector for time-resolved diffraction experimentsJOURNAL OF SYNCHROTRON RADIATION, Issue 6 2004Naoto Yagi A fast X-ray area detector for diffraction, scattering and imaging experiments at microsecond to millisecond time resolution has been developed. The key element of the detector is a fast (291,frames,s,1) framing camera with three CCDs. A prism forms identical images on the CCDs and the frame rate is increased three times by reading them alternately. In order to convert X-rays into visible light that is detectable with the CCDs, an X-ray image intensifier is used. The camera can also be used with a high-resolution X-ray detector. In both cases it was found to be important to use a phosphor with a short decay time to fully make use of the high-speed framing capability of the camera. Preliminary results of a fibre diffraction experiment on a skeletal muscle and coronary angiography are presented. [source] Combination of multidimensional navigator echoes data from multielement RF coilMAGNETIC RESONANCE IN MEDICINE, Issue 4 2010Junmin Liu Abstract Until now, only one-dimensional navigator-echo techniques have been implemented with multielement RF coils. For the multidimensional navigator echoes, which extract six-degree of freedom motion information from the raw k-space data, an efficient raw data combination approach is needed. In this work, three combination approaches, including summation of the complex raw data, summation following phase alignment, and summation of the squares of the k-space magnitude profiles, were evaluated with the spherical navigator echoes (SNAV) technique. In vivo brain imaging experiments were used to quantify accuracy and precision and demonstrated that SNAVs acquired with an eight-channel head coil can determine the rotation and translation in range up to 10° and 20 mm with subdegree and submillimeter accuracy, respectively. Results from a 3D brain volume realignment experiment showed excellent agreement between baseline images and SNAV-aligned follow-up volumes. Magn Reson Med, 2010. © 2010 Wiley-Liss, Inc. [source] On the steady-state properties of actual flip angle imaging (AFI)MAGNETIC RESONANCE IN MEDICINE, Issue 1 2009Kay Nehrke Abstract AFI (actual flip angle imaging) represents an interesting approach to map the B1 transmit fields by measuring the spatial variations of the effective flip angle. However, the accuracy of the technique relies on the adequate spoiling of transverse magnetization. In the present work configuration theory was employed to develop a proper RF and gradient spoiling scheme for the AFI technique, making the sequence robust against off-resonance without the need of large spoiling gradients. Furthermore, numerical simulations were performed to predict the steady-state signals and, hence, the accuracy of the AFI technique as a function of the sequence and tissue parameters. It is shown that the spoiling properties of the sequence are mainly defined by the phase shift increment , of the RF pulses and the diffusion sensitivity resulting from the unbalanced gradients of the sequence. Adequate spoiling may be achieved for a reasonable range of tissue parameters and flip angles for moderate spoiling gradients if a favorable value for , is chosen. Phantom and in vivo head imaging experiments show an excellent agreement with the theoretical predictions, indicating that the proper operating range of the approach may be reliably predicted by the theory. Magn Reson Med 61:84,92, 2009. © 2008 Wiley-Liss, Inc. [source] Improving k - t SENSE by adaptive regularizationMAGNETIC RESONANCE IN MEDICINE, Issue 5 2007Dan Xu Abstract The recently proposed method known as k - t sensitivity encoding (SENSE) has emerged as an effective means of improving imaging speed for several dynamic imaging applications. However, k - t SENSE uses temporally averaged data as a regularization term for image reconstruction. This may not only compromise temporal resolution, it may also make some of the temporal frequency components irrecoverable. To address that issue, we present a new method called spatiotemporal domain-based unaliasing employing sensitivity encoding and adaptive regularization (SPEAR). Specifically, SPEAR provides an improvement over k - t SENSE by generating adaptive regularization images. It also uses a variable-density (VD), sequentially interleaved k - t space sampling pattern with reference frames for data acquisition. Simulations based on experimental data were performed to compare SPEAR, k - t SENSE, and several other related methods, and the results showed that SPEAR can provide higher temporal resolution with significantly reduced image artifacts. Ungated 3D cardiac imaging experiments were also carried out to test the effectiveness of SPEAR, and real-time 3D short-axis images of the human heart were produced at 5.5 frames/s temporal resolution and 2.4 × 1.2 × 8 mm3 spatial resolution with eight slices. Magn Reson Med 57:918,930, 2007. © 2007 Wiley-Liss, Inc. [source] Mapping ischemic risk region and necrosis in the isolated heart using EPR imagingMAGNETIC RESONANCE IN MEDICINE, Issue 6 2003Murugesan Velayutham Abstract Reperfusion of ischemic tissue is a common event in the treatment of heart attack and stroke. To study disease pathogenesis, methods are required to measure tissue perfusion and area at risk, as well as localized regions of injury. While histology can provide this information, its destructive nature precludes assessment of time course. Thus, there is a critical need for a noninvasive technique to obtain this information. To map myocardial redox state as a possible index of cellular ischemia and viability, electron paramagnetic resonance (EPR) imaging experiments were performed on isolated rat hearts before and after the onset of regional ischemia using nitroxide spin labels. With coronary artery occlusion, the EPR images clearly showed the risk region as a void of lower intensity that reversed upon reperfusion. The extent of risk region in the heart was similar in EPR imaging and histological measurements. The unique information obtained regarding the time course of changes in redox metabolism of the risk region and normal myocardium can provide important insights regarding the mechanisms of myocardial injury during and following ischemia. Magn Reson Med 49:1181,1187, 2003. © 2003 Wiley-Liss, Inc. [source] In vivo oxygen detection using exogenous hemoglobin as a contrast agent in magnetic resonance microscopyMAGNETIC RESONANCE IN MEDICINE, Issue 4 2003Phillip Z. Sun Abstract In this work we show that exogenous molecular hemoglobin (Hb) is an effective indicator of relative local oxygen tension in magnetic resonance (MR) microscopy studies in vivo. This approach is more sensitive than other MRI oximetry methods; it can be used at higher resolutions and in specimens with no blood oxygen level-dependent (BOLD) effects. Using injection studies in flies, we show that Hb can permeate through relatively dense neural tissue, and that it is not obviously disruptive to physiology. Hb-injected flies show large changes in signal intensity (40,50%) when external O2 levels are manipulated artificially from 0% to 21%. Oxygen-dependent contrast changes produced by exogenous Hb are detected in T2 -weighted imaging experiments, and can be roughly calibrated if necessary. These studies demonstrate the feasibility of a contrast agent technique that may be useful for functional MRI (fMRI) studies of metabolism at tens of microns resolution. Magn Reson Med 49:609,614, 2003. © 2003 Wiley-Liss, Inc. [source] Reducing oblique flow effects in interleaved EPI with a centric reordering techniqueMAGNETIC RESONANCE IN MEDICINE, Issue 4 2001Gabriele Beck Abstract Segmented interleaved echo planar imaging offers a fast and efficient approach to magnetic resonance angiography. Unfortunately, this technique is particularly sensitive to oblique flow in the imaging plane. In this work, a mathematical analysis of oblique flow effects for several types of k -space coverage is presented. The conventional linear acquisition scheme, an alternating centric and a nonalternating centric encoding scheme are compared with respect to their flow properties. It is shown both by simulations and imaging experiments that artifacts from oblique in-plane flow are effectively reduced by both centric reordered phase-encoding schemes. The nonalternating centric acquisition scheme is preferred to the alternating centric scheme due to the smoother phase error transition in k -space in the presence of obliquely-angled flow. Magn Reson Med 45:623,629, 2001. © 2001 Wiley-Liss, Inc. [source] Perspectives for imaging mass spectrometry in the proteomics landscapePROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 4 2009Luke MacAleese Abstract A number of techniques are used in the field of proteomics that can be combined to get the most molecular information from a specific biological sample, fluid or tissue. Imaging techniques are often used to obtain local information from tissue samples. However, imaging experiments are often staining experiments, which rely on specific or aspecific interactions between fluorescent markers and pre-defined (families of) peptide or protein. Therefore, imaging is often used as a screening or validation tool for the local presence of proteins that have been identified by other means. Imaging mass spectrometry (IMS) combines the advantages of MS and microscopy in a single experiment. It is a technique that does not require any labeling of the analytes and provides a high multiplexing capability combined with the potential for analyte identification. It enables simultaneous detection of potentially all peptides and proteins present at a tissue surface and is used for the determination and identification of tissue-specific disease markers. The workflows of IMS experiments closely resemble those of conventional proteomics. In this review, we describe IMS experiments step-by-step to position and evaluate the role of IMS in a comparative proteomics landscape. We illustrate in a concise review that IMS is a true discovery oriented tool for proteomics that seamlessly integrates in conventional proteomics workflows and can be perceived as either an alternative or complementary proteomics technique. [source] Response profiles to amino acid odorants of olfactory glomeruli in larval Xenopus laevisTHE JOURNAL OF PHYSIOLOGY, Issue 2 2007Ivan Manzini Glomeruli in the vertebrate olfactory bulb (OB) appear as anatomically discrete modules receiving direct input from the olfactory epithelium (OE) via axons of olfactory receptor neurons (ORNs). The response profiles with respect to amino acids (AAs) of a large number of ORNs in larval Xenopus laevis have been recently determined and analysed. Here we report on Ca2+ imaging experiments in a nose,brain preparation of the same species at the same developmental stages. We recorded responses to AAs of glomeruli in the OB and determined the response profiles to AAs of individual glomeruli. We describe the general features of AA-responsive glomeruli and compare their response profiles to AAs with those of ORNs obtained in our previous study. A large number of past studies have focused either on odorant responses in the OE or on odorant-induced responses in the OB. However, a thorough comparison of odorant-induced responses of both stages, ORNs and glomeruli of the same species is as yet lacking. The glomerular response profiles reported herein markedly differ from the previously obtained response profiles of ORNs in that glomeruli clearly have narrower selectivity profiles than ORNs. We discuss possible explanations for the different selectivity profiles of glomeruli and ORNs in the context of the development of the olfactory map. [source] Using non-invasive magnetic resonance imaging (MRI) to assess the reduction of Cr(VI) using a biofilm,palladium catalystBIOTECHNOLOGY & BIOENGINEERING, Issue 1 2010D.A. Beauregard Abstract Industrial waste streams may contain contaminants that are valuable like Pd(II) and/or toxic and mutagenic like Cr(VI). Using Serratia sp. biofilm the former was biomineralized to produce a supported nanocrystalline Pd(0) catalyst, and this biofilm,Pd heterogeneous catalyst was then used to reduce Cr(VI) to less dangerous Cr(III) at room temperature, with formate as the electron donor. Cr(VI)(aq) is non-paramagnetic while Cr(III)(aq) is paramagnetic, which enabled spatial mapping of Cr species concentrations within the reactor cell using non-invasive magnetic resonance (MR) imaging experiments. Spatial reactivity heterogeneities were thus examined. In batch reactions, these could be attributed primarily to heterogeneity of Pd(0) distribution and to the development of gas bubbles within the reactor. In continuous flow reactions, spatial reactivity heterogeneities resulted primarily from heterogeneity of Cr(VI) delivery. Biotechnol. Bioeng. 2010;107: 11,20. © 2010 Wiley Periodicals, Inc. [source] | ||||||||||||||||