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Hierarchical Organization (hierarchical + organization)
Selected AbstractsInfluence of Structural Principles on the Mechanics of a Biological Fiber-Based Composite Material with Hierarchical Organization: The Exoskeleton of the Lobster Homarus americanusADVANCED MATERIALS, Issue 4 2009Helge-Otto Fabritius Abstract The cuticle of the lobster Homarus americanus is a nanocomposite, such as most structural biological materials. It consists of a matrix of chitin-protein fibers associated with various amounts of crystalline and amorphous calcium carbonate in the rigid parts of the body, and is organized hierarchically at all length scales. One prominent design principle found in the hierarchical structure of such biological fibrous composite materials is the twisted plywood structure. In the lobster cuticle, it is formed by superimposing and gradually rotating planes of parallel aligned chitin-protein fibers. To adjust the mechanical properties to the requirements on the macroscopic level, the spatial arrangement and the grade of mineralization of the fibers can be modified. A second design principle of lobster cuticle is its honeycomb-like structure, generated by the well-developed pore canal system, whose twisted ribbon-shaped canals penetrate the cuticle perpendicular to its surface. Due to the hierarchical structure, the mechanical properties of the lobster cuticle have to be investigated at different length scales, which is essential for the understanding of the structure,mechanical function relations of mineralized tissues (e.g., potentially also bone and teeth). In order to investigate the influence of the structural principles on the mechanical properties on the macroscopic scale miniaturized tensile, compression, and shear tests were carried out to obtain integral mechanical data. Characterization of the microstructure included scanning electron microscopy (SEM) combined with energy dispersive X-ray (EDX) measurements. [source] Coordination-Driven Hierarchical Organization of ,-Conjugated Systems: From Molecular to Supramolecular ,-Stacked AssembliesCHEMISTRY - A EUROPEAN JOURNAL, Issue 24 2010Yishan Yao Dr. Abstract The reaction of U-shaped, bimetallic, CuI complexes, assembled from a heteroditopic pincer, with cyano-capped ,-conjugated linkers gives a straightforward access to ,-stacked metallocyclophanes in good yields. In these assemblies, the ,-walls have an almost face-to-face arrangement. The versatility of this rational supramolecular synthesis is demonstrated with the use of linkers that have nanoscale lengths (up to 27.7,Å), different chemical compositions (oligo(para -phenylenevinylene)s OPVs, oligo(phenylene)s, oligo(phenylethynylene)s), and alternative geometries (linear, angular). Linkers that incorporate an internal pyridyne moiety can also be employed. X-ray diffraction studies revealed that the metallocyclophanes based on linear linkers self-organize into infinite ,-stacked columns in the solid state with intermolecular distances of about 3.6,Å. This approach, based on coordination-driven self-assembly, provides a novel and rational strategy for the stacking of extended ,-systems in the solid state. [source] Causal mapping as a tool to mechanistically interpret phenomena in cell motility: Application to cortical oscillations in spreading cellsCYTOSKELETON, Issue 9 2006Gabriel E. Weinreb Abstract Biological processes that occur at the cellular level and consist of large numbers of interacting elements are highly nonlinear and generally involve multiple time and spatial scales. The quantitative description of these complex systems is of great importance but presents large challenges. We outline a new systems biology approach, causal mapping (CMAP), which is a coarse-grained biological network tool that permits description of causal interactions between the elements of the network and overall system dynamics. On one hand, the CMAP is an intermediate between experiments and physical modeling, describing major requisite elements, their interactions and paths of causality propagation. On the other hand, the CMAP is an independent tool to explore the hierarchical organization of cell and the role of uncertainties in the system. It appears to be a promising easy-to-use technique for cell biologists to systematically probe verbally formulated qualitative hypotheses. We apply the CMAP to study the phenomenon of contractility oscillations in spreading cells in which microtubules have been depolymerized. The precise mechanism by which these oscillations are governed by a complex mechano-chemical system is not known but the data observed in experiments can be described by a CMAP. The CMAP suggests that the source of the oscillations results from the opposing effects of Rho activation leading to a decreased level of myosin light chain phosphatase and a cyclic calcium influx caused by increased membrane tension and leading to a periodically enhanced activation of myosin light chain kinase. Cell Motil. Cytoskeleton 2006. © 2006 Wiley-Liss, Inc. [source] Leaf Processing by Wild Chimpanzees: Physically Defended Leaves Reveal Complex Manual SkillsETHOLOGY, Issue 8 2002Nadia Corp The manual processing of eight species of leaf was investigated in the M-group chimpanzees of Mahale Mountains National Park, Tanzania. Leaf species varied in the extent to which physical defences made consumption difficult. In all, 96 distinct techniques for leaf processing were identified, but two species with defended leaves (Ficus asperifolia and F. exasperata) required 2.5 as many techniques as did any of the six undefended species. Moreover, chimpanzees made more multiple leaf detachments, and made more subsequent modifications of the leaves, when dealing with the leaves of these two Ficus species, compared with the undefended leaf species. This greater complexity was associated with evidence of flexible, hierarchical organization of the process: iteration of modules consisting of several processing elements, facultative omission of modules, or substitutions of alternative modules. Comparison with data from mountain gorillas is made, and is consistent with similar cognitive architecture in the two species. We consider that, not only is hierarchical organization currently associated with mechanical difficulty in food processing, but that over evolutionary time-scales difficulties in food processing may have selected for cognitive advance. [source] Hierarchical processing of sound location and motion in the human brainstem and planum temporaleEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 1 2005Katrin Krumbholz Abstract Horizontal sound localization relies on the extraction of binaural acoustic cues by integration of the signals from the two ears at the level of the brainstem. The present experiment was aimed at detecting the sites of binaural integration in the human brainstem using functional magnetic resonance imaging and a binaural difference paradigm, in which the responses to binaural sounds were compared with the sum of the responses to the corresponding monaural sounds. The experiment also included a moving sound condition, which was contrasted against a spectrally and energetically matched stationary sound condition to assess which of the structures that are involved in general binaural processing are specifically specialized in motion processing. The binaural difference contrast revealed a substantial binaural response suppression in the inferior colliculus in the midbrain, the medial geniculate body in the thalamus and the primary auditory cortex. The effect appears to reflect an actual reduction of the underlying activity, probably brought about by binaural inhibition or refractoriness at the level of the superior olivary complex. Whereas all structures up to and including the primary auditory cortex were activated as strongly by the stationary as by the moving sounds, non-primary auditory fields in the planum temporale responded selectively to the moving sounds. These results suggest a hierarchical organization of auditory spatial processing in which the general analysis of binaural information begins as early as the brainstem, while the representation of dynamic binaural cues relies on non-primary auditory fields in the planum temporale. [source] Patterns of calcium-binding proteins support parallel and hierarchical organization of human auditory areasEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 2 2003Oriana Chiry Abstract The human primary auditory cortex (AI) is surrounded by several other auditory areas, which can be identified by cyto-, myelo- and chemoarchitectonic criteria. We report here on the pattern of calcium-binding protein immunoreactivity within these areas. The supratemporal regions of four normal human brains (eight hemispheres) were processed histologically, and serial sections were stained for parvalbumin, calretinin or calbindin. Each calcium-binding protein yielded a specific pattern of labelling, which differed between auditory areas. In AI, defined as area TC [see C. von Economo and L. Horn (1930) Z. Ges. Neurol. Psychiatr.,130, 678,757], parvalbumin labelling was dark in layer IV; several parvalbumin-positive multipolar neurons were distributed in layers III and IV. Calbindin yielded dark labelling in layers I,III and V; it revealed numerous multipolar and pyramidal neurons in layers II and III. Calretinin labelling was lighter than that of parvalbumin or calbindin in AI; calretinin-positive bipolar and bitufted neurons were present in supragranular layers. In non-primary auditory areas, the intensity of labelling tended to become progressively lighter while moving away from AI, with qualitative differences between the cytoarchitectonically defined areas. In analogy to non-human primates, our results suggest differences in intrinsic organization between auditory areas that are compatible with parallel and hierarchical processing of auditory information. [source] Time-dependent hierarchical organization of spatial working memory: a transcranial magnetic stimulation studyEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 9 2002Thomas Nyffeler The performance of memory-guided saccades with two different delays (3 and 30 s of memorization) was studied in seven healthy subjects. Double-pulse transcranial magnetic stimulation (dTMS) with an interstimulus interval of 100 ms was applied over the right dorsolateral prefrontal cortex (DLPFC) early (1 s after target presentation) and late (28 s after target presentation). Early stimulation significantly increased in both delays the percentage of error in amplitude (PEA) of contralateral memory-guided saccades compared to the control experiment without stimulation. dTMS applied late in the delay had no significant effect on PEA. Furthermore, we found a significantly smaller effect of early stimulation in the long-delay paradigm. These results suggest a time-dependent hierarchical organization of the spatial working memory with a functional dominance of DLPFC during the early memorization, independent from the memorization delay. For a long memorization delay, however, working memory seems to have an additional, DLPFC-independent component. [source] Mussel-Inspired Polydopamine Coating as a Universal Route to Hydroxyapatite CrystallizationADVANCED FUNCTIONAL MATERIALS, Issue 13 2010Jungki Ryu Abstract Bone tissue is a complex biocomposite material with a variety of organic (e.g., proteins, cells) and inorganic (e.g., hydroxyapatite crystals) components hierarchically organized with nano/microscale precision. Based on the understanding of such hierarchical organization of bone tissue and its unique mechanical properties, efforts are being made to mimic these organic,inorganic hybrid biocomposites. A key factor for the successful designing of complex, hybrid biomaterials is the facilitation and control of adhesion at the interfaces, as many current synthetic biomaterials are inert, lacking interfacial bioactivity. In this regard, researchers have focused on controlling the interface by surface modifications, but the development of a simple, unified way to biofunctionalize diverse organic and inorganic materials remains a critical challenge. Here, a universal biomineralization route, called polydopamine-assisted hydroxyapatite formation (pHAF), that can be applied to virtually any type and morphology of scaffold materials is demonstrated. Inspired by the adhesion mechanism of mussels, the pHAF method can readily integrate hydroxyapatites on ceramics, noble metals, semiconductors, and synthetic polymers, irrespective of their size and morphology (e.g., porosity and shape). Surface-anchored catecholamine moieties in polydopamine enriches the interface with calcium ions, facilitating the formation of hydroxyapatite crystals that are aligned to the c -axes, parallel to the polydopamine layer as observed in natural hydroxyapatites in mineralized tissues. This universal surface biomineralization can be an innovative foundation for future tissue engineering. [source] A framework for developing intelligent real-time scheduling systemsHUMAN FACTORS AND ERGONOMICS IN MANUFACTURING & SERVICE INDUSTRIES, Issue 4 2006Ronald F. McPherson The authors describe the adaptation of a hierarchical management-control framework to the design of intelligent real-time scheduling systems. Originally developed for the analysis of organizations where dynamics are governed solely by the reactions of human decision makers, the control framework provides insights concerning design requirements for decision systems that react in human-like fashion within narrow domains of expertise. The framework emphasizes the dynamic balance of autonomy and decentralization required to achieve planned goals within a hierarchical organization. Applying this framework, design specifications for knowledge-based scheduling systems are developed, which are responsive to organizational dynamics as required for schedule control and replanning. An illustration is given that addresses kitchen scheduling in full-service restaurants. © 2006 Wiley Periodicals, Inc. Hum Factors Man 16: 385,408, 2006. [source] Cracking risk of partially saturated porous media,Part II: Application to drying shrinkageINTERNATIONAL JOURNAL FOR NUMERICAL AND ANALYTICAL METHODS IN GEOMECHANICS, Issue 2 2010Bernhard Pichler Abstract Drying of deformable porous media results in their shrinkage, and it may cause cracking provided that shrinkage deformations are hindered by kinematic constraints. Herein, we focus on slow drying of an initially water-saturated sample of a microheterogeneous poroelastic material damaged by parallel mesocracks. The cracking risk is analyzed by means of the thermodynamics-based microporoelasticity model described in the companion paper (Part I), which is extended toward consideration of the hierarchical organization of cracked argillite. Drying of a material sample is studied in a framework where macrodisplacements in direction of the crack normal are blocked, while elsewise macrostress-free boundary conditions prevail. The model implies that the opening/closure behavior of the cracks is governed by an effective pressure, in which the average crack (under)pressure, making the crack opening smaller, competes with the average micropore (under)pressure that makes the crack opening larger. The driving force for crack propagation is a quadratic function of this effective pressure. The model proposes that if drying shrinkage deformations are hindered by kinematic constraints, onset of cracking becomes possible once air entry into the cracks is observed. Copyright © 2009 John Wiley & Sons, Ltd. [source] Hierarchy Selection, Position Control, and Orientation of Growing Mesostructures by Patterned Surfaces,ADVANCED MATERIALS, Issue 8 2006Spontaneous hierarchical organization of silica by means of a patterned surface is described, in which the usual coexistence of energetically similar structures is overcome. A patterned substrate is shown to lead to pixel-like, simultaneous growth of a hierarchal assembly involving four structural levels. The individual pixels belong to a new class of circularly organized solids (see figure and cover). [source] Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: Large-scale organization and robustnessPROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 2 2006Dong Li Abstract High-throughput screens have begun to reveal protein interaction networks in several organisms. To understand the general properties of these protein interaction networks, a systematic analysis of topological structure and robustness was performed on the protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster. It shows that the three protein interaction networks have a scale-free and high-degree clustering nature as the consequence of their hierarchical organization. It also shows that they have the small-world property with similar diameter at 4,5. Evaluation of the consequences of random removal of both proteins and interactions from the protein interaction networks suggests their high degree of robustness. Simulation of a protein's removal shows that the protein interaction network's error tolerance is accompanied by attack vulnerability. These fundamental analyses of the networks might serve as a starting point for further exploring complex biological networks and the coming research of "systems biology". [source] Biodiversity conservation in Mediterranean and Black Sea lagoons: a trait-oriented approach to benthic invertebrate guildsAQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue S1 2008A. Basset Abstract 1. The extent to which conservation of biodiversity enforces the protection of ecosystem functioning, goods and services is a key issue in conservation ecology. 2. In order to address this conservation issue, this work focused on community organization, linking community structure, as described both in taxonomic and functional terms, to community functioning and ecosystem processes. 3. Body size is an individual functional trait that is deterministically related to components of ecosystem functioning such as population dynamics and energy flow, and which determines components of community structure. Since body size is an individual trait that reflects numerous factors, it is also exposed to trait selection and the niche filtering underlying the community. 4. An analysis of the relevance of body size to community organization in transitional water ecosystems in the eastern Mediterranean and Black Sea regions is presented, based on field research conducted on a sample of 15 transitional water ecosystems. 5. 250 taxa were identified, clumped in five orders of magnitude of body size. All body size patterns showed triangular distributions with an optimal size range of 0.13 mg to 1.0 mg individual body mass. 6. Deterministic components of size structure were emphasized and a hierarchical organization with dominance of large sizes was demonstrated by the slopes of the body size-abundance distributions, consistently larger than the EER threshold (b=,0.75), and by the direct relationship of energy use to body size for most of the body size range. 7. Consistent variations of body size-related descriptors were observed on three main gradients of environmental stress: eutrophication, confinement and metal pollution. 8. The results support the relevance of constraints imposed by individual body size on community organization in transitional water ecosystems and the adequacy of size patterns as an indicator for ecological conservation of these fragile ecosystems. Copyright © 2008 John Wiley & Sons, Ltd. [source] Structural Diversity in the Self-Assembly of Pseudopeptidic MacrocyclesCHEMISTRY - A EUROPEAN JOURNAL, Issue 4 2010Ignacio Alfonso Dr. Abstract The self-assembling abilities of several pseudopeptidic macrocycles have been thoroughly studied both in the solid (SEM, TEM, FTIR) and in solution (NMR, UV, CD, FTIR) states. Detailed microscopy revealed large differences in the morphology of the self-assembling micro/nanostructures depending on the macrocyclic chemical structures. Self-assembly was triggered by the presence of additional methylene groups or by changing from para to meta geometry of the aromatic phenylene backbone moiety. More interestingly, the nature of the side chain also plays a fundamental role in some of the obtained nanostructures, thus producing structures from long fibers to hollow spheres. These nanostructures were obtained in different solvents and on different surfaces, thus implying that the chemical information for the self-assembly is contained in the molecular structure. Dilution NMR studies (chemical shift and self-diffusion rates) suggest the formation of incipient aggregates in solution by a combination of hydrogen-bonding and ,,, interactions, thus implicating amide and aryl groups, respectively. Electronic spectroscopy further supports the ,,, interactions because the compounds that lead to fibers show large hypochromic shifts in the UV spectra. Moreover, the fiber-forming macrocycles also showed a more intense CD signature. The hydrogen-bonding interactions within the nanostructures were also characterized by attenuated total-reflectance FTIR spectroscopy, which allowed us to monitor the complete transition from the solution to the dried nanostructure. Overall, we concluded that the self-assembly of this family of pseudopeptidic macrocycles is dictated by a synergic action of hydrogen-bonding and ,,, interactions. The feasibility and geometrical disposition of these interactions finally render a hierarchical organization, which has been rationalized with a proposal of a model. The understanding of the process at the molecular level has allowed us to prepare hybrid soft materials. [source] Photoresponsive Self-Assembly and Self-Organization of Hydrogen-Bonded Supramolecular TapesCHEMISTRY - A EUROPEAN JOURNAL, Issue 15 2006Shiki Yagai Dr. Abstract Self-assembling building blocks that are readily functionalizable and capable of achieving programmed hierarchical organization have enabled us to create various functional nanomaterials. We have previously demonstrated that N,N, -disubstituted 4,6-diaminopyrimidin-2(1,H)-one (DAP), a guanine,cytosine hybridized molecule, is a versatile building block for the creation of tapelike supramolecular polymer species in solution. In the current study, DAP was functionalized with azobenzene side chains. 1H NMR, UV/Vis, and dynamic light scattering studies confirmed the presence of nanometer-scale tapelike supramolecular polymers in alkane solvents at micromolar regimes. At higher concentrations (millimolar regimes), the supramolecular polymers hierarchically organized into lamellar superstructures to form organogels, as shown by X-ray diffraction and polarized optical microscopy. Remarkably, the azobenzene side chains are photoisomerizable even in the supramolecular polymers, owing to their loosely packed state supported by the rigid hydrogen-bonded scaffold, enabling us to establish photocontrollable supramolecular polymerization and higher order organization of the tapelike supramolecular polymers into lamellar superstructures. [source] Organizational learning communities and the dark side of the learning organizationNEW DIRECTIONS FOR ADULT & CONTINUING EDUCATION, Issue 95 2002Phillip H. Owenby This chapter explores some aspects of learning communities in organizations, with a special focus on manager-employee power relationships and the challenges of establishing learning organizations in traditional hierarchical organizations. [source] Hierarchical structures of dendritic polymersPOLYMER INTERNATIONAL, Issue 2 2010Masaki Ujihara Abstract Dendritic polymers' highly specific and three-dimensional architectures set them apart from linear and slightly branched polymers. Their unique properties also allow them to form hierarchical organizations, which can be classified as planar or non-planar. The preparation of a planar hierarchy consisting of dendritic polymers can be achieved by conventional techniques of adsorption or Langmuir monolayer and Langmuir,Blodgett accumulation, and the resultant hierarchy is well ordered. Non-planar hierarchies are built on non-planar scaffolds, for example by self-assembly. In this mini-review, the practical/potential applications of dendritic polymers such as for electrical or optical devices, sensing systems, or medical diagnosis are also reviewed in association with their structures. Copyright © 2009 Society of Chemical Industry [source] | |||||||||||||||||||