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Selected AbstractsRapid evolution and the convergence of ecological and evolutionary timeECOLOGY LETTERS, Issue 10 2005Nelson G. Hairston Jr Abstract Recent studies have documented rates of evolution of ecologically important phenotypes sufficiently fast that they have the potential to impact the outcome of ecological interactions while they are underway. Observations of this type go against accepted wisdom that ecological and evolutionary dynamics occur at very different time scales. While some authors have evaluated the rapidity of a measured evolutionary rate by comparing it to the overall distribution of measured evolutionary rates, we believe that ecologists are mainly interested in rapid evolution because of its potential to impinge on ecological processes. We therefore propose that rapid evolution be defined as a genetic change occurring rapidly enough to have a measurable impact on simultaneous ecological change. Using this definition we propose a framework for decomposing rates of ecological change into components driven by simultaneous evolutionary change and by change in a non-evolutionary factor (e.g. density dependent population dynamics, abiotic environmental change). Evolution is judged to be rapid in this ecological context if its contribution to ecological change is large relative to the contribution of other factors. We provide a worked example of this approach based on a theoretical predator,prey interaction [Abrams, P. & Matsuda, H. (1997). Evolution, 51, 1740], and find that in this system the impact of prey evolution on predator per capita growth rate is 63% that of internal ecological dynamics. We then propose analytical methods for measuring these contributions in field situations, and apply them to two long-term data sets for which suitable ecological and evolutionary data exist. For both data sets relatively high rates of evolutionary change have been found when measured as character change in standard deviations per generation (haldanes). For Darwin's finches evolving in response to fluctuating rainfall [Grant, P.R. & Grant, B.R. (2002). Science, 296, 707], we estimate that evolutionary change has been more rapid than ecological change by a factor of 2.2. For a population of freshwater copepods whose life history evolves in response to fluctuating fish predation [Hairston, N.G. Jr & Dillon, T.A. (1990). Evolution, 44, 1796], we find that evolutionary change has been about one quarter the rate of ecological change , less than in the finch example, but nevertheless substantial. These analyses support the view that in order to understand temporal dynamics in ecological processes it is critical to consider the extent to which the attributes of the system under investigation are simultaneously changing as a result of rapid evolution. [source] EVOLUTION OF SUBTERRANEAN DIVING BEETLES (COLEOPTERA: DYTISCIDAE HYDROPORINI, BIDESSINI) IN THE ARID ZONE OF AUSTRALIAEVOLUTION, Issue 12 2003Remko Leys Abstract Calcrete aquifers in arid inland Australia have recently been found to contain the world's most diverse assemblage of subterranean diving beetles (Coleoptera: Dytiscidae). In this study we test whether the adaptive shift hypothesis (ASH) or the climatic relict hypothesis (CRH) is the most likely mode of evolution for the Australian subterranean diving beetles by using a phylogeny based on two sequenced fragments of mitochondrial genes (CO1 and 16S-tRNA-ND1) and linearized using a relaxed molecular clock method. Most individual calcrete aquifers contain an assemblage of diving beetle species of distantly related lineages and/or a single pair of sister species that significantly differ in size and morphology. Evolutionary transitions from surface to subterranean life took place in a relatively small time frame between nine and four million years ago. Most of the variation in divergence times of the sympatric sister species is explained by the variation in latitude of the localities, which correlates with the onset of aridity from the north to the south and with an aridity maximum in the Early Pliocene (five mya). We conclude that individual calcrete aquifers were colonized by several distantly related diving beetle lineages. Several lines of evidence from molecular clock analyses support the CRH, indicating that all evolutionary transitions took place during the Late Miocene and Early Pliocene as a result of aridification. [source] COMPARATIVE PHYLOGENETIC ANALYSIS OF THE EVOLUTION OF SEMELPARITY AND LIFE HISTORY IN SALMONID FISHESEVOLUTION, Issue 5 2002Bernard J. Crespi Abstract The selective pressures involved in the evolution of semelparity and its associated life-history traits are largely unknown. We used species-level analyses, independent contrasts, and reconstruction of ancestral states to study the evolution of body length, fecundity, egg weight, gonadosomatic index, and parity (semelparity vs. degree of iteroparity) in females of 12 species of salmonid fishes. According to both species-level analysis and independent contrasts analysis, body length was positively correlated with fecundity, egg weight, and gonadosomatic index, and semelparous species exhibited a significantly steeper slope for the regression of egg weight on body length than did iteroparous species. Percent repeat breeding (degree of iteroparity) was negatively correlated with gonadosomatic index using independent contrasts analysis. Semelparous species had significantly larger eggs by species-level analysis, and the egg weight contrast for the branch on which semelparity was inferred to have originated was significantly larger than the other egg weight contrasts, corresponding to a remarkable increase in egg weight. Reconstruction of ancestral states showed that egg weight and body length apparently increased with the origin of semelparity, but fecundity and gonadosomatic index remained more or less constant or decreased. Thus, the strong evolutionary linkages between body size, fecundity, and gonadosomatic index were broken during the transition from iteroparity to semelparity. These findings suggest that long-distance migrations, which increase adult mortality between breeding episodes, may have been necessary for the origin of semelparity in Pacific salmon, but that increased egg weight, leading to increased juvenile survivorship, was crucial in driving the transition. Our analyses support the life-history hypotheses that a lower degree of repeat breeding is linked to higher reproductive investment per breeding episode, and that semelparity evolves under a combination of relatively high juvenile survivorship and relatively low adult survivorship. [source] Effects of sequential depositional basins on lake response to urban and agricultural pollution: a palaeoecological analysis of the Qu'Appelle Valley, Saskatchewan, CanadaFRESHWATER BIOLOGY, Issue 3 2000Aruna S. Dixit 1. Palaeolimnological analyses of fossil diatoms and pigments were conducted in four lakes of the Qu'Appelle Valley, Saskatchewan, Canada, to quantify the effect of upstream depositional basins on lake response to urban and agricultural human activities. Pasqua, Echo, Mission and Katepwa lakes exhibit similar modern limnological characteristics, lie sequentially downstream from urban point sources of growth-limiting nitrogen (N), yet drain similarly large areas of farmland (38,40 × 103 km2). 2. Analyses indicated that all lakes were naturally productive, contained eutrophic diatoms (i.e. Stephanodiscus niagarae, S. hantzchii, S. parvus and Aulacoseira granulata), and supported blooms of colonial (as myxoxanthophyll) and potentially toxic N-fixing cyanobacteria (aphanizophyll), even prior to the onset of European settlement (ca. 1890) and urban development (ca. 1930). 3. The onset of agricultural practices ca. 1890 had only modest effects on algal communities in the Qu'Appelle lakes, with subtle increases in eutrophic diatom species (Pasqua, Mission and Katepwa lakes) and 25,50% increases in pigment-inferred algal abundance (Echo, Mission and Katepwa lakes). 4. Despite naturally high production, total algal abundance (,-carotene) in upstream Pasqua Lake increased by more than 350% after intense urbanization beginning ca. 1930, while eutrophic diatoms became more common and cyanobacteria populations increased ten-fold. Principal components analysis (PCA) explained 64% of diatom variance, and identified three eras corresponding to baseline, pre-agricultural communities (1776,1890), an era of high production (ca. 1925,1960) and recent variable community composition following tertiary treatment of urban sewage (ca. 1977,1990). 5. Analyses of three downstream lakes demonstrated that urban impacts following 1930 remained evident in fossil profiles of ,-carotene and myxoxanthophyll, but that large blooms of N-fixing cyanobacteria were restricted to the past 25 years at downstream Mission and Katepwa lakes. Similarly, PCA showed that fossil diatom assemblages exhibited little directional variation until the 1970s. 6. Together, these analyses support the hypothesis that upstream lakes were effective at reducing the impacts of point-source urban nutrients on downstream lakes. In contrast, diffuse agricultural activities had only limited impacts on water quality and these were less well ameliorated by upstream basins. [source] An actualistic perspective into Archean worlds , (cyano-)bacterially induced sedimentary structures in the siliciclastic Nhlazatse Section, 2.9 Ga Pongola Supergroup, South AfricaGEOBIOLOGY, Issue 1 2008N. NOFFKE ABSTRACT Extensive microbial mats colonize sandy tidal flats that form along the coasts of today's Earth. The microbenthos (mainly cyanobacteria) respond to the prevailing physical sediment dynamics by biostabilization, baffling and trapping, as well as binding. This biotic,physical interaction gives rise to characteristic microbially induced sedimentary structures (MISS) that differ greatly from both purely physical structures and from stromatolites. Actualistic studies of the MISS on modern tidal flats have been shown to be the key for understanding equivalent fossil structures that occur in tidal and shelf sandstones of all Earth ages. However, until now the fossil record of Archean MISS has been poor, and relatively few specimens have been found. This paper describes a study location that displays a unique assemblage with a multitude of exceptionally preserved MISS in the 2.9-Ga-old Pongola Supergroup, South Africa. The ,Nhlazatse Section' includes structures such as ,erosional remnants and pockets', ,multidirected ripple marks', ,polygonal oscillation cracks', and ,gas domes'. Optical and geochemical analyses support the biogenicity of microscopic textures such as filamentous laminae or ,orientated grains'. Textures resembling filaments are lined by iron oxide and hydroxides, as well as clay minerals. They contain organic matter, whose isotope composition is consistent with carbon of biological origin. The ancient tidal flats of the Nhlazatse Section record four microbial mat facies that occur in modern tidal settings as well. We distinguish endobenthic and epibenthic microbial mats, including planar, tufted, and spongy subtypes. Each microbial mat facies is characterized by a distinct set of MISS, and relates to a typical tidal zone. The microbial mat structures are preserved in situ, and are consistent with similar features constructed today by benthic cyanobacteria. However, other mat-constructing microorganisms also could have formed the structures in the Archean tidal flats. [source] Gene structure and expression of nanos (nos) and oskar (osk) orthologues of the vector mosquito, Culex quinquefasciatusINSECT MOLECULAR BIOLOGY, Issue 5 2008J. Juhn Abstract The products of the maternal-effect genes, nanos (nos) and oskar (osk), are important for the development of germ cells in insects. Furthermore, these genes have been proposed as candidates for donating functional DNA regulatory sequences for use in gene drive systems to control transmission of mosquito-borne pathogens. The nos and osk genes of the cosmopolitan vector mosquito, Culex quinquefasciatus, encode proteins with domains common to orthologues found in other mosquitoes. Expression analyses support the conclusion that the role of these genes is conserved generally among members of the nematocera. Hybridization in situ analyses reveal differences in mRNA distribution in early embryos in comparison with the cyclorraphan, Drosophila melanogaster, highlighting a possible feature in the divergence of the clades each insect represents. [source] Sensitivity of comparative analyses to population variation in trait values: clutch size and cavity excavation tendenciesJOURNAL OF AVIAN BIOLOGY, Issue 4 2000Mikko Mönkkönen Importance of within-species (population) variation in trait values to correlations of traits among species has received very little attention in comparative analyses. We use randomization and bootstrapping techniques to provide a sensitivity analysis of the influence of population variation on correlations between clutch size and propensity to excavate. These traits are predicted to be negatively correlated under the limited breeding opportunities hypothesis, but opposing results have been found by two studies using different population estimates for western Palearctic Paridae. Our analyses support the limited breeding opportunities hypothesis and suggest low sensitivity to within-species variation in trait values. Yet, a small proportion of population data provide non-significant results. Checking for the effects of this variation on the postulated association between traits is necessary in comparative studies if one wishes to avoid type I and type II errors. [source] Modulation of UDP-glucuronosyltransferase 1A1 in primary human hepatocytes by prototypical inducers,JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY, Issue 2 2005Cornelia M. Smith Abstract The primary objective of this study was to evaluate the modulation of UGT1A1 expression in human hepatocytes using prototypical CYP450 inducers. A bank of 16 human livers was utilized to obtain an estimate of the range of UGT1A1 protein expression and catalytic activity. Concentration-dependent changes in UGT1A1 response were evaluated in hepatocyte cultures after treatment with 3-methylchloranthrene, ,-napthoflavone, rifampicin, or phenobarbital. Pharmacodynamic analyses of UGT1A1 expression were conducted and compared to those of CYP450 after treatment with inducers in 2,3 different hepatocyte preparations. Additionally, expression of UGT1A1 mRNA and protein was evaluated in human hepatocytes treated with 14 different compounds known to activate differentially the human pregnane-X-receptor or constitutive androstane receptor. Pharmacodynamic modeling revealed EC50 values statistically significant between UGT1A1 and CYP2B6 after treatment with PB, but not statistically distinguishable between UGT1A1 and CYP's 1A2 or 3A4 after treatment with 3-methylchloranthrene or rifampicin, respectively. UGT1A1 was most responsive to the pregnane-X-receptor-agonists rifampicin, ritonavir, and clotrimazole at the mRNA level and, to a lesser extent, the constitutive androstane receptor-activators, phenobarbital and phenytoin. Pharmacodynamic analyses support a mechanism of coordinate regulation between UGT1A1 and a number of CYP450 enzymes by multiple nuclear receptors. © 2005 Wiley Periodicals, Inc. J Biochem Mol Toxicol 19:96,108, 2005; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/jbt.20058 [source] Evolution of the second orangutan: phylogeny and biogeography of hominid originsJOURNAL OF BIOGEOGRAPHY, Issue 10 2009John R. Grehan Abstract Aim, To resolve the phylogeny of humans and their fossil relatives (collectively, hominids), orangutans (Pongo) and various Miocene great apes and to present a biogeographical model for their differentiation in space and time. Location, Africa, northern Mediterranean, Asia. Methods, Maximum parsimony analysis was used to assess phylogenetic relationships among living large-bodied hominoids (= humans, chimpanzees, bonobos, gorillas, orangutans), and various related African, Asian and European ape fossils. Biogeographical characteristics were analysed for vicariant replacement, main massings and nodes. A geomorphological correlation was identified for a clade we refer to as the ,dental hominoids', and this correlation was used to reconstruct their historical geography. Results, Our analyses support the following hypotheses: (1) the living large-bodied hominoids represent a monophyletic group comprising two sister clades: humans + orangutans, and chimpanzees (including bonobos) + gorillas (collectively, the African apes); and (2) the human,orangutan clade (dental hominoids) includes fossil hominids (Homo, australopiths, Orrorin) and the Miocene-age apes Hispanopithecus, Ouranopithecus, Ankarapithecus, Sivapithecus, Lufengpithecus, Khoratpithecus and Gigantopithecus (also Plio-Pleistocene of eastern Asia). We also demonstrate that the distributions of living and fossil genera are largely vicariant, with nodes of geographical overlap or proximity between Gigantopithecus and Sivapithecus in Central Asia, and between Pongo, Gigantopithecus, Lufengpithecus and Khoratpithecus in East Asia. The main massing is represented by five genera and eight species in East Asia. The dental hominoid track is spatially correlated with the East African Rift System (EARS) and the Tethys Orogenic Collage (TOC). Main conclusions, Humans and orangutans share a common ancestor that excludes the extant African apes. Molecular analyses are compromised by phenetic procedures such as alignment and are probably based on primitive retentions. We infer that the human,orangutan common ancestor had established a widespread distribution by at least 13 Ma. Vicariant differentiation resulted in the ancestors of hominids in East Africa and various primarily Miocene apes distributed between Spain and Southeast Asia (and possibly also parts of East Africa). The geographical disjunction between early hominids and Asian Pongo is attributed to local extinctions between Europe and Central Asia. The EARS and TOC correlations suggest that these geomorphological features mediated establishment of the ancestral range. [source] Phylogenetic inference regarding Parergodrilidae and Hrabeiella periglandulata (,Polychaeta', Annelida) based on 18S rDNA, 28S rDNA and COI sequencesJOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 4 2004J. Jördens Abstract Parergodrilidae and Hrabeiella periglandulata are Annelida showing different combinations of clitellate-like and aclitellate characters. Similarities between both of these taxa and Clitellata have widely been regarded as the result of convergent evolution due to similar selection pressures. The position of the three taxa in the phylogenetic system of Annelida is still in debate. However, in analyses based on 18S rDNA sequences a close relationship of Parergodrilidae with Orbiniidae and Questidae was suggested. To infer their phylogeny the sequences of the 28S rDNA and of the cytochrome oxidase I (COI) gene of Stygocapitella subterranea, Parergodrilus heideri and H. periglandulata were determined. The data were extended by sequences of various species including species from Clitellata and Orbiniidae. Prior to tree reconstruction the dataset was analysed in detail for phylogenetic content by applying a sliding window analysis, a likelihood mapping and Modeltest V.3.04. Subsequently, generalized parsimony and maximum likelihood methods were employed. Clade robustness was estimated by bootstrapping. In addition, combined analyses of the sequences of 18S rDNA and 28S rDNA as well as of 18S rDNA, 28S rDNA and COI were performed. The combination of the data of the two structure genes and a mitochondrial gene improved the resolution obtained with the single datasets slightly. These analyses support a close relationship of Parergodrilidae and Orbiniidae but cannot resolve the position of H. periglandulata. In every analysis Clitellata cluster within ,Polychaeta', confirming previous investigations. Zusammenfassung Die Parergodrilidae und Hrabeiella periglandulata sind Annelida, die unterschiedliche Kombinationen von Clitellaten- und Nicht-Clitellaten-Merkmalen aufweisen. Die Übereinstimmungen zwischen Parergodrilidae, H. periglandulata und Clitellata sind jedoch meistens als Ergebnis konvergenter Evolution auf Grund ähnlicher Selektionsdrücke gedeutet worden. Die Stellung der drei Taxa im phylogenetischen System der Annelida ist noch immer in Diskussion. Analysen, die auf 18S rDNA Sequenzen basieren, weisen jedoch auf eine wahrscheinliche engere Verwandtschaft der Parergodrilidae mit den Orbiniidae und Questidae hin. Um die Phylogenie dieser Taxa aufzuklären, wurden die Sequenzen der 28S rDNA und des COI Gens von Stygocapitella subterranea, P. heideri and H. periglandulata bestimmt. Die Daten wurden durch Sequenzen verschiedener weiterer Arten erweitert, die auch Arten der Clitellata und Orbiniidae umfassen. Vor der phylogenetischen Rekonstruktion wurde der Datensatz im Detail auf das enthaltene phylogenetische Signal durch eine Sliding Window Analyse, ein Likelihood Mapping und Modeltest V.3.04 getestet. Anschließend wurden generalisierte Parsimonie und Maximum Likelihood Methoden angewendet. Die Robustheit der Bäume wurde durch Parsimonie-Bootstrapping abgeschätzt. Zusätzlich wurden kombinierte Analysen der Sequenzen von 18S rDNA und 28S rDNA als auch von 18S rDNA, 28S rDNA und COI durchgeführt. Die Kombination der Daten der beiden Strukturgene und eines mitochondrialen Gens verbesserten geringfügig die Auflösung verglichen mit den Einzelanalysen. Diese Analysen unterstützen eine nahe Verwandtschaft der Parergodrilidae mit den Orbiniidae aber die Stellung von H. periglandulata kann nicht angegeben werden. In jeder Analyse bilden die Clitellata ein Cluster innerhalb der ,Polychaeta', eine Bestätigung früherer Untersuchungen. [source] Monophyletic groups within ,higher land birds', comparison of morphological and molecular dataJOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, Issue 4 2003G. Mayr Abstract The relationships within the ,higher land birds' and putatively related taxa are analysed in a study using 89 morphological characters and DNA sequences of three nuclear, protein-coding genes, c- myc, RAG-1, and myoglobin intron II. Separate analyses of the different data sets and a ,total evidence' analysis in which the data sets of the morphological and molecular analyses were combined are compared. All three analyses support the hitherto disputed sister group relationship between Pici (Ramphastidae, Indicatoridae and Picidae) and Galbulae (Galbulidae and Bucconidae). Previously unrecognized osteological synapomorphies of this clade are presented. All analyses further resulted in monophyly of the taxon [Aegothelidae + (Apodidae/Hemiprocnidae + Trochilidae)]. Analysis of the morphological data and of the combined data set also supported monophyly of the taxon [Strigiformes + (Falconidae + Accipitridae)]. The morphological data further support monophyly of the taxon (Upupidae + Bucerotidae). Other placements in the three analyses received either no or only weak bootstrap support. [source] Female mating success and risk of pre-reproductive death in a protandrous grasshopperOIKOS, Issue 2 2002Raúl Cueva Del Castillo Numerous studies have assessed the adaptive value of protandry for males in several insect species, considering that male emergence is determined by female availability. However, the possible advantage of the time of emergence for females on their mating success in protandrous insect species has only been explored theoretically. By studying the grasshopper Sphenarium purpurascens we evaluated the hypothesis that late emergence could be adaptive for females. If female maturation occurs when the population density is higher and the sex ratio (males/females) is biased to males, their probability of mating increases. Thus, in this study we estimated (1) the opportunity for mating in females as a function of their sexual maturation time, population density, and sex ratio at the moment they reached sexual maturity. In addition, (2) an analysis incorporating female body size and the total number of female matings was performed. Both analyses support the occurrence of protandry in the studied population. Under the first approach, females with intermediate maturation time had a higher probability of being mated than earlier and late matured females. Thus, it suggests that stabilising selection is acting on female maturation time and this may affect selection on male maturation time. Furthermore, the proportion of mated females increased when the sex ratio was biased to males, and stabilising selection on maturation time was detected also. However, the number of matings of a female depended on her body size. Females with larger body size had more matings than smaller ones at the beginning of the reproductive season. Because selection acts differently on maturation time in males and females of S. purpurascens this result is consistent with a condition for the maintenance of protandry in the population. The present results are discussed in the light of the models for the evolution of protandry. [source] Prenatal detection of structural abnormalities of chromosome 18: associations with interphase fluorescence in situ hybridization (FISH) and maternal serum screeningPRENATAL DIAGNOSIS, Issue 8 2002Michael D. Graf Abstract We describe two cases of prenatally ascertained isochromosome 18. Case 1 included both an isochromosome 18p and an isochromosome 18q, while Case 2 involved only an isochromosome 18q. Both of these cases were associated with a positive maternal serum triple screen trisomy 18 risk (greater than 1 in 100 risk). In addition, fluorescence in situ hybridization (FISH) was performed on uncultured amniotic fluid interphase cells in both cases looking for aneuploidy for chromosomes 13, 18, 21, X and Y. The results of the interphase analyses support the common knowledge that careful interpretation of interphase FISH analysis is necessary and that results should be followed by full cytogenetic analysis. To our knowledge these are the first reported cases of structurally abnormal chromosomes 18 being associated with a positive maternal serum triple screen for trisomy 18. Copyright © 2002 John Wiley & Sons, Ltd. [source] The Molecular Evolution and Structural Organization of Group I Introns at Position 1389 in Nuclear Small Subunit rDNA of MyxomycetesTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 1 2007ODD-GUNNAR WIKMARK ABSTRACT. The number of nuclear group I introns from myxomycetes is rapidly increasing in GenBank as more rDNA sequences from these organisms are being sequenced. They represent an interesting and complex group of intervening sequences because several introns are mobile (or inferred to be mobile) and many contain large and unusual insertions in peripheral loops. Here we describe related group I introns at position 1389 in the small subunit rDNA of representatives from the myxomycete family Didymiaceae. Phylogenetic analyses support a common origin and mainly vertical inheritance of the intron. All S1389 introns from the Didymiaceae belong to the IC1 subclass of nuclear group I introns. The central catalytic core region of about 100 nt appears divergent in sequence composition even though the introns reside in closely related species. Furthermore, unlike the majority of group I introns from myxomycetes the S1389 introns do not self-splice as naked RNA in vitro under standard conditions, consistent with a dependence on host factors for folding or activity. Finally, the myxomycete S1389 introns are exclusively found within the family Didymiaceae, which suggests that this group I intron was acquired after the split between the families Didymiaceae and Physaraceae. [source] Finding and solving problems in software new product developmentTHE JOURNAL OF PRODUCT INNOVATION MANAGEMENT, Issue 2 2002Willow A. Sheremata New product development is notoriously difficult, and software new product development particularly so. Although a great deal of research has investigated new product development, projects developing new software products continue to have problems meeting their goals. In fact, one line of research proposes new product development is difficult because it must solve an ongoing stream of complex problems. I integrate this line of research with two others to develop a conceptual framework of new product development as a process of finding and solving problems. From this framework, I develop four hypotheses that predict the probability projects developing new products will attain their development schedule and product quality goals. More specifically, I hypothesize that projects that generate access to, and integrate, large quantities of creative ideas, in-depth knowledge, and accurate information, should increase their probability of attaining schedule and product quality goals. Projects developing new products should both generate and integrate this "knowledge" to solve the problems that stand between them and their goals. However, how projects find problems also matters. Projects that search to identify problems earlier, rather than later, should also increase their probability of meeting schedule and product quality goals. To test these hypotheses I gathered data on 33 projects that tried to develop new software products from 23 firms, through interviews and questionnaires. Results from regression analyses support three out of four hypotheses. The projects that had high levels of both knowledge generation and integration had a significantly higher probability of attaining their product quality goals, but not their schedule goals. In contrast, projects that merely searched to find problems had a higher probability of attaining both goals. Moreover, projects that not only generated and integrated knowledge to solve problems, but also searched to find them, had the highest probability of attaining their product quality goals. This study illustrates the usefulness of modeling new product development as a bundle of problems to be found and solved. These results suggest that projects that combine practices to implement high levels of both knowledge generation and integration,not just one or the other,increase their chances of meeting product quality goals. This in turn suggests that focus on any single process or practice may be misplaced. Moreover, proactive search for problems may increase projects' chances of meeting both schedule and product quality goals. In fact, search for problems was highly significant in this study, which suggests the way projects identify problems deserves further study. Although these prescriptions are preliminary, this study suggests they can help projects,and their managers,embody their visions in products and deliver those products to market. et. [source] Phylogenetic patterns of diversification in a clade of Neotropical frogs (Anura: Aromobatidae: Mannophryne)BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 1 2009JESÚS MANZANILLA We used partial sequences of mitochondrial 16S and cytochrome oxidase I genes to perform a phylogenetic study of collared frogs (Anura: Aromobatidae: Mannophryne), a genus endemic to Venezuela and the islands of Trinidad and Tobago. We analysed 1.2 kb from 13 of the 15 described species of Mannophryne. Maximum parsimony, maximum likelihood and Bayesian analyses support the monophyly of Mannophryne. Mannophryne consists of three deeply differentiated clades that split from each other in a relatively short period of time. The diversification of Mannophryne occurred well before the glacial-interglacial periods of the Quaternary. Our data support the taxonomic validity of M. olmonae, a species endemic to Tobago Island. Mannophryne olmonae is more closely related to the continental species Mannophryne riveroi than to the Trinidad island endemic Mannophryne trinitatis. As in most tropical clades of frogs, molecular evidence indicates that species richness in Mannophryne is largely underestimated and, consequently, current priorities for conservation are inadequate. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 97, 185,199. [source] A tale of two analyses: estimating the consequences of shifts in hexapod diversificationBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 1 2003PETER J. MAYHEW I present a novel descriptive (non-statistical) method to help identify the location and importance of shifts in diversification across a phylogeny. The method first estimates radiation rates across terminal higher taxa and then subjects these rates to a parsimony analysis across the phylogeny. The reconstructions define the magnitude, direction and influence of past shifts in realized diversification rates across nodes. I apply the method to data on the extant hexapod orders. The results indicate that the Coleoptera (beetles) and Diptera (flies) have contributed large upward shifts in diversification tendency, without which, under the model employed, global species richness would be reduced by 20% and 6%, respectively. The origin of Neoptera (insects with wing flexion), identified elsewhere as a significant radiation, may represent a large positive, a large negative or zero influence on current species richness, depending on the assumed phylogeny and parsimony method. The most influential radiations are attributable to the origin of the Eumetabola (insects with complete metamorphosis plus bugs and their relatives) and Pterygota (winged insects), but there is presently only weak evidence that they represent significant shifts in underlying diversification tendency. These analyses support some but not all results of previous phylogenetic analyses and the identity of the most important shift therefore remains elusive. New methodology involving comparisons across multiple taxa is likely to be necessary. © 2003 The Linnean Society of London, Biological Journal of the Linnean Society, 2003, 80, 23,36. [source] A combined approach to the phylogeny of Cephalopoda (Mollusca)CLADISTICS, Issue 5 2004A. R. Lindgren Cephalopoda represents a highly diverse group of molluscs, ranging in habitat from coastal regions to deep benthic waters. While cephalopods remain at the forefront of modern biology, in providing insight into fields such as neurobiology and population genetics, little is known about the relationships within the group. This study provides a comprehensive phylogenetic analysis of Cephalopoda (Mollusca) using a combination of molecular and morphological data. Four loci (three nuclear 18S rRNA, fragments of 28S rRNA and histone H3 and one mitochondrial cytochrome c oxidase subunit I) were combined with 101 morphological characters to test the relationships of 60 species of cephalopods, with emphasis within Decabrachia (squids and cuttlefishes). Individual and combined data sets were analyzed using the direct optimization method, with parsimony as the optimality criterion. Analyses were repeated for 12 different parameter sets accounting for a range of indel/change and transversion/transition cost ratios. Most analyses support the monophyly of Cephalopoda, Nautiloidea, Coleoidea and Decabrachia, however, the monophyly of Octobrachia was refuted due to the lack of support for a Cirroctopoda + Octopoda group. When analyzing all molecular evidence in combination and for total evidence analyses, Vampyromorpha formed the sister group to Decabrachia under the majority of parameters, while morphological data and some individual data sets supported a sister relationship between Vampyromorpha and Octobrachia. Within Decabrachia, a relationship between the sepioids Idiosepiida, Sepiida, Sepiolida and the teuthid Loliginidae was supported. Spirulida fell within the teuthid group in most analyses, further rendering Teuthida paraphyletic. Relationships within Decabrachia and specifically Oegopsida were found to be highly parameter-dependent. © The Willi Hennig Society 2004. [source] Conformational analysis, Part 41.JOURNAL OF PHYSICAL ORGANIC CHEMISTRY, Issue 6 2006-unsaturated carbonyl compounds, A modelling, LIS/NMR investigation of the conformations of Abstract A novel Lanthanide Induced Shift Analysis (LISA) is presented. In this analysis both the paramagnetic and the diamagnetic lanthanide induced chemical shifts are normalised separately in contrast to previous techniques in which only the paramagnetic shifts were normalised. This procedure is used together with molecular mechanics (MMFF94) and ab initio (RHF/6-31G, RHF/6-311G** and B3LYP/6-311G**) calculations to investigate s - cis/s - trans isomerism in some ,,, -unsaturated aldehydes, ketones and esters. In tiglic aldehyde 1 and trans -cinnamaldehyde 4 the s - trans conformer predominates with energy differences ,E (s - cis,s - trans) of 1.64 and 1.76,kcal/mol. In methyl vinyl ketone 2 and trans -cinnamyl methyl ketone 5 the populations of the s - cis and s - trans isomers are almost equal (,E 0.24 and 0.0,kcal/mol) and in methyl crotonate 3 and methyl trans -cinnamate 6 the s - cis conformer is more stable (,E ,0.72 and ,0.41,kcal/mol). These results are in agreement with both the MMFF94 and ab initio calculated energies for the compounds except tiglic aldehyde 1 in which all the calculated values are too large and cinnamyl ketone 5. In this compound the ab initio calculations predict the s - cis form to be more stable than the s - trans in contrast to both the MM calculations and the observed result which give both forms of equal energy. Also in both the MM and ab initio calculations phenyl substitution in the ketone (2 vs. 5) considerably stabilises the s - cis form. This is not observed in practise. In phenyl acetate 7 the B3LYP calculations give two equally stable structures, one planar one non-planar. The MMFF94 and MP2 calculations and the LIS analysis support the existence of only the non -planar conformer in solution, which is also the conformation of phenyl acetate in the crystal. Copyright © 2006 John Wiley & Sons, Ltd. [source] Rock hyraces: a cause of San rock art deterioration?JOURNAL OF RAMAN SPECTROSCOPY, Issue 5 2007Linda C. Prinsloo Abstract San rock art sites are found throughout southern Africa, many showing signs of deterioration. In order to conserve this invaluable heritage, a long-term multidisciplinary project has been launched to monitor the rate of their deterioration and determine the various chemical processes that are possibly contributing to the decay. This study was initiated to establish if Raman spectroscopy could contribute to this project and since rock hyrax colonies live in close proximity to many of these archaeological sites, the possible influence of their metabolic products on the deterioration process was investigated. The precipitates from the urine of rock hyraces were analysed with Raman and Fourier-transform infrared (FTIR) spectroscopy. Where the urine was in contact with the faeces, the precipitates are a mixture of vaterite (a rare polymorph of CaCO3) and the hydrated salt calcium monohydrocalcite (also rarely found in nature). On areas where this contact is at a minimum the common and stable polymorph of CaCO3, calcite, is the main component. SEM micrographs and XRD analysis support the Raman and FTIR results. XRD, FTIR and preliminary GC-MS analyses of hyraceum, the fossilised mixture of faeces and urine, identified an inorganic phase (potassium chloride, with small concentrations of other salts, e.g. vaterite and weddelite) and an organic phase, which is a cocktail of various aromatic compounds, mainly amides, alcohols and acids. These compounds could contribute to the crystallisation of these rare carbonates, as well as other uncommon salts detected on the cave walls, such as syngenite. The presence of phosphates in the urine may further act as a stabilizing agent. Copyright © 2007 John Wiley & Sons, Ltd. [source] Sales by multi-product retailersMANAGERIAL AND DECISION ECONOMICS, Issue 4 2006Timothy J. Richards This paper examines the rationale underlying periodic price promotions, or sales, for perishable food products by supermarket retailers. Whereas previous studies explain sales in a single-product context as arising from informational, storage cost, or demand heterogeneity, this study focuses on the central role of retailers as multi-product sellers of complementary goods. By offering a larger number of discounted products within a particular category, retailers are able to attract a sufficient number of customers to offset the effect of lower margins on sale items by selling more high-margin items. The implications that emerge from the resulting mixed-strategy equilibrium are tested in a product-level, retail-scanner data set of fresh fruit sales. Hypotheses regarding the rationale and effectiveness of sales are tested by estimating econometric models that describe (1) the number of sales items per store, (2) the depth of a given sale, and (3) promotion effectiveness on store-level demand. The results of this econometric analysis support the hypothesis that the breadth and depth of price promotions are complementary marketing tools, thus explaining how EDLP and HI-LO store formats can exist in the same monopolistically competitive market equilibrium. Copyright © 2006 John Wiley & Sons, Ltd. [source] Ethnicity and Politics: Cohesion, Division and British JewsPOLITICAL STUDIES, Issue 4 2001Laurence A. Kotler-Berkowitz Structural, cultural, psychological and materialist theories support the proposition that political cohesion and division in ethnic groups are a function of ethnic cohesion and division generally. The proposition is applied to British Jews, and data from the first nationally representative survey of British Jews are employed to test an empirical hypothesis linking strong manifestations of ethnicity to Conservative partisanship. Results from multinomial logistic regression analysis support the hypothesis, and transformations to probabilities demonstrate the strong effect of ethnic divisions on party divisions. Comparisons are drawn between British Jews and other British ethnic minorities, and between British and American Jews. [source] Origin, diffusion and reproduction of the giant reed (Arundo donax L.): a promising weedy energy cropANNALS OF APPLIED BIOLOGY, Issue 2 2010C. Mariani Giant reed (Arundo donax) is a promising energy crop of the Mediterranean areas. It has long been associated with humans and has been cultivated in Asia, southern Europe, North Africa and the Middle East for thousands of years. It is a perennial herbaceous plant (Poaceae) found in grasslands and wetlands throughout a wide range of climatic zones. Amplified fragment length polymorphism (AFLP) analysis was used to assess genetic inter and intrarelationships between A. donax and other Arundo species. Furthermore, the development of the sexual apparatus was analysed to understand the basis of sterility in the accession examined. The dendrograms obtained by phenetic and cladistic analysis support the monophyletic origin of giant reed and suggest that it originated in Asia and began to spread into the Mediterranean without traces of hybridisation with the other Arundo species. In particular, samples from Mediterranean areas are characterisd by a lower gene diversity and incidence of rare AFLP fragments indicating that these populations are recent in origin. Moreover, results indicate the occurrence of post-meiotic alterations in the ovule and pollen developmental pathway. Thus, the success of giant reed can be attributed mainly to its rapid clonal spread by rhizome extension, flood dispersal of rhizome and culm fragments. [source] The Arabidopsis ClpB/Hsp100 family of proteins: chaperones for stress and chloroplast developmentTHE PLANT JOURNAL, Issue 1 2007Ung Lee Summary The Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) proteins are chaperones that act to remodel/disassemble protein complexes and/or aggregates using the energy of ATP. In plants, one of the best-studied proteins from this family is cytosolic ClpB1 (At1g74310), better known in Arabidopsis as AtHsp101, which is a heat shock protein required for acclimation to high temperatures. Three other ClpB homologues have been identified in the Arabidopsis genome (ClpB2, ClpB3 and ClpB4; At4g14670, At5g15450 and At2g25140). To define further the roles of these chaperones in plants we investigated their intracellular localization, evolutionary relationships, patterns of expression and the phenotypes of corresponding T-DNA insertion mutants. We first found that ClpB2 was misannotated; there is no functional ClpB/Hsp100 gene at this locus. By fusing the putative transit peptides of ClpB3 and ClpB4 with GFP, we showed that these proteins are targeted to the chloroplast and mitochondrion, respectively, and we therefore designated them as ClpB-p and ClpB-m. Phylogenetic analysis supports two major lineages of ClpB proteins in plants, an ,eukaryotic', cytosol/nuclear-localized group containing AtHsp101, and an organelle-localized lineage, containing both ClpB-p and ClpB-m. Although AtHsp101, ClpB-p and ClpB-m transcripts all accumulate dramatically at high temperatures, the T-DNA insertion mutants of ClpB-p and ClpB-m show no evidence of seedling heat stress phenotypes similar to those observed in AtHsp101 mutants. Strikingly, ClpB-p knockouts were seedling lethals, failing to accumulate chlorophyll or properly develop chloroplasts. Thus, in plants, the function of ClpB/Hsp100 proteins is not restricted to heat stress, but a specific member of the family provides housekeeping functions that are essential to chloroplast development. [source] | |||||||||||||||||||||||||||||||