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Kinds of Harbour Terms modified by Harbour Selected AbstractsIntegron-associated gene cassettes in Halifax Harbour: assessment of a mobile gene pool in marine sedimentsENVIRONMENTAL MICROBIOLOGY, Issue 4 2008J. E. Koenig Summary The integron/gene cassette systems identified in bacteria comprise a class of genetic elements that allow adaptation by acquisition of gene cassettes. Integron gene cassettes have been shown to facilitate the spread of drug resistance in human pathogens but their role outside a clinical setting has not been explored extensively. We sequenced 2145 integron gene cassettes from four marine sediment samples taken from the vicinity of Halifax Nova Scotia, Canada, increasing the number of gene cassettes obtained from environmental microbial communities by 10-fold. Sequence analyses reveals that the majority of these cassettes encode novel proteins and that this study is consistent with previous claims of high cassette diversity as we estimate a Chao1 diversity index of ,3000 cassettes from these samples. The functional distribution of environmental cassettes recovered in this study, when compared with that of cassettes from the only other source with significant sampling (Vibrio genomes) suggests that alternate selection regimes might be acting on these two gene pools. The majority of cassettes recovered in this study encode novel, unknown proteins. In instances where we obtained multiple alleles of a novel protein we demonstrate that non-synonymous versus synonymous substitution rates ratios suggest relaxed selection. Cassette-encoded proteins with known homologues represent a variety of functions and prevalent among these are isochorismatases; proteins involved in iron scavenging. Phylogenetic analysis of these isochorismatases as well as of cassette-encoded acetyltransferases reveals a patchy distribution, suggesting multiple sources for the origin of these cassettes. Finally, the two most environmentally similar sample sites considered in this study display the greatest overlap of cassette types, consistent with the hypothesis that cassette genes encode adaptive proteins. [source] The relative sensitivity of four benthic invertebrates to metals in spiked-sediment exposures and application to contaminated field sedimentENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 4 2003Danielle Milani Abstract The relative sensitivity of four benthic invertebrates (Hyalella azteca, Chironomus riparius, Hexagenia spp., and Tubifex tubifex) was determined for Cd, Cu, and Ni in water-only and in spiked-sediment exposures. Survival (median lethal concentrations [LC50s] and the concentrations estimated to be lethal to 25% of test organisms [LC25s]), and endpoints for growth and reproduction (mean inhibitory concentrations [IC25s]) were compared. The sensitivities differed depending on the species and metal, although some trends emerged. In water-only exposures, H. azteca is the most sensitive species to cadmium and nickel, with mean LC50s of 0.013 and 3.6 mg/L, respectively; C. riparius is the most sensitive species to copper, with a mean LC50 of 0.043 mg/L. In the spiked-sediment exposures, the order in decreasing sensitivity to copper is Hyalella = Hexagenia < Chironomus < Tubifex for survival and growth/reproduction. For cadmium, the order in decreasing sensitivity is Hyalella = Chironomus < Hexagenia < Tubifex, and for nickel is Hyalella , Hexagenia < Chironomus < Tubifex. Chironomus riparius and Hexagenia spp. survival can be used to distinguish between toxicity caused by different metals. Species test responses in field-collected sediment (Collingwood Harbour, ON, Canada) were examined in an attempt to determine the causative agent of toxicity throughout, using the established species sensitivities. Sediment toxicity was categorized first by comparing species responses to those established for a reference database. Test responses in the field-collected sediment do not support causality by Cu, a suspected toxicant based on comparison of sediment chemistry with sediment quality guidelines. [source] Distribution of degradation products of alkylphenol ethoxylates near sewage treatment plants in the lower Great Lakes, North AmericaENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 4 2000Erin R. Bennett Abstract Degradation of alkylphenol ethoxylate (APEO) surfactants in the environment leads to the formation of relatively hydrophobic compounds such as nonylphenol (NP), octylphenol (OP), nonylphenol monoethoxylate (NP1EO), and nonylphenol diethoxylate (NP2EO) that have been shown to have estrogenic activity. Previous studies have shown that sewage treatment plants (STPs) are point sources for these compounds in the aquatic environment. We collected sediment samples at several sites in the vicinity of STPs in Hamilton Harbour and in the Detroit River to determine the spatial distribution of the degradation products of APEOs. In addition, we deployed semipermeable membrane devices (SPMDs) and caged freshwater mussels (Elliptio complanata) at these locations to determine the distribution of these compounds in the dissolved phase and their potential to bioaccumulate in aquatic organisms. The NP, OP, NP1EO, and NP2EO were found at ,g/g (dry wt.) concentrations in sediments and accumulated to ng/g (wet wt.) concentrations in caged mussels near the STPs. However, in the Detroit River, the concentrations of these compounds declined to near background levels in the sediments, water column (i.e., SPMDs), and biota at stations about 1 km downstream from STPs. At stations in Hamilton Harbour, concentrations of APEO degradation products also declined markedly in sediments and SPMDs located a few hundred meters from the STP. These data indicate that degradation products of APEOs can be accumulated by biota near STPs. However, the environmental distribution of these compounds is localized to areas close to the point of discharge. [source] Phylogeny of cyclic nitramine-degrading psychrophilic bacteria in marine sediment and their potential role in the natural attenuation of explosivesFEMS MICROBIOLOGY ECOLOGY, Issue 3 2004Jian-Shen Zhao Abstract Previously we reported on in situ mineralization of cyclic nitramine explosives including hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX) in marine sediment from Halifax Harbour. In the present study, we isolated several novel psychrophilic bacteria from the sediment with optimal growth temperature at 10 or 15 °C. Phylogenetic analysis of their 16S rRNA genes identified the isolates as members of the gamma and delta subdivisions of Proteobacteria, Fusobacteria and Clostridiales. The isolates mineralized 3.7,45.2% of RDX (92 ,M) in 82 days of incubation at 10 °C under oxygen-limited or anaerobic conditions with the gamma subdivision isolates demonstrating the highest mineralization (45.2% of total C). Removal of RDX by all isolates was accompanied by the formation of all three nitroso derivatives, with the mono nitroso derivative (MNX) being the major one. Isolates of the delta proteobacteria and Fusobacteria removed HMX with concurrent formation of the mononitroso derivative (NO-HMX). Using resting cells of isolates of the gamma subdivision, methylenedinitramine (MEDINA) and 4-nitro-2,4-diazabutanal (NDAB) were detected, suggesting ring-cleavage following denitration of either RDX and/or its initially reduced product, MNX. These results clearly demonstrate that psychrophilic bacteria capable of degrading cyclic nitramines are present in the marine sediment, and might contribute to the in situ biodegradation and natural attenuation of the chemicals. [source] ,We're moving out': Youth Out-Migration Intentions in Coastal Non-Metropolitan New South WalesGEOGRAPHICAL RESEARCH, Issue 2 2008DANIELLE DROZDZEWSKI Abstract This article discusses youth out-migration on the non-metropolitan New South Wales Eastern Seaboard. High levels of in-migration and counter-urbanisation, typical of many coastal non-metropolitan towns in NSW, mask the out-migration of youth. There are relatively few 15,24 year olds in the coastal communities of non-metropolitan New South Wales, because many youths out-migrate to larger centres, for a range of reasons. Out-migration also demarcates a life transition away from school life, adolescence and the parental home. This paper draws from research with senior high school students in one coastal town , Coffs Harbour , where such trends have been particularly apparent. It examines the propensity for youth out-migration and discusses how young people articulate their migration intentions. Young people's perceptions of their current and future prospects feature prominently in their discourses about intended migration, although this research also demonstrates that the life courses of regional youth are unorthodox and diverse in nature. [source] Report on Underwater Excavation at the Phoenician Harbour, Atlit, IsraelINTERNATIONAL JOURNAL OF NAUTICAL ARCHAEOLOGY, Issue 2 2010Arad Haggi Atlit is a small Phoenician settlement on the Carmel coast, with an artificial harbour, built during Iron Age II, before the Assyrian occupation, and used until the end of the Persian era. There are no remains of any later construction, in contrast to other Phoenician ports such as Sidon and Tyre. The study of Atlit harbour has therefore provided invaluable information on the positioning, planning and construction of Phoenician harbours in the Levant. This article is a summary of the most recent underwater excavation seasons at the harbour, and presents our conclusions on construction techniques and their historical implications. © 2009 The Author [source] Geology, Materials, and the Design of the Roman Harbour of Soli-Pompeiopolis, Turkey: the ROMACONS field campaign of August 2009INTERNATIONAL JOURNAL OF NAUTICAL ARCHAEOLOGY, Issue 2 2010Christopher Brandon First page of article [source] Reproductive biology of female big-bellied seahorsesJOURNAL OF FISH BIOLOGY, Issue 3 2004C. W. Poortenaar In this study, ovarian morphology, reproductive condition and sex steroid levels were investigated in the big-bellied seahorse Hippocampus abdominalis, collected by snorkel and SCUBA diving in Wellington Harbour, New Zealand. Within the ovary, oocytes were contained between an outer muscular wall and an inner layer of luminal epithelium. Two germinal ridges ran along the entire length of the ovary. In cross-section, oocytes were arranged in sequential order of development beginning at the germinal ridges and ending at the mature edge. Ovarian lamellae were absent. Vitellogenic and advanced cortical alveoli oocytes were elongated in shape, whereas maturing oocytes were distinctively pear-shaped. Mature oocytes were large (2·6 , 4·4 mm in length) and aligned with the animal pole towards the muscular wall. Reproductively mature females were found throughout the year indicating a protracted reproductive season. The gonado-somatic index was significantly different between all ovarian stages, but the hepato-somatic index was not. Females with previtellogenic ovaries had significantly higher plasma concentrations of testosterone than females with vitellogenic or maturing ovaries. There was no significant difference in plasma concentrations of testosterone between females with vitellogenic or maturing ovaries, or in plasma concentrations of 17,-oestradiol between females in all ovarian stages. This study contributes to the knowledge on the reproductive biology of female syngnathids. [source] The effect of environmental factors on the distribution of Neoparamoeba pemaquidensis in TasmaniaJOURNAL OF FISH DISEASES, Issue 10 2005M Douglas-Helders Abstract Aquaculture in Tasmania is mostly carried out in estuaries. These estuarine habitats show a great variety and form unique environments in which Neoparamoeba pemaquidensis, the amoebic gill disease (AGD)-causing protozoan, may or may not survive. Tasmania is divided into two zones, one where AGD is present and one where AGD is absent, but any ecological data to rationalize this distribution is lacking. In in vitro trials N. pemaquidensis strains were exposed to different concentrations of ammonium sulphate, copper sulphate, copper sulphate and tannin, and different Neoparamoeba densities, salinities and temperatures. A trial using field water samples investigated the survival of N. pemaquidensis in waters sourced from AGD-free and AGD-positive zones, and water analysis was performed to determine any differences. Significantly decreased protozoan survival was found with exposure to increasing copper sulphate concentrations from 10 to 100 000,m (P < 0.001), salinity of 15, (P < 0.001), low Neoparamoeba densities of 625 and 1250 cells mL,1 (P = 0.0005), and water sourced from Macquarie Harbour (P < 0.001). The water chemistry of this AGD-free zone showed significantly lower dissolved calcium and magnesium concentrations which may contribute to this area being AGD-free. Understanding of the ecology of N. pemaquidensis will enable better control and prevention strategies for Tasmanian salmon growers. [source] Mid- to late Holocene relative sea-level change in Poole Harbour, southern EnglandJOURNAL OF QUATERNARY SCIENCE, Issue 3 2001Robin J. Edwards Abstract A foraminiferal transfer function for mean tide level (MTL) is used in combination with AMS radiocarbon dated material to construct a record of relative sea-level (RSL) change from Poole Harbour, southern Britain. These new data, based on multiple cores from duplicate sites, indicate four phases of change during the last 5000 cal. (calendar) yr: (i) rising RSL between ca. 4700 cal. yr BP and ca. 2400 cal. yr BP; (ii) stable to falling RSL from ca. 2400 cal. yr BP until ca. 1200 cal. yr BP; (iii) a brief rise in RSL from ca. 1200 cal. yr BP to ca. 900 cal. yr BP, followed by a period of stability; (iv) a recent increase in the rate of RSL rise from ca. 400,200 cal. yr BP until the present day. In addition, they suggest that the region has experienced long-term crustal subsidence at a rate of 0.5 mm C14 yr,1. Although this can account for the overall rise in MTL observed during the past 2500 yr, it fails to explain the changes in the rate of rise during this period. This implies that the phases of RSL change recorded in the marshes of Poole Harbour reflect tidal range variations or ,eustatic' fluctuations in sea-level. Copyright © 2001 John Wiley & Sons, Ltd. [source] Comparison of the USCOM ultrasound cardiac output monitor with pulmonary artery catheter thermodilution in patients undergoing liver transplantation,LIVER TRANSPLANTATION, Issue 7 2008Lai-Sze Grace Wong The aim of the study was to compare the standard technique of cardiac output determination by pulmonary artery catheter thermodilution (PAC-TD) with a noninvasive ultrasound Doppler monitor (USCOM Pty., Ltd., Coffs Harbour, Australia) in surgery for liver transplantation. We wished to determine if the degree of accuracy would allow the ultrasound cardiac output monitor (USCOM) to be used as an alternative monitor in a clinical setting in which wide fluctuations in cardiac output could be expected. This was a prospective method comparison study, with 71 paired measurements obtained in 12 patients undergoing liver transplantation in a university teaching hospital. Bland-Altman analysis of the 2 techniques showed a bias of 0.39 L/minute, with the USCOM cardiac output lower compared with that of PAC-TD. The bias was small and did not vary with the magnitude of the cardiac output. The 95% limits of agreement were ,1.47 and 2.25 L/minute. There was good repeatability for USCOM measurements, with a repeatability coefficient of 0.43 for USCOM versus 0.77 for PAC-TD. We conclude that USCOM is acceptable for the clinical determination of noninvasive cardiac output, particularly in situations in which tracking changes over time is more important than knowing the precise value. However, the utility of USCOM is limited by its inability to measure pulmonary artery pressure. Liver Transpl 14:1038,1043, 2008. © 2008 AASLD. [source] Prepared for challenges: The importance of a professional and institutional ethical identityNEW DIRECTIONS FOR COMMUNITY COLLEGES, Issue 148 2009Sharon K. Anderson Anderson, Harbour, and Davies (2007) have proposed a framework of professional identity development for community college leaders. We further this discussion by introducing the idea of "institutional ethical identity" and offer suggestions for how leaders and constituents can work together to build a shared ethical identity on the community college campus. [source] Emission to air of volatile organotins from tributyltin-contaminated harbour sedimentsAPPLIED ORGANOMETALLIC CHEMISTRY, Issue 5 2002Alfred J. Vella Abstract An analytical method for determining the presence in air of volatile forms (e.g. chlorides) of tributyltin (TBT) and that of methylbutyltins MenBu(4,n)Sn (n,=,1,3) was developed and used to establish whether dredged harbour sediments contaminated with TBT served as sources of air pollution with respect to organotin compounds. The method was based on active sampling of the air being analysed and sorption of analytes onto Poropak-N. Sorbed methylbutyltins were extracted with dichloromethane and analysed by gas chromatography using flame photometric detection. Other butyltins were converted into butyltin hydrides prior to analysis by gas chromatography. It was shown that TBT-contaminated sediments from Marsamxett Harbour, Malta, placed in 0.5 l chambers through which air was displaced by continuous pumping for 11 days released mainly methylbutyltins, with concentrations (as tin) reaching maximum 48,h mean values of 8.7 (Me3BuSn), 22.1 (Me2Bu2Sn) and 93.0,ng m,3(MeBu3Sn) being measured. Other volatile forms of TBT, dibutyltin and monobutyltin were detected in the headspace air, but very infrequently and at much lower tin concentrations (<2,ng m,3). It was also shown that methylbutyltins dissolved in sea-water ([Sn],=,0.2 to 400,ng l,1) were very difficult to exsolve from this medium, even on prolonged evaporation of the solutions using mechanical agitation and active ventilation. The results suggest that emission of methylbutyltins from contaminated sediments probably occurs only from the surface of the material. The environmental implications of these findings in the management of TBT-polluted harbour sediments are discussed. Copyright © 2002 John Wiley & Sons, Ltd. [source] Optimizing intertidal Pacific oyster (Thunberg) culture, Houhora Harbour, northern New ZealandAQUACULTURE RESEARCH, Issue 13 2002S J Handley Abstract Experiments were designed to determine the optimum intertidal rack height and growing density for producing Pacific oysters free of mudworm infestations and flatworm predators in the Houhora Harbour, northern New Zealand. At the same level, oysters grew to a larger size in the front of the farm (seaward) compared with those towards the rear (shoreward). Two experimental ,step racks' were constructed to test for the optimum oyster growth rates, oyster condition, shell density and degree of mudworm shell blistering. When experimental results were ranked for each rack level, extreme low water neap (ELWN) was the optimum growing level for the back of the farm, and 0.25 m above ELWN was the optimum growing level for the front of the farm. An efficient kill of flatworm predators was not achieved by any of the control methods tried, so avoidance of infestations is advised. The optimum density of oysters on a 1.2-m stick required to achieve maximum condition, shell density and ideal shell shape was 4,5 dozen. [source] Conservation of natural wilderness values in the Port Davey marine and estuarine protected area, south-western TasmaniaAQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 3 2010Graham J. Edgar Abstract 1.Port Davey and associated Bathurst Harbour in south-western Tasmania represent one of the world's most anomalous estuarine systems owing to an unusual combination of environmental factors. These include: (i) large uninhabited catchment protected as a National Park; (ii) ria geomorphology but with fjord characteristics that include a shallow entrance and deep 12-km long channel connecting an almost land-locked harbour to the sea; (iii) high rainfall and riverine input that generate strongly-stratified estuarine conditions, with a low-salinity surface layer and marine bottom water; (iv) a deeply tannin-stained surface layer that blocks light penetration to depth; (v) very low levels of nutrients and low aquatic productivity; (vi) weak tidal influences; (vii) marine bottom water with stable temperature throughout the year; (viii) numerous endemic species; (ix) strongly depth-stratified benthic assemblages exhibiting high compositional variability over small spatial scales; (x) deepsea species present at anomalously shallow depths; (xi) no conspicuous introduced taxa; (xii) a predominance of fragile sessile invertebrates, including slow-growing fenestrate bryozoans; and (xii ) sponge spicule- and bryozoan-based sediments that are more characteristic of deep sea and polar environments than those inshore. 2.Although this region has historically been protected by its isolation, seven major anthropogenic stressors now threaten its natural integrity: boating, fishing, dive tourism, nutrient enrichment, introduced species, onshore development, and global climate change. These threats are not randomly distributed but disproportionately affect particular habitat types. 3.For management of environmental risk, the Port Davey,Bathurst Harbour region is subdivided into six biophysical zones, each with different ecological characteristics, values, and types and levels of potential threat. In response to the various threats, the Tasmanian Government has enacted an adaptive management regime that includes a multi-zoned marine protected area and the largest ,no-take' estuarine protected area in Australia. Copyright © 2009 John Wiley & Sons, Ltd. [source] Striking a balance between retaining populations of protected seahorses and maintaining swimming netsAQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 2 2010David Harasti Abstract 1.The fish family Syngnathidae (seahorses, pipefish, pipehorses and seadragons) is fully protected in New South Wales, Australia, but in some countries certain species are threatened by unsustainable collecting, capture as incidental bycatch, and habitat degradation. 2.Within Sydney Harbour, two species of seahorses (Hippocampus abdominalis and Hippocampus whitei) have been found to colonize artificial structures such as jetty pylons and protective netted swimming enclosures. These protective nets are subject to fouling from epibiotic growth (algae, ascidians, bryozoans, etc.) and rubbish, which causes the nets to collapse from the additional weight. Local authorities employ diving contractors on an ad hoc basis to remove the epibiota from nets. 3.Surveys showed a significant decline in the numbers of both seahorse species at one site following the replacement of a net, and recovery of the H. whitei population took more than 15 months. 4.A manipulative experiment tested the importance of epibiotic growth for seahorses. H. whitei, tagged with individual marks, were allocated to sections of a net that had undergone different cleaning procedures. Seahorse size, position on the net and total population abundance were recorded every 2 weeks over a 3 month period. It was demonstrated that seahorses have a significant positive association with epibiotic growth and proximity to the sea floor. Seahorse populations also showed seasonal variation in abundance with increased numbers on the net during the breeding season (spring,summer). 5.This project has led to the development of best practice net cleaning procedures for local authorities in Sydney Harbour to manage growth on the nets while minimizing impacts on seahorse populations. Copyright © 2009 John Wiley & Sons, Ltd. [source] A baseline biological survey of the proposed Taputeranga Marine Reserve (Wellington, New Zealand): spatial and temporal variability along a natural environmental gradientAQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 2 2009Anjali Pande Abstract 1.Four macroalgal, four macroinvertebrate and eight fish species were surveyed at eight sites (three inside, five outside the proposed reserve) over three years before the establishment of the Taputeranga Marine Reserve (MR) on Cook Strait (Wellington, New Zealand). This baseline data set was used to estimate temporal and spatial variability in size and abundance of these taxa, and will be used to quantify taxon-specific changes in size and abundance once the MR is established. 2.Statistically significant differences in size and/or abundance were observed for many taxa among the sites. These differences are consistent with the existence of a natural environmental gradient from the west (entrance to Cook Strait) to the east (Wellington Harbour). This gradient highlights the importance of conducting a pre-reserve baseline survey at multiple sites and over multiple years to better understand the conservation or fisheries benefits that MRs are expected to deliver. 3.Two macroalgal, one macroinvertebrate, and six fish species showed statistically significant seasonal variation in abundance. Subsequent multi-taxa monitoring needs to include a seasonal component to capture this natural variability. 4.This multi-site and multi-year data set represents one of the most comprehensive and robust baseline data sets available anywhere in the world. It will be used to quantify the ecological changes associated with a newly established full no-take marine reserve. Ongoing monitoring will enhance understanding of the sizes and abundances of key taxa, allow a detailed determination of the conservation effects of reserve establishment, and inform management decisions for Wellington's south coast. Copyright © 2008 John Wiley & Sons, Ltd. [source] Harbour swimming nets: a novel habitat for seahorsesAQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 5 2008B. G. Clynick Abstract 1.Artificial structures are becoming increasingly important in conserving biodiversity in urban ecosystems, by providing habitat for endangered or rare species. Their role in providing habitat for such species has, however, been largely unexplored. 2.In Sydney Harbour, Australia, seahorses were observed among the netting used to keep sharks out of swimming enclosures. Over a 2-year period, the relative densities of two species of seahorses observed on netting was measured at swimming enclosures with permanent netting and at swimming areas that were only enclosed with netting during the summer months. 3.The rate of colonization by seahorses to new netting was also examined over a period of 10 months. 4.Numbers of seahorses on permanent swimming enclosures were 10 to 100 times greater than numbers present on swimming enclosures that were only set up during the summer months. 5.This large difference may have been attributed to the slow rate of colonization of seahorses to new habitat. Seahorses were not observed at experimental nets that were deployed in two areas in the harbour until at least 4 months after the netting was deployed. 6.Swimming pool nets are a habitat for species of seahorses in Sydney Harbour and, consequently, the removal or disturbance of swimming nets may impact the survival of these fish. Management of these artificial habitats may therefore best be focused on providing a permanent habitat that may help to compensate for the loss of netting during winter months. Copyright © 2007 John Wiley & Sons, Ltd. [source] Fish assemblages associated with urban structures and natural reefs in Sydney, AustraliaAUSTRAL ECOLOGY, Issue 2 2008B. G. CLYNICK Abstract Fish ecology in urban estuaries is poorly understood. As coastal landscapes are transformed, recognizing the impact that urban structures, such as marinas, seawalls and wharfs, have on local fish populations is becoming increasingly important. The extent to which fish are able to maintain natural ecological assemblages can be measured, to a certain extent, by how closely they mimic natural habitats. In Sydney Harbour, assemblages of fish associated with artificial structures were compared with those associated with natural rocky reefs. Sampling was carried out in five locations, each with a marina, swimming enclosure and natural reef. In each location, different habitats supported different assemblages, but differences between habitats were not consistent among locations. Subsequent sampling compared artificial and natural sites in three different areas in each of three different estuaries. Results indicated that differences in fish assemblages between artificial and natural sites were greater than differences between sites within each habitat, but there were no patterns among different positions in an estuary or from estuary to estuary. This study provides initial evidence that, although artificial habitats generally support the same species as found on natural reefs, assemblages usually differed between natural and artificial habitats. In addition, without knowing if these habitats do, in fact, sustain viable populations of fish, it would be premature to label artificial structures as effective habitat for fish. [source] The coaching toolkit , By Shaun Allison & Michael HarbourBRITISH JOURNAL OF EDUCATIONAL TECHNOLOGY, Issue 6 2009Jo Matthews No abstract is available for this article. [source] Genetic diversity of endangered brown bear (Ursus arctos) populations at the crossroads of Europe, Asia and AfricaDIVERSITY AND DISTRIBUTIONS, Issue 5 2009Sébastien Calvignac Abstract Aim, Middle East brown bears (Ursus arctos syriacus Hemprich and Ehrenberg, 1828) are presently on the edge of extinction. However, little is known of their genetic diversity. This study investigates that question as well as that of Middle East brown bear relationships to surrounding populations of the species. Location, Middle East region of south-western Asia. Methods, We performed DNA analyses on 27 brown bear individuals. Twenty ancient bone samples (Late Pleistocene to 20th century) from natural populations and seven present-day samples obtained from captive individuals were analysed. Results, Phylogenetic analyses of the mitochondrial sequences obtained from seven ancient specimens identify three distinct maternal clades, all unrelated to one recently described from North Africa. Brown bears from Iran exhibit striking diversity (three individuals, three haplotypes) and form a unique clade that cannot be linked to any extant one. Individuals from Syria belong to the Holarctic clade now observed in Eastern Europe, Turkey, Japan and North America. Specimens from Lebanon surprisingly appear as tightly linked to the clade of brown bears now in Western Europe. Moreover, we show that U. a. syriacus in captivity still harbour haplotypes closely linked to those found in ancient individuals. Main conclusion, This study brings important new information on the genetic diversity of brown bear populations at the crossroads of Europe, Asia and Africa. It reveals a high level of diversity in Middle East brown bears and extends the historical distribution of the Western European clade to the East. Our analyses also suggest the value of a specific breeding programme for captive populations. [source] Megaplasmids in Gram-negative, moderately halophilic bacteriaFEMS MICROBIOLOGY LETTERS, Issue 1 2003Montserrat Argandoña Abstract We have discovered that many Halomonas species harbour large extrachromosomal DNA elements. Using currently available protocols it is technically very difficult to identify large plasmids in bacteria, and even more so when they are coated in mucous polysaccharide. We used culture conditions suitable for both halophilic and halophilic exopolysaccharide-producing bacteria and applied a modified gel electrophoresis method to locate and visualise the megaplasmids. Almost all the species of Halomonas studied harbour two plasmids of about 70 kb and 600 kb and some species carry other smaller extrachromosomal DNA elements. The common presence of these megaplasmids may well be related to the survival strategies of the bacteria in their special surroundings. [source] Report on Underwater Excavation at the Phoenician Harbour, Atlit, IsraelINTERNATIONAL JOURNAL OF NAUTICAL ARCHAEOLOGY, Issue 2 2010Arad Haggi Atlit is a small Phoenician settlement on the Carmel coast, with an artificial harbour, built during Iron Age II, before the Assyrian occupation, and used until the end of the Persian era. There are no remains of any later construction, in contrast to other Phoenician ports such as Sidon and Tyre. The study of Atlit harbour has therefore provided invaluable information on the positioning, planning and construction of Phoenician harbours in the Levant. This article is a summary of the most recent underwater excavation seasons at the harbour, and presents our conclusions on construction techniques and their historical implications. © 2009 The Author [source] The Enigma of ,Aydhab: a Medieval Islamic Port on the Red Sea CoastINTERNATIONAL JOURNAL OF NAUTICAL ARCHAEOLOGY, Issue 1 2008David Peacock The medieval Islamic port of ,Aydhab played a major role in the hajj and in trade with Yemen, India and the Far East. A recent satellite image reveals the layout of the town in some detail, but there seems to be no trace of a viable harbour. Yet there was a fine secure harbour at Halaib, 20 km to the south. We tentatively suggest that the main port of ,Aydhab was separate from the town. This hypothesis can only be verified by fieldwork and our objective in this paper is draw attention to the problem rather than to resolve it. © 2007 The Authors [source] Incidence and severity of marine borer attack at different depths at Mtongwe Jetty Pontoon Mombasa, KenyaAFRICAN JOURNAL OF ECOLOGY, Issue 4 2009P. K. Sirmah Abstract The activity of marine borers was investigated at Mtongwe Jetty Pontoon, Mombasa, Kilindini harbour using untreated panels of Pinus patula (Schlecht) submerged to different depths. Twenty test panels replicated over 7 months were each strung in three ladder-like frames using nylon twine and suspended vertically, in such a way that the top most panels were 25 cm below the water surface at low and high tide. Monthly observations were made between January and July for the vertical incidence and extent of marine borer attack following the technique of Bobat (1995). Marine borers were collected from test panels, identified and counted. In addition, the percentage weight loss for panels at different depths was determined at the end of 7 months. Teredo fulleri (Clapp) was dominant on panels near water surface while Martesia striata (Linne) and Lyrodus pedicellatus (Quatrefages) were predominant at the bottom. The results showed that attack began within the first month of exposure and was severest by the seventh month. The vertical incidence and extent of attack decreased with increasing depth of panel exposure and was negatively correlated with depth. This is attributed to changes in hydrographic conditions. Résumé L'activité des foreurs marins a étéétudiée dans le Ponton de Mtongwe Jetty, Mombasa, dans le port de Kilindini, en utilisant des panneaux de Pinus patula (Schlecht) non traités, plongés à différentes profondeurs. Vingt panneaux tests identiques ont été attachés avec des cordes de nylon pour former trois cadres ressemblant à des échelles et suspendus pendant sept mois verticalement de façon à ce que les panneaux supérieurs se trouvent à 25 cm sous la surface à marée basse et haute. L'on a fait des observations mensuelles entre janvier et juillet de l'occurrence verticale et l'étendue de l'attaque des foreurs marins en utilisant la technique de Bobat (1995). Les foreurs marins ont été collectés sur les panneaux tests, identifiés et comptés. De plus, on a déterminé le pourcentage de la perte de poids des panneaux aux différentes profondeurs à la fin des sept mois. Teredo fulleri (Clapp) était dominant sur les panneaux situés près de la surface de l'eau alors que Martesia striata (Linné) et Lyrodus pedicellatus (Quatrefages) étaient prédominants en profondeur. Les résultats ont montré que l'attaque a commencé dès le premier mois et que c'est alors qu'elle fut la plus sévère. L'occurrence verticale et l'étendue de l'attaque diminuaient quand le panneau était plus profond et étaient négativement liées à la profondeur. Cela est attribué aux changements des conditions hydrographiques. [source] Organotin levels in the Ria Formosa lagoon, PortugalAPPLIED ORGANOMETALLIC CHEMISTRY, Issue 7 2002M. R. Coelho Abstract Organotin concentrations were measured in water, sediments and clams (Ruditapes decussatus) from 11 sites in the Ria Formosa lagoon, Portugal, in 1992,93. Results showed a marked spatial pattern of tributyltin (TBT) and dibutyltin concentrations. The highest organotin concentrations were observed at Olhão (site 5), where the most important fishing harbour of the Southern coast of Portugal is located. Results indicated that fishing vessels, moored in the harbour at Olhão (site 5), were the major source of organotin contamination to the lagoon. No significant seasonal trend was observed, suggesting a continuous input of organotin compounds throughout the year. In several areas of the lagoon the TBT burdens in R. decussatus could have deleterious developmental effects. Copyright © 2002 John Wiley & Sons, Ltd. [source] Conservation of natural wilderness values in the Port Davey marine and estuarine protected area, south-western TasmaniaAQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 3 2010Graham J. Edgar Abstract 1.Port Davey and associated Bathurst Harbour in south-western Tasmania represent one of the world's most anomalous estuarine systems owing to an unusual combination of environmental factors. These include: (i) large uninhabited catchment protected as a National Park; (ii) ria geomorphology but with fjord characteristics that include a shallow entrance and deep 12-km long channel connecting an almost land-locked harbour to the sea; (iii) high rainfall and riverine input that generate strongly-stratified estuarine conditions, with a low-salinity surface layer and marine bottom water; (iv) a deeply tannin-stained surface layer that blocks light penetration to depth; (v) very low levels of nutrients and low aquatic productivity; (vi) weak tidal influences; (vii) marine bottom water with stable temperature throughout the year; (viii) numerous endemic species; (ix) strongly depth-stratified benthic assemblages exhibiting high compositional variability over small spatial scales; (x) deepsea species present at anomalously shallow depths; (xi) no conspicuous introduced taxa; (xii) a predominance of fragile sessile invertebrates, including slow-growing fenestrate bryozoans; and (xii ) sponge spicule- and bryozoan-based sediments that are more characteristic of deep sea and polar environments than those inshore. 2.Although this region has historically been protected by its isolation, seven major anthropogenic stressors now threaten its natural integrity: boating, fishing, dive tourism, nutrient enrichment, introduced species, onshore development, and global climate change. These threats are not randomly distributed but disproportionately affect particular habitat types. 3.For management of environmental risk, the Port Davey,Bathurst Harbour region is subdivided into six biophysical zones, each with different ecological characteristics, values, and types and levels of potential threat. In response to the various threats, the Tasmanian Government has enacted an adaptive management regime that includes a multi-zoned marine protected area and the largest ,no-take' estuarine protected area in Australia. Copyright © 2009 John Wiley & Sons, Ltd. [source] Harbour swimming nets: a novel habitat for seahorsesAQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 5 2008B. G. Clynick Abstract 1.Artificial structures are becoming increasingly important in conserving biodiversity in urban ecosystems, by providing habitat for endangered or rare species. Their role in providing habitat for such species has, however, been largely unexplored. 2.In Sydney Harbour, Australia, seahorses were observed among the netting used to keep sharks out of swimming enclosures. Over a 2-year period, the relative densities of two species of seahorses observed on netting was measured at swimming enclosures with permanent netting and at swimming areas that were only enclosed with netting during the summer months. 3.The rate of colonization by seahorses to new netting was also examined over a period of 10 months. 4.Numbers of seahorses on permanent swimming enclosures were 10 to 100 times greater than numbers present on swimming enclosures that were only set up during the summer months. 5.This large difference may have been attributed to the slow rate of colonization of seahorses to new habitat. Seahorses were not observed at experimental nets that were deployed in two areas in the harbour until at least 4 months after the netting was deployed. 6.Swimming pool nets are a habitat for species of seahorses in Sydney Harbour and, consequently, the removal or disturbance of swimming nets may impact the survival of these fish. Management of these artificial habitats may therefore best be focused on providing a permanent habitat that may help to compensate for the loss of netting during winter months. Copyright © 2007 John Wiley & Sons, Ltd. [source] Chihr de l'encens (Yémen)ARABIAN ARCHAEOLOGY AND EPIGRAPHY, Issue 1 2010Claire Hardy-Guilbert Frankincense burners found in al-Shihr's excavations in Yemen, a frankincense harbour during the Islamic period, represent a rare corpus of this type, which is an indication of both specific use and goods from South Arabia. Although associated with the pre-Islamic South Arabian kingdoms, the frankincense burner evolved throughout the Islamic period. This is proved by the long chronological sequence of the al-Shihr site (780,1996). Texts quoting the presence of frankincense, its use and its trade in al-Shihr are cited in this article to support the reputation of this harbour-town, which is part of the maritime trade networks of medieval Islam. The aim of this article is to create a renewal of interest in future archaeological research about this object, which is so often neglected in spite of its importance as a testimony of the customs and exchanges that are deeply rooted in Arabian civilisation. [source] Boston Institute of Contemporary ArtARCHITECTURAL DESIGN, Issue 6 2007Jayne Merkel Abstract Perched on the edge of a wharf overlooking downtown Boston, Diller Scofidio + Renfro's new Institute of Contemporary Art takes advantage of its strange dramatic site, providing useful, unusually provocative spaces for the various arts it was built to house. While it is not surprising that Diller and Scofidio, who are artists themselves, were able to accommodate the complex programme imaginatively, their new firm's handling of the site in their first freestanding American building is impressive indeed. Jayne Merkel explains how the interiors are individualised and energised by the embrace of the harbour in a scheme that minimises the location's drawbacks and turns a visit into an art experience in its own right. Copyright © 2007 John Wiley & Sons, Ltd. [source] | |||||||||||||||||||||||||||||||||||||