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Identification
Kinds of Identification Terms modified by Identification Selected AbstractsENDOSCOPIC IDENTIFICATION OF HELICOBACTER PYLORI GASTRITIS IN CHILDRENDIGESTIVE ENDOSCOPY, Issue 2 2010Nao Hidaka Aim:, The role of endoscopic findings in deciding whether to biopsy the gastric mucosa of children remains unclear. The present study attempted, for the first time, to identify the value of endoscopic features for diagnosis of Helicobacter pylori (Hp) infection in children. Methods:, Hp status of consecutive children receiving esophagogastroduodenoscopy (EGD) was established by combinations of histology, 13C-urea breath test, and serum Hp immunoglobulin (Ig)G antibody. After routine EGD using a conventional endoscope, the presence of RAC (regular arrangement of collecting venules) was scored by close observation, which was carried out at two sites of lower corpus lesser curvature and upper corpus greater curvature. RAC-positive was defined as the presence of minute red points in a regular pattern. Antral nodularity was also scored as present/absent. Results:, Eighty-seven consecutive children (38 boys, median age 13 years, range 9,15 years) were evaluated; 25 (29%) were Hp positive. Antral nodularity was seen in 21 (84%) all of whom were Hp positive. The RAC-negative pattern based on examination of the upper and lower corpus yielded a sensitivity, specificity, positive predictive value and negative predictive value for the presence of Hp infection of 100%, 90%, 81%, and 100%. Magnifying endoscopy confirmed that the RAC pattern corresponded to collecting venules in the gastric corpus. Conclusions:, The absence of RAC pattern suggests that gastric mucosa biopsies should be taken despite otherwise normal-appearing gastric mucosa for the diagnosis of Hp infection in children. [source] IDENTIFICATION OF CLIMATE CONTROLS ON THE DYNAMIC BEHAVIOUR OF THE SUBARCTIC GLACIER SALAJEKNA, NORTHERN SCANDINAVIAGEOGRAFISKA ANNALER SERIES A: PHYSICAL GEOGRAPHY, Issue 1 2005PER KLINGBJER ABSTRACT. In this paper we describe the dynamic behaviour of Salajekna, a valley glacier, over the last 200 years using terrestrial observations, in situ measurements, remote sensing observations and glacier reconstructions. The response time of the glacier was calculated using analytical models and field measurements. We were subsequently able to attribute specific dynamic responses to climate trends in the available climate record. The glacier's historical maximum extension was reached around 1880,1910 and was the result of a more continental climate with multi-modal airflows in the late 18th and early 19th centuries. A transition to more maritime conditions in the mid-19th century resulted in a near-continuous 20th century retreat before the glacier adjusted to a near-steady state. [source] PCR-BASED TECHNIQUE FOR IDENTIFICATION AND DETECTION OF TRICHOGRAMMA SPP. (HYMENOPTERA: TRICHOGRAMMATIDAE) WITH SPECIFIC PRIMERSINSECT SCIENCE, Issue 3 2002LI Zheng-xi Abstract The rDNA-ITS2 regions of T. dendrolimi Matsumura and T. ostriniae Pang et Chen (Hymenoptera: Trichogrammatidae) were cloned and sequenced. The homologous sequences available in GenBank were retrieved and analyzed, and then specific primers were designed for molecular identification and detection of T. dendrolimi. Repeated screening showed that PCR amplification by the diagnostic primers enabled the differentiation of not only bulk samples and single adult (male or female), but also eggs and juveniles, which was not possible by conventional methods. The advantage of this system over morphology-based systems is that non-specialists are able to identify individuals or trace specimens efficiently. The derived molecular detection technique was then used to identify 12 specimens collected from different localities on the Chinese mainland; the results showed that this protocol could be applied to molecular monitoring of Trichogramma species in the field. Finally, 1132s of 6 geographical populations of T. dendrolimi (TdCHA, TDJL, TdXZ, TdKH, TdCZ and TdYBL) were cloned and sequenced. The multialignment analysis of intraspecific ITS2 sequences showed that the diagnostic primers have their own theoretical bases. [source] PARTIAL IDENTIFICATION OF COUNTERFACTUAL CHOICE PROBABILITIES,INTERNATIONAL ECONOMIC REVIEW, Issue 4 2007Charles F. Manski This article shows how to predict counterfactual discrete choice behavior when the presumed behavioral model partially identifies choice probabilities. The simple, general approach uses observable choice probabilities to partially infer the distribution of types in the population and then applies the results to predict behavior in unrealized choice settings. Two illustrative applications are given. One assumes only that persons have strict preferences. The other assumes strict preferences and utility functions that are linear in attribute bundles, with no restrictions on the shape of the distribution of preference parameters. [source] IDENTIFICATION OF PROCYANIDIN A2 AS POLYPHENOL OXIDASE SUBSTRATE IN PERICARP TISSUES OF LITCHI FRUITJOURNAL OF FOOD BIOCHEMISTRY, Issue 3 2007JIAN SUN ABSTRACT Postharvest browning of litchi fruit results in short shelf life and reduced commercial value. Experiments were conducted to separate, purify and identify polyphenol oxidase (PPO ) substrates that cause litchi fruit to brown. PPO and its substrate were extracted from the pericarp tissues of litchi fruit. The litchi PPO substrate was purified using polyamide column, silica gel column and Sephadex LH-20 column chromatography. The browning substrate was selected by a 0.5% FeCl3 solution and then identified using a partially purified litchi PPO. Analyses of ultraviolet spectrometry, nuclear magnetic resonance and electrospray ionization mass spectrometry indicated that the PPO substrate was procyanidin A2. The substrate can be oxidized to , -quinones by litchi PPO and then form brown-colored by-products, resulting in pericarp browning of harvested litchi fruit. [source] ISOLATION AND IDENTIFICATION OF A NOVEL ASPERGILLUS JAPONICUS JN19 PRODUCING ,-FRUCTOFURANOSIDASE AND CHARACTERIZATION OF THE ENZYMEJOURNAL OF FOOD BIOCHEMISTRY, Issue 6 2006LI-MEI WANG ABSTRACT A novel strain, Aspergillus sp. JN19, producing,-fructofuranosidase (FFase), was isolated from soil. According to the physiological and biochemical characteristics and its 18S rDNA gene sequence analysis, it was identified as Aspergillus japonicus. The optimal conditions for production of fructofuranosidase by A. japonicus JN-19 were investigated. The initial concentration of sucrose was 15 to 18%. Yeast extract was the best nitrogen source. K2HPO4 was effective in increasing enzyme production. The enzyme activity was increased to about 1.3 times by addition of 0.2% carboxymethylcellulose in the medium. The highest FFase activity was 55.42 U/mL at pH 5.5 and 30C, and production yield of fructooligosaccharides was 55.8%. Some characteristics of purified FFase were also studied. [source] IDENTIFICATION OF A MYOFIBRIL-BOUND SERINE PROTEINASE IN THE SKELETAL MUSCLE OF SILVER CARPJOURNAL OF FOOD BIOCHEMISTRY, Issue 5 2004MIN-JIE CAO ABSTRACT Myofibril-bound serine proteinase (MBSP) in the skeletal muscle of silver carp was characterized. Myosin heavy chain (MHC) degraded markedly when silver carp myofibril was incubated at 55,60C as shown by SDS-PAGE. Prolonged incubation of myofibrils also caused the degradation of other myofibrillar proteins such as ,-actinin, actin and tropomyosin to some degree. The results suggest the existence of an endogenous myofibril associated proteinase. Serine proteinase inhibitors (Pefabloc SC and Lima bean trypsin inhibitor) greatly suppressed the degradation of myosin heavy chain, while inhibitors for cysteine, metallo, and aspartic proteinases did not show any effect, indicating that the endogeneous proteinase is a myofibril-bound serine proteinase. [source] IDENTIFICATION OF CRITICAL CONTROL POINTS IN THE TWO SELECTED HACCP-CERTIFIED PRAWN PROCESSING UNITSJOURNAL OF FOOD QUALITY, Issue 2 2009PADMAJA R. JONNALAGADDA ABSTRACT A study on identification of critical control points in two export processing units indicated the contamination (cfu/g) of raw prawns with pathogenic fecal coliforms was <10,8 × 102 in Unit A, 1 × 101,1.3 × 102 in Unit B and 1 × 103,4 × 104 in pond to plate. The other microbial contaminants in Unit A and from Pond to Plate at different stages were Salmonella spp., 3 × 102,5.7 × 103 and 2 × 102,6 × 102; Staphylococcus aureus, 1.7 × 103,5.7 × 103 and 1 × 103 to 9 × 104; and Vibrio parahaemolyticus, 3 × 102,2 × 104 and 3 × 104,5 × 104, respectively. However, microbial contamination was significantly reduced to <10 after subjecting to household cooking process. PRACTICAL APPLICATIONS Implementation of hazard analysis critical control points (HACCPs) in the food industry is the most important approach to maintaining food safety. Identification of the critical control points in the HACCPs process will help the aquaculture industry to improve its production processes by applying good aquaculture and good hygienic practices at the production level. The study further provides clear insights into identifying critical control points both at the farm level and at the processing units that are important from farm to fork. [source] IDENTIFICATION OF IMPORTANT PRODUCTION VARIABLES AFFECTING HARD PRETZEL QUALITYJOURNAL OF FOOD QUALITY, Issue 3 2005N. YAO ABSTRACT The objective of this study was to determine the importance of raw material and processing variables that influence pretzel quality by utilizing a screening experiment design. Eleven variables were selected based on preliminary experiments, and a two-level-11-factor (211) fractional factorial experimental design was used to screen the variables. Several responses were measured for dough before and after extrusion, for half-baked and fully baked pretzels. These responses are important indicators of consistency and quality during pretzel processing. Results indicated that flour protein content, the amount of water added to make dough and dough mixing time were important variables influencing dough behavior. Caustic concentration affected brightness of half-baked pretzels but did not influence the color of the final product. Baking time was the most important factor for both half-baked product and final product qualities. The hardness of fully baked pretzels was influenced by baking time, temperature in baking oven zone 1, drying time and drying temperature. The color of final products was significantly influenced by baking time, while both baking time and drying temperature affected the moisture content of the final product. A key observation was that none of the raw material or dough processing parameters, within the range tested, influenced final pretzel quality as defined by pretzel moisture content, hardness or color. [source] IDENTIFICATION OF NONMEAT INGREDIENTS FOR INCREASING FAT HOLDING CAPACITY DURING HEATING OF GROUND BEEFJOURNAL OF FOOD QUALITY, Issue 4 2001E.T. ANDERSON ABSTRACT Eleven starch-, fiber-, and protein-based ingredients were evaluated for their fat holding capacity (FHC) in ground beef during heating. A test for FHC was developed where 20 g samples of 20% fat ground beef containing a 10% (wt/wt) addition of the selected ingredient were heated using low power microwave energy until internal temperatures were ,90C. Volumes of cooked-out water and fat were measured. FHC was determined based on the amount of fat released during cooking. High fiber ingredients retained more water and also had the highest FHC. Ground beef mixed with inner pea fiber retained the most fat, while the all-beef controls retained the least fat. Inner pea fiber appears to be a useful ingredient in the development of food products required to retain maximum amounts of fat during heating. [source] IDENTIFICATION OF SALT FEATURES IN SEISMIC DATAJOURNAL OF PETROLEUM GEOLOGY, Issue 4 2008M. K. Jenyon Deciding on the viability of a salt deposit as a possible site for storage-cavern solution mining requires detailed geological studies of the salt and of its confining formations. Borehole data alone can seldom deliver the information required for such a study. It can impart great detail of the subsurface but only at the actual borehole location in an area. The most practical approach to developing 3D information is to carry out a seismic survey tied in to one or more boreholes which have been logged geophysically Ideally, a high-resolution seismic survey is needed to study relatively shallow zones of the subsurface and resolve the top and base of fairly thin beds. However in some cases it is possible to use "reach-me-down" seismic data acquired previously during hydrocarbon exploration. Although these data were not designed to meet the requirements of salt deposit studies, they may still be adequate for the purpose. Their use will lead to quicker and lower-cost results than the commissioning of a full field seismic survey with concomitant processing, although in both cases a seismic interpretation would be required. [source] IDENTIFICATION AND ASSESSMENT OF DOMOIC ACID PRODUCTION IN OCEANIC PSEUDO-NITZSCHIA (BACILLARIOPHYCEAE) FROM IRON-LIMITED WATERS IN THE NORTHEAST SUBARCTIC PACIFIC,JOURNAL OF PHYCOLOGY, Issue 3 2008Adrian Marchetti We identified and investigated the potential toxicity of oceanic Pseudo-nitzschia species from Ocean Station Papa (OSP), located in a high-nitrate, low-chlorophyll (HNLC) region of the northeast (NE) subarctic Pacific Ocean. Despite their relatively low abundances in the indigenous phytoplankton assemblage, Pseudo-nitzschia species richness is high. The morphometric characteristics of five oceanic Pseudo-nitzschia isolates from at least four species are described using SEM and TEM. The species identified are Pseudo-nitzschia dolorosa Lundholm et Moestrup, P. granii Hasle, P. heimii Manguin, and P. cf. turgidula (Hust.) Hasle. Additional support for the taxonomic classifications based on frustule morphology is provided through the sequencing of the internal transcribed spacer 1 (ITS1) rDNA. Pseudo-nitzschia species identification was also assessed by the construction of ITS1 clone libraries and using automated ribosomal intergenic spacer analysis (ARISA) for environmental samples collected during the Subarctic Ecosystem Response to Iron Enrichment Study (SERIES), conducted in close proximity to OSP in July of 2002. Based on ITS1 sequences, the presence of P. granii, P. heimii, P. cf. turgidula, and at least five other putative, unidentified Pseudo-nitzschia ITS1 variants was confirmed within iron-enriched phytoplankton assemblages at OSP. None of the oceanic isolates produced detectable levels of particulate domoic acid (DA) when in prolonged stationary phase due to silicic acid starvation. The lack of detectable concentrations of DA suggests that either these strains produce very little or no toxin, or that the physiological conditions required to promote particulate DA production were not met and thus differ from their coastal, toxigenic congeners. [source] IDENTIFICATION OF CROSS-FERTILIZED CONCHOCELIS USING CLEAVED AMPLIFIED POLYMORPHIC SEQUENCE MARKERS IN CROSS-EXPERIMENTS OF PORPHYRA YEZOENSIS (BANGIALES, RHODOPHYTA),JOURNAL OF PHYCOLOGY, Issue 2 2008Eun-Jeong Park As a part of the construction of a Porphyra yezoensis Ueda genetic linkage map, we conducted intraspecific cross-experiments and subsequent screening of cross-fertilized conchocelis by cleaved amplified polymorphic sequence (CAPS) analysis. The cross-experiments were carried out between males of the wildtype (KGJ) and females of the recessive green mutant (TU-2) using two methods, controlled and random crosses. A total of 42 and 186 wildtype-colored conchocelis colonies were obtained from the former and latter experiments, respectively. Among those, 49 DNA samples (14% and 23% obtained from the former and latter crosses, respectively) showed biparental CAPS patterns in the two gene regions (EF - 1, open reading frame [ORF] region and V - ATPase). This study represents the first report in which the cross-fertilized conchocelis of P. yezoensis has been directly confirmed by molecular marker. The combination of the simple DNA extraction and CAPS analysis may be applicable in genetic studies of other macroalgae that are monoecious and/or grow slowly in laboratory culture. [source] IDENTIFICATION AND COMPARATIVE GENOMIC ANALYSIS OF SIGNALING AND REGULATORY COMPONENTS IN THE DIATOM THALASSIOSIRA PSEUDONANA,JOURNAL OF PHYCOLOGY, Issue 3 2007Anton Montsant Diatoms are unicellular brown algae that likely arose from the endocytobiosis of a red alga into a single-celled heterotroph and that constitute an algal class of major importance in phytoplankton communities around the globe. The first whole-genome sequence from a diatom species, Thalassiosira pseudonana Hasle et Heimdal, was recently reported, and features that are central to diatom physiology and ecology, such as silicon and nitrogen metabolism, iron uptake, and carbon concentration mechanisms, were described. Following this initial study, the basic cellular systems controlling cell signaling, gene expression, cytoskeletal structures, and response to stress have been cataloged in an attempt to obtain a global view of the molecular foundations that sustain such an ecologically successful group of organisms. Comparative analysis with several microbial, plant, and metazoan complete genome sequences allowed the identification of putative membrane receptors, signaling proteins, and other components of central interest to diatom ecophysiology and evolution. Thalassiosira pseudonana likely perceives light through a novel phytochrome and several cryptochrome photoreceptors; it may lack the conserved RHO small-GTPase subfamily of cell-polarity regulators, despite undergoing polarized cell-wall synthesis; and it possesses an unusually large number of heat-shock transcription factors, which may indicate the central importance of transcriptional responses to environmental stress. The availability of the complete gene repertoire will permit a detailed biochemical and genetic analysis of how diatoms prosper in aquatic environments and will contribute to the understanding of eukaryotic evolution. [source] RAPHIDOPHYCEAE [CHADEFAUD EX SILVA] SYSTEMATICS AND RAPID IDENTIFICATION: SEQUENCE ANALYSES AND REAL-TIME PCR ASSAYS,JOURNAL OF PHYCOLOGY, Issue 6 2006Holly A. Bowers Species within the class Raphidophyceae were associated with fish kill events in Japanese, European, Canadian, and U.S. coastal waters. Fish mortality was attributable to gill damage with exposure to reactive oxygen species (peroxide, superoxide, and hydroxide radicals), neurotoxins, physical clogging, and hemolytic substances. Morphological identification of these organisms in environmental water samples is difficult, particularly when fixatives are used. Because of this difficulty and the continued global emergence of these species in coastal estuarine waters, we initiated the development and validation of a suite of real-time polymerase chain reaction (PCR) assays. Sequencing was used to generate complete data sets for nuclear encoded small-subunit ribosomal RNA (SSU rRNA; 18S); internal transcribed spacers 1 and 2, 5.8S; and plastid encoded SSU rRNA (16S) for confirmed raphidophyte cultures from various geographic locations. Sequences for several Chattonella species (C. antiqua, C. marina, C. ovata, C. subsalsa, and C. verruculosa), Heterosigma akashiwo, and Fibrocapsa japonica were generated and used to design rapid and specific PCR assays for several species including C. verruculosa Hara et Chihara, C. subsalsa Biecheler, the complex comprised of C. marina Hara et Chihara, C. antiqua Ono and C. ovata, H. akashiwo Ono, and F. japonica Toriumi et Takano using appropriate loci. With this comprehensive data set, we were also able to perform phylogenetic analyses to determine the relationship between these species. [source] IDENTIFICATION OF BACTERIA ASSOCIATED WITH DINOFLAGELLATES (DINOPHYCEAE) ALEXANDRIUM SPP.JOURNAL OF PHYCOLOGY, Issue 2 2002FLUORESCENT IN SITU HYBRIDIZATION AND CONFOCAL MICROSCOPY, USING TYRAMIDE SIGNAL AMPLIFICATION In the marine environment, phytoplankton and bacterioplankton can be physically associated. Such association has recently been hypothesized to be involved in the toxicity of the dinoflagellate genus Alexandrium. However, the methods, which have been used so far to identify, localize, and quantify bacteria associated with phytoplankton, are either destructive, time consuming, or lack precision. In the present study we combined tyramide signal amplification,fluorescent in situ hybridization (TSA-FISH) with confocal microscopy to determine the physical association of dinoflagellate cells with bacteria. Dinoflagellate attached microflora was successfully identified with TSA-FISH, whereas FISH using monolabeled probes failed to detect bacteria, because of the dinoflagellate autofluorescence. Bacteria attached to entire dinoflagellates were further localized and distinguished from those attached to empty theca, by using calcofluor and DAPI, two fluorochromes that stain dinoflagellate theca and DNA, respectively. The contribution of specific bacterial taxa of attached microflora was assessed by double hybridization. Endocytoplasmic and endonuclear bacteria were successfully identified in the nonthecate dinoflagellate Gyrodinium instriatum. In contrast, intracellular bacteria were not observed in either toxic or nontoxic strains of Alexandrium spp. Finally, the method was successfully tested on natural phytoplankton assemblages, suggesting that this combination of techniques could prove a useful tool for the simultaneous identification, localization, and quantification of bacteria physically associated with dinoflagellates and more generally with phytoplankton. [source] IDENTIFICATION AND CLONING OF AMPLIFIED FRAGMENT LENGTH POLYMORPHISM MARKERS LINKED TO THE MATING TYPE LOCUS OF CHLAMYDOMONAS REINHARDTII (CHLOROPHYTA)JOURNAL OF PHYCOLOGY, Issue 3 2001Ralf Werner Amplified fragment length polymorphism (AFLP) markers have been widely used to generate molecular maps of plant species, including crops and cereals. We report on a useful protocol to identify AFLPs from Chlamydomonas reinhardtii Dangeard with digoxigenin labeled primers. Although Chlamydomonas has a small genome with a high GC content, we could detect polymorphic bands that led to the identification of several AFLP markers linked to the mating type locus of Chlamydomonas. Three of these markers were isolated from the gel, reamplified, and cloned. The clones were sequenced, and the insertion of the correct fragment was verified in AFLP gels and in Southern blots. One marker showed sequence identity to parts of the fus1 gene, known to be unique in the plus mating type. We also converted some of the AFLP markers into sequence tagged site markers, which allows a fast and convenient screening of progeny of crosses. This procedure will be a useful and fast alternative to the conventional generation of maps for the positional cloning of genes from Chlamydomonas. [source] rRNA PROBES FOR IDENTIFICATION AND CHARACTERIZATION OF MARINE PHYTOPLANKTON: THEIR POTENTIAL APPLICATION FOR DNA MICROCHIPSJOURNAL OF PHYCOLOGY, Issue 2001Article first published online: 24 SEP 200 Groben R., Lange, M. & Medlin, L. K. Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, D-27570 Bremerhaven, Germany A fast and reliable identification of nano- and picoplankton by light microscopy is often difficult because of the lack of usable morphological characteristics, whereas electron microscopy and biochemical methods are very time consuming. Identification of toxic algae also requires a great deal of taxonomic experrtise so that false positives are not recorded. One solution is to use taxon specific rRNA probes. For this purpose we designed probes for phytoplankton taxa, including toxic algae. These probes were either labelled with Digoxigenin (DIG) and used in DNA dot blot experiments, or labelled with fluorochromes and used in whole-cell hybridisations with fluorescence microscopy or flow cytometric detection. Specific probes could be used over a broad taxonomic range from higher groups (i.e. the class of dinoflagellates) to species level (i.e. Prorocentrum lima). These probes were be used in the EU MAST project AIMS for the development of an automated identification system for marine phytoplankton in combination with flow cytometry and artificial neural networks (ANNs), in the EU MAST DETAL and in the German national project (TEPS) for the development of an early warning system for harmful algal blooms. Results using Digoxigenin (DIG)-labelled probes on picoplankton samples taken from several water bodies indicate that hierarchial re-probing of spotted samples can be achieved and this suggests that probes can be adapted to DNA microchips. Preliminary field results for a hand-held DNA microchip reader are presented. This work was supported by the German BMBF TEPS 03F0161 and the EU AIMS MAS3-CT97-0080 and EU DETAL Q5RS-2000-30778 projects. [source] ACOUSTIC IDENTIFICATION OF NINE DELPHINID SPECIES IN THE EASTERN TROPICAL PACIFIC OCEANMARINE MAMMAL SCIENCE, Issue 1 2003Julie N. Oswald Abstract Acoustic methods may improve the ability to identify cetacean species during shipboard surveys. Whistles were recorded from nine odontocete species in the eastern tropical Pacific to determine how reliably these vocalizations can be classified to species based on simple spectrographic measurements. Twelve variables were measured from each whistle (n = 908). Parametric multivariate discriminant function analysis (DFA) correctly classified 41.1% of whistles to species. Non-parametric classification and regression tree (CART) analysis resulted in 51.4% correct classification. Striped dolphin whistles were most difficult to classify. Whistles of bottlenose dolphins, false killer whales, and pilot whales were most distinctive. Correct classification scores may be improved by adding prior probabilities that reflect species distribution to classification models, by measuring alternative whistle variables, using alternative classification techniques, and by localizing vocalizing dolphins when collecting data for classification models. [source] DIGITAL PHOTOGRAPHY IMPROVES EFFICIENCY OF INDIVIDUAL DOLPHIN IDENTIFICATIONMARINE MAMMAL SCIENCE, Issue 1 2003Tim M. Markowitz [source] PRACTICAL USE OF MULTIPLEX FLUORESCENT PCR FOR CETACEAN SEX IDENTIFICATIONMARINE MAMMAL SCIENCE, Issue 3 2001Hideaki Abe [source] PHOTOGRAPHIC IDENTIFICATION OF NORTHERN BOTTLENOSE WHALES (HYPEROODON AMPULLATUS): SOURCES OF HETEROGENEITY FROM NATURAL MARKSMARINE MAMMAL SCIENCE, Issue 1 2001Shannon Gowans Abstract The use of natural marks in capture-recapture studies can lead to unequal capture probabilities. This paper examined a catalog of northern bottlenose whale (Hyperoodon ampullatus) photographs from the Gully, Nova Scotia, to identify potential sources of heterogeneity. This information can be used to select appropriate individuals and photographs to include in analyses. Individual northern bottlenose whales were sufficiently marked to uniquely identify individuals (x,= 14.5 marks/individual; range 1-67), but not all mark types persisted over time. Reliable marks were defined as mark types that were not lost over the nine-yeat study period (notches, back indentation, and mottled patches). Individuals were considered reliably marked if they possessed at least one back indentation or mottled patch (located within one dorsal fin width, at the base of the dorsal fin) or a notch on the dorsal fin. Sixty-six percent (SE = 5%) of the population were reliably marked. Longterm analyses (months to years) should use only reliably marked individuals, and the results scaled to account for the rest of the population. Our results also showed that photographic quality affected an observer's ability to identify individuals. For this catalog, quantitative analysis indicated only photographs of Q , 4 (on a 6-point scale with 6 representing the highest quality) should be included in mark-recapture analyses sensitive to heterogeneity. [source] IDENTIFICATION OF MOLECULAR MARKERS IN DCIS RECURRENCEPATHOLOGY INTERNATIONAL, Issue 12 2001Provenzano E Background: DCIS represents preinvasive malignant change. With screening mammography DCIS has become a common entity. Its natural history is poorly understood and treatment remains controversial. Using a retrospective population based cohort, we have identified histological and molecular variables predictive of recurrence. Methods: All cases of DCIS reported in Victoria between 1988 and 1992 were entered into the Victorian Cancer Registry. In Situ and Small Cancer Register (ISSIBCR) and followed up annually regarding treatment, the event of recurrence and its nature and location. From this register a cohort of 66 DCIS lesions with subsequent recurrence as in situ or invasive disease were studied histologically, immunohistochemically and with CGH-based genetic analyses comparing them to a nested randomized control group of DCIS without recurrence matched for patient age and year of diagnosis. Recurrences have been analysed by the same techniques to compare them to the primary lesion. Results: 13 histological features were evaluated and lesion size, nuclear pleomorphism, cellular polarity, micropapillary architecture and central necrosis were all significant predictors of recurrence (p < 0.05). Immunohistochemistry showed p21 overexpression, bcl2 negativity and ERBB2 positivity to be markers of recurrence. In the case of ERBB2, positivity was a predictor of recurrence even when its overexpression was focal. Primary and recurrent DCIS lesions had similar morphological appearances, and grade of primary DCIS correlated with grade of subsequent invasive cancer. This morphological similarity was paralleled by similar protein expression and genomic changes in both in situ and invasive recurrences. Conclusion: We have identified histological and immunohistochemical markers of recurrence in DCIS, and shown similarities in morphology, protein expression and genetic changes between primary DCIS and its recurrence. [source] IDENTIFICATION AND DIFFERENTIATION OF OPAQUE CHINESE OVERGLAZE YELLOW ENAMELS BY RAMAN SPECTROSCOPY AND SUPPORTING TECHNIQUES*ARCHAEOMETRY, Issue 1 2010J. MIAO Using Raman spectroscopy, energy-dispersive X-ray fluorescence and X-ray diffraction, the Pb,Sn,Sb triple oxide yellow and lead,tin yellow have been identified on two pieces of cloisonné enamel (Falangcai) porcelains. Lead,tin yellow and lead antimonate yellow have been identified on famille rose porcelains manufactured before and after 1911, respectively. The replacement of the Pb,Sn,Sb triple oxide yellow by lead,tin yellow and that of the lead,tin yellow by lead antimonate yellow are discussed. [source] LEAD ISOTOPE ANALYSES OF BRONZE AGE COPPER-BASE ARTEFACTS FROM AL-MIDAMMAN, YEMEN: TOWARDS THE IDENTIFICATION OF AN INDIGENOUS METAL PRODUCTION AND EXCHANGE SYSTEM IN THE SOUTHERN RED SEA REGION,ARCHAEOMETRY, Issue 4 2009L. WEEKS The results of the lead isotope analysis (LIA) of 15 copper-base artefacts from the Bronze Age site of al-Midamman, Yemen, are reported. The LIA data suggest the existence of an indigenous Bronze Age metal production and exchange system centred on the southern Red Sea region, distinct from those in neighbouring regions of Arabia and the Levant. These preliminary results are highly significant for the archaeology of the region, suggesting that local prehistoric copper extraction sites have thus far gone unrecorded, and highlighting the need for systematic archaeometallurgical fieldwork programmes in the countries surrounding the southern Red Sea. [source] THE PROPERTIES AND IDENTIFICATION OF MARBLE FROM PROCONNESOS (MARMARA ISLAND, TURKEY): A NEW DATABASE INCLUDING ISOTOPIC, EPR AND PETROGRAPHIC DATA*ARCHAEOMETRY, Issue 5 2008D. ATTANASIO This paper reports an updated and enlarged archaeometric database of Proconnesos marbles with the aim of attaining more reliable inter- and intra-site identification. Quarry and artefact samples (n = 397) from 23 different quarrying areas were characterized using petrographic, isotopic and EPR results. The most distinct property of Proconnesos marbles is their extremely weak EPR intensity, associated with the low concentration of Mn2+impurities. This feature, supported by the contribution of other important isotopic and petrographic variables, forms the basis for the correct identification of Proconnesos marbles. Within the site the distribution of properties is relatively homogeneous; only limited intra-site discrimination is possible. All the experimental results, as well as the quarry samples are made available to other researchers willing to measure additional experimental properties, thus increasing the rate of within the site discrimination. Extensive survey has proved that, although about 10% of the samples exhibit maximum grain size below 1.0 mm, no locations exist where fine grained marbles could be intentionally quarried. The historical aspects of Proconnesos marble quarrying and usage are also discussed. [source] A MAS IMPLEMENTATION FOR SYSTEM IDENTIFICATION AND PROCESS CONTROLASIAN JOURNAL OF CONTROL, Issue 4 2006E. J. González ABSTRACT In this paper, a MAS for system identification and process control is presented. In particular, this MAS implements a self-tuning regulator (STR) scheme. It has adopted FIPA specifications because they have become a stronger standard in MAS development and they involve not only agent language specifications but also agent management and conversations. In this work, an Ontology Agent (OA) is included, using DAML + OIL as ontology language. The obtained results validate this approach in the implementation of well-known algorithms for control process. [source] IDENTIFICATION OF BLOOD PRESSURE CONTROL MECHANISMS BY POWER SPECTRAL ANALYSISCLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY, Issue 4 2007Harald M Stauss SUMMARY 1Blood pressure and organ perfusion are controlled by a variety of cardiovascular control systems, such as the baroreceptor reflex and the renin,angiotensin system (RAS), and by local vascular mechanisms, such as shear stress-induced release of nitric oxide (NO) from the endothelium and the myogenic vascular response. Deviations in arterial blood pressure from its set point activate these mechanisms in an attempt to restore blood pressure and/or secure organ perfusion. However, the response times at which different cardiovascular mechanisms operate differ considerably (e.g. blood pressure control by the RAS is slower than blood pressure control via the baroreceptor reflex). 2Owing to these different response times, some cardiovascular control systems affect blood pressure more rapidly and others more slowly. Thus, identifying the frequency components of blood pressure variability (BPV) by power spectral analysis can potentially provide important information on individual blood pressure control mechanisms. 3Evidence is presented that the RAS, catecholamines, endothelial-derived NO and myogenic vascular function affect BPV at very low frequencies (0.02,0.2 Hz) and that low-frequency (LF) BPV (0.2,0.6 Hz) is affected by sympathetic modulation of vascular tone and endothelial-derived NO in rats. In humans, LF BPV (0.075,0.15 Hz) is affected by sympathetic modulation of vascular tone and myogenic vascular function. The impact of the RAS and endothelial-derived NO on BPV in humans requires further investigation. 4In conclusion, power spectral analysis is a powerful diagnostic tool that allows identification of pathophysiological mechanisms contributing to cardiovascular diseases, such as hypertension, heart failure and stroke, because it can separate slow from fast cardiovascular control mechanisms. The limitation that some cardiovascular control mechanisms affect the same frequency components of BPV requires the combination of blood pressure spectral analysis with other techniques. [source] Augmenting real data with synthetic data: an application in assessing Radio-Isotope identification algorithms,QUALITY AND RELIABILITY ENGINEERING INTERNATIONAL, Issue 8 2009T. Burr Abstract The performance of Radio-Isotope IDentification (RIID) algorithms using gamma spectroscopy is increasingly becoming important. For example, sensors at locations that screen for illicit nuclear material rely on isotope identification to resolve innocent nuisance alarms arising from naturally occurring radioactive material. Recent data collections for RIID testing consist of repeat measurements for each of several scenarios to test RIID algorithms. Efficient allocation of measurement resources requires an appropriate number of repeats for each scenario. To help allocate measurement resources in such data collections for RIID algorithm testing, we consider using only a few real repeats per scenario. In order to reduce uncertainty in the estimated RIID algorithm performance for each scenario, the potential merit of augmenting these real repeats with realistic synthetic repeats is also considered. Our results suggest that for the scenarios and algorithms considered, approximately 10 real repeats augmented with simulated repeats will result in an estimate having comparable uncertainty to the estimate based on using 60 real repeats. Published in 2009 by John Wiley & Sons, Ltd. [source] Nonlinear Damping Identification in Precast Prestressed Reinforced Concrete BeamsCOMPUTER-AIDED CIVIL AND INFRASTRUCTURE ENGINEERING, Issue 8 2009P. Franchetti Integrated static and dynamic experiments were carried out on three precast PRC beam specimens. The static loading induced different levels of damage to the beams. At each damage level, impulsive loading was applied to the beams and the free vibration response was measured. The dynamic response data were processed using different methods including the multi-input multi-output (MIMO) curve fitting and the Hilbert transform techniques. A strong correlation is observed between the level of concrete damage (cracks) and the amount of nonlinear energy dissipation that can be modeled by means of quadratic damping. The nonlinear damping can be extracted from the free vibration response for each vibration mode. The proposed method is suited for quality control when manufacturing precast PRC members, and can be further extended for in situ detection of damage in concrete structures under ambient vibration. [source] | ||||||||||||||||||||||||||||||||||