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Heterozygote Deficiency (heterozygote + deficiency)
Selected AbstractsSex ratio, reproductive mode and genetic diversity in Triops cancriformisFRESHWATER BIOLOGY, Issue 7 2009THORID ZIEROLD Summary 1. Aquatic invertebrates display a wide array of alternative reproductive modes from apomixis to hermaphroditism and cyclical parthenogenesis. These have important effects on genetic diversity and population structure. Populations of the ,living fossil'Triops cancriformis display a range of sex ratios, and various reproductive modes are thought to underlie this variation. Using sex ratio information and histological analyses European populations have been inferred to be gonochoric (with separate males and females), selfing hermaphroditic and androdioecious, a rare reproductive mode in which selfing hermaphrodites coexist with variable proportions of males. In addition, some populations have been described as meiotic parthenogens. 2. Here we use population genetic analysis using microsatellite loci in populations with a range of sex ratios including a gonochoric population, and marker segregation patterns in heterozygote individuals reared in isolation, to clarify the reproductive mode in this species. 3. Our data show that populations in general have very low levels of genetic diversity. Non-gonochoric populations show lower genetic diversity, more heterozygote deficiencies, higher inbreeding coefficients and stronger linkage disequilibria than the gonochoric population. The maintenance of some heterozygosity in populations is consistent with some male influence in T. cancriformis populations, as would be expected from an androdioecious reproductive system. Results of marker segregation in eggs produced in isolation from non-gonochoric populations indicate that meiosis occurs and are consistent with two reproductive modes: selfing hermaphroditism and a type of ameiotic parthenogenesis. 4. Overall, our data indicate that androdioecy and selfing hermaphroditism are the most likely reproductive modes of non-gonochoric European Triops populations. Triops populations are strongly structured, suggesting high genetic drift and low levels of gene flow. [source] Population genetic structure of three freshwater mussel (Unionidae) species within a small stream system: significant variation at local spatial scalesFRESHWATER BIOLOGY, Issue 8 2007DAVID J. BERG Summary 1. Unionid mussels are highly threatened, but little is known about genetic structure in populations of these organisms. We used allozyme electrophoresis to examine partitioning of genetic variation in three locally abundant and widely distributed species of mussels from a catchment in Ohio. 2. Within-population variation was similar to that previously reported for freshwater mussels, but genotype frequencies exhibited heterozygote deficiencies in many instances. All three species exhibited significant among-population variation. Evidence of isolation-by-distance was found in Elliptio dilatata and Ptychobranchus fasciolaris, while Lampsilis siliquoidea showed no geographical pattern of among-population variation. 3. Our results suggest that the isolating effects of genetic drift were greater in L. siliquoidea than in the other species. Differentiation of populations occurred at a much smaller spatial scale than has previously been found in freshwater mussels. Differences among species may reflect differences in the dispersal abilities of fishes that serve as hosts for the glochidia larvae of mussels. 4. Based on our results, we hypothesise that species of mussels that are common to large rivers exhibit relatively large amounts of within-population genetic variation and little differentiation over large geographical distances. Conversely, species typical of small streams show lower within-population genetic variation and populations will be more isolated. If this hypothesis can be supported, it may prove useful in the design of conservation strategies that maintain the genetic structure of target species. [source] Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum brightwelliiMOLECULAR ECOLOGY, Issue 6 2005TATIANA A. RYNEARSON Abstract Maintenance of genetic diversity in eukaryotic microbes reflects a synergism between reproductive mode (asexual vs. sexual) and environmental conditions. We determined clonal diversity in field samples of the planktonic marine diatom, Ditylum brightwellii, during a bloom, when cell number increased by seven-fold because of rapid asexual division. The genotypes at three microsatellite loci were determined for 607 individual cell lines isolated during the 11 days of sampling. Genetic diversity remained high during the bloom and 87% of the cells sampled each day were genetically distinct. Sixty-nine clonal lineages were sampled two or more times during the bloom, and two clones were sampled seven times. Based on the frequency of resampled clonal lineages, capture,recapture statistics were used to determine that at least 2400 genetically distinct clonal lineages comprised the bloom population. No significant differences in microsatellite allele frequencies were observed among daily samples indicating that the bloom was comprised of a single population. No sexual stages were observed, although linkage equilibrium at two loci, high levels of allelic and genotypic diversity, and heterozygote deficiencies were all indicative of past sexual reproduction events. At the height of the bloom, a windstorm diluted cell numbers by 51% and coincided with a change in the frequency distribution of some resampled lineages. The extensive clonal diversity generated through past sexual reproduction events coupled with frequent environmental changes appear to prevent individual clonal lineages from becoming numerically dominant, maintaining genetic diversity and the adaptive potential of the population. [source] Identification and characterization of eight microsatellite loci in Aster amellus L. (Asteraceae)MOLECULAR ECOLOGY RESOURCES, Issue 2 2007R. MAYOR Abstract Eight polymorphic microsatellites were developed in the perennial herbaceous Aster amellus L. (Asteraceae) and characterized on three populations from France and Switzerland. The number of alleles ranged between four and 30 depending on the locus, and the mean number of effective alleles was 5.8. The average gene diversity equalled 0.744 (range: 0.419,0.957) and the overall differentiation was found significant (, = 0.092, P < 0.01). Three loci displayed significant heterozygote deficiencies, which might indicate the presence of null alleles. Amplifications were detected on eight loci in Aster alpinus L. [source] Development and characterization of novel tetra- and dinucleotide microsatellite markers for the French Polynesia black-lipped pearl oyster, Pinctada margaritiferaMOLECULAR ECOLOGY RESOURCES, Issue 1 2006C. M. HERBINGER Abstract Ten microsatellite loci were developed for the black-lipped pearl oyster Pinctada margaritifera with a magnetic bead enrichment protocol. These tetra- and dinucleotide markers were polymorphic, with 10 to 43 alleles observed in 97 individuals from two Tuamotu atoll populations. Most loci revealed significant genic differentiation between the two populations and also exhibited some degree of heterozygote deficiencies, probably due to the presence of null alleles. These loci should be very useful to describe genetic structure, genetic variability and reproductive success in the various aquaculture and wild populations of pearl oyster in French Polynesia. [source] Microgeographic genetic structure and intraspecific parasitism in the ant Leptothorax nylanderiECOLOGICAL ENTOMOLOGY, Issue 5 2001S. Foitzik Summary 1. Genetic colony structure of the small central European ant Leptothorax nylanderi is affected strongly by ecological constraints such as nest site availability and intraspecific social parasitism. 2. Although L. nylanderi is generally monogynous and monandrous, more than a quarter of all nests collected in a dense population near Würzburg, Germany, contained several matrilines. As shown by microsatellite analysis, the average nest-mate relatedness in these nests was 0.20. Genetically heterogeneous nests arise from nest take-over by alien colonies or founding queens, a result of severe competition for nest sites. 3. In summer, more than one-third of all colonies inhabited several nest sites at a time. Polydomy appears to be rather limited, with two or three nests belonging to a single polydomous colony. 4. Queens appear to dominate male production; only a small fraction (8%) of males was definitively not progeny of the queen present but might have been worker progeny or offspring of another queen. 5. Strong evidence for heterozygote deficiency was found and a total of nine diploid males was discovered in two colonies. These findings suggest deviation from random mating through small, localised nuptial flights. [source] Reproductive modes and genetic polymorphism in the tardigrade Richtersius coronifer (Eutardigrada, Macrobiotidae)INVERTEBRATE BIOLOGY, Issue 1 2003Lorena Rebecchi Abstract. Allozymes were assessed by starch gel electrophoresis in 3 populations of a eutardigrade, Richtersius coronifer, with different reproductive modes. One population from Italy (with 2 sub-populations) was amphimictic and 2 populations (1 from Italy and 1 from Sweden) were parthenogenetic. All populations, irrespective of their reproductive mode, were diploid with the same chromosome number (2n=12) and had bivalents in the oocytes. Of the 14 loci analyzed, only 3 were polymorphic. The amphimictic population had a higher degree of genetic variability (mean heterozygosity >0.25) than the parthenogenetic populations (mean heterozygosity of the 2 populations <0.01). In all female populations, allele frequencies at all 3 loci deviated from Hardy-Weinberg equilibria due to heterozygote deficiency. These results support a hypothesis of automictic parthenogenesis in R. coronifer. [source] Genetic structure of the European polecat (Mustela putorius) and its implication for conservation strategiesJOURNAL OF ZOOLOGY, Issue 1 2006C. Pertoldi Abstract During the last century, the European polecat Mustela putorius populations in most of Europe declined and survived in fragmented patches, because of habitat alterations and direct persecution. To assess the genetic consequences of the demographic decline and to describe the spatial pattern of genetic diversity, 250 polecats sampled at seven localities from five European countries , Poland, Denmark (southern Denmark and northern Denmark), Spain, Belgium (eastern and western) and the Netherlands , were screened by means of nine microsatellite loci. Genetic diversity estimated by mean expected heterozygosity (HE) and allelic richness (AR) were moderately high within populations [range: 0.50 (northern Denmark) ,HE,0.64 (Poland) and 1.33,AR,7.80] as compared with other carnivores and mustelids. Bottleneck tests suggested that polecat populations in southern Denmark and Poland have declined recently and populations from northern Denmark and the Netherlands have expanded recently, whereas the remaining populations did not show any sign of demographic change. Recent demographic changes could suggest that some of the populations are still not in equilibrium, which could partly explain the relatively high genetic variability observed in polecat populations despite the drastic decline in population size observed in several European countries. A significant heterozygote deficiency [FIS=0.19; 0.01,95% confidence interval (CI),0.32] suggests substructuring within the total European sample. Partitioning of the genetic variation among sampling locations (FST=0.14; 0.06,95% CI,0.23) and pairwise FST between localities (range: 0.01,FST,0.37) without any correlation with the geographic distances between localities were found, suggesting a recent divergence and a restriction of gene flow between populations and the action of genetic drift. An assignment test showed that the Polish and the northern Danish populations were the most unique, whereas the other populations were partially admixed. Factorial component analysis tests indicate a subdivision of the total sample into two distinct groups: one including the samples from Poland and the two Danish localities and the second group comprising the remaining localities investigated. The observed pattern of genetic differentiation is suggested to be due to two main routes of recolonization after the last glacial period. To compare the results obtained with microsatellite data, the most variable region of the mitochondrial DNA (d-loop) was sequenced and different phylogenetic reconstructions and genetic diversity analyses based on nucleotide (,) and haplotype diversity (h) measures within populations were performed using a subsample of populations. The lack of well-defined geographical structure, as well as the reduced level of mitochondrial DNA variability (,: 0.00274±0.00038; h: 0.876±0.028) that was found, has been previously reported in several studies on different carnivores and supports the hypothesis of post-glacial recolonization from southern or eastern refugees of Europe as suggested by the microsatellite data. Implications for conservation strategies of the polecat at the European level are discussed. [source] Genetic variability and population structure of dorada (Brycon moorei sinuensis Dahl) in the Sinú River, Córdoba, ColombiaLAKES & RESERVOIRS: RESEARCH AND MANAGEMENT, Issue 1 2006Liliana López Abstract Six microsatellite loci, isolated for Piaractus mesopotamicus (Characidae, Serrasalminae) were used to evaluate the genetic variability of the dorada (Brycon moorei sinuensis, Characidae, Bryconinae) population in the Sinú River, Córdoba, Colombia, and to facilitate management recommendations for this species. The six loci were polymorphic, with an average of 9.25 alleles for dimeric loci (Pme2, Pme4, Pme5 and Pme20), and five alleles for trimeric loci. Tests for linkage disequilibrium were used to determine that the six loci had an independent distribution. The observed heterozygosities were lower than the expected ones for all loci, and the population was not in Hardy,Weinberg equilibrium because of heterozygote deficiency. F -statistics indicated inbreeding and a low population substructure. The homogeneity of the population was confirmed by high values of genetic flux and an agglomerated representation of the individuals, based on factor correspondence analysis. Recent bottlenecks were detected for three sample sites under the assumption of an infinite allele mutation model. Proposals for the management of the dorada population are made and validated with a genetic simulation. [source] Genetic variation and relationships among eight Indian riverine buffalo breedsMOLECULAR ECOLOGY, Issue 3 2006SATISH KUMAR Abstract Twenty-seven microsatellite loci were used to define genetic variation and relationships among eight Indian riverine buffalo breeds. The total number of alleles ranged from 166 in the Toda breed to 194 each in the Mehsana and the Murrah. Significant departures from the Hardy,Weinberg equilibrium were observed for 26 locus-breed combinations due to heterozygote deficiency. Breed differentiation was analysed by estimation of FST index (values ranging from 0.75% to 6.00%) for various breed combinations. The neighbour-joining tree constructed from chord distances, multidimensional scaling (MDS) display of FST values and Bayesian clustering approach consistently identified the Toda, Jaffarabadi, and Pandharpuri breeds as one lineage each, and the Bhadawari, Nagpuri, Surati, Mehsana and Murrah breeds as admixture. Analysis of molecular variance refuted the earlier classification of these breeds proposed on the basis of morphological and geographical parameters. The Toda buffaloes, reared by a tribe of the same name, represent an endangered breed from the Nilgiri hills in South India. Divergence time of the Toda buffaloes from the other main breeds, calculated from Nei's standard genetic distances based on genotyping data on seven breeds and 20 microsatellite loci, suggested separation of this breed approximately 1800,2700 years ago. The results of the present study will be useful for development of rational breeding and conservation strategies for Indian buffaloes. [source] Patterns of genetic variation do not correlate with geographical distance in the reef-building coral Pocillopora meandrina in the South PacificMOLECULAR ECOLOGY, Issue 7 2005H. MAGALON Abstract Dispersal may be a critical factor in the ability of reef-building corals to recover after major disturbances. We studied patterns of geographical structure using four microsatellite markers in seven South Pacific populations of Pocillopora meandrina, a major coral species from Polynesia. Variation within populations showed evidence of heterozygote deficiency. Genetic differentiation between populations was detected at a large scale (2000 km) between the Tonga and the Society Islands. Within the Society Islands, four of the five studied populations from Bora Bora, Moorea and Tahiti were not significantly different from each other. Unexpectedly, one of the three populations surveyed in Moorea was genetically different from the other two populations of this island (that were 5 and 10 km apart), and from the populations of the other two surveyed islands in this archipelago. We cannot rule out the possibility that this pattern is an equilibrium state, whereby short-range dispersal is locally more differentiating than long-range dispersal, as has been suggested by similar patterns reported in other studies. An alternative explanation that is globally consistent with all observations is that this is the signature of a large-scale destruction event, as for instance a bleaching event, followed by the recent restoration of populations by new colonists. [source] Isolation and characterization of microsatellite loci in the Alpine leaf beetle, Oreina elongataMOLECULAR ECOLOGY RESOURCES, Issue 2 2005N. MARGRAF Abstract For a study of local adaptations in the Alpine leaf beetle, Oreina elongata, we developed six microsatellite loci and screened them in 305 individuals from 13 populations. All markers were polymorphic with three to 15 alleles per locus. Average observed and expected heterozygosity values were 0.14 and 0.62, respectively. Four markers showed heterozygote deficiency and deviated significantly from Hardy,Weinberg expectations, indicating the presence of null alleles. [source] Isolation and characterization of microsatellites in the bryozoan Crisia denticulataMOLECULAR ECOLOGY RESOURCES, Issue 4 2001S. F. Craig Abstract Cyclostomata bryozoa are thought to reproduce via polyembryony, a clonal replication of a fertilized egg. To test this hypothesis and to assess the impact of their reproductive strategy on the structure of populations, we isolated microsatellite markers in Crisia denticulata (Cyclostomata, Stenolemata), using an initial enrichment step with random amplified polymorphic DNA (RAPD) primers. A total of nine microsatellites, one tetra- and eight dinucleotides repeats were isolated; seven were found to be polymorphic in a test sample of 30 individuals, with allele numbers/locus varying from 2 to 6. The tetranucleotide locus showed heterozygote deficiency. These primers did not amplify the DNA of Crisia eburnea. [source] Absence of population substructuring in Zimbabwe chicken ecotypes inferred using microsatellite analysisANIMAL GENETICS, Issue 4 2007F. C. Muchadeyi Summary The objective of this study was to investigate the population structure of village chickens found in the five agro-ecological zones of Zimbabwe. Twenty-nine microsatellites were genotyped for chickens randomly selected from 13 populations, including the five eco-zones of Zimbabwe (n = 238), Malawi (n = 60), Sudan (n = 48) and six purebred lines (n = 180). A total of 280 alleles were observed in the 13 populations. Forty-eight of these alleles were unique to the Zimbabwe chicken ecotypes. The average number (±SD) of alleles/locus was 9.7 ± 5.10. The overall heterozygote deficiency in the Zimbabwe chickens (FIT ± SE) was 0.08 ± 0.01, over 90% of which was due to within-ecotype deficit (FIS). Small Nei's standard genetic distances ranging from 0.02 to 0.05 were observed between Zimbabwe ecotypes compared with an average of 0.6 between purebred lines. The structure software program was used to cluster individuals to 2 , K , 7 assumed clusters. The most probable clustering was found at K = 6. Ninety-seven of 100 structure runs were identical, in which Malawi, Sudan and purebred lines split out as independent clusters and the five Zimbabwe ecotypes clustered into one population. The within-ecotype marker-estimated kinships (mean = 0.13) differed only slightly from the between-ecotype estimates. Results from this study lead to a rejection of the hypothesis that village chickens are substructured across agro-ecological zones but indicated high genetic diversity within the Zimbabwe chicken population. [source] | ||||||||||