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Habitat Modelling (habitat + modelling)

Distribution by Scientific Domains

Life Sciences	80%

Selected Abstracts

Sub-population structure of common fish species in the Elbe River estimated from DNA analysis

JOURNAL OF APPLIED ICHTHYOLOGY, Issue 5 2003
C. Wolter
Summary The aim of this study was to analyse the genetic structure of populations for seven common cyprinid fish species within a 120-km-long stretch of the lowland Elbe River, northern Germany. The results are needed for habitat modelling to estimate the proportion that environmentally based variance has of the total variances of home range, species distribution, habitat use and fish assemblage structure. Polymerase chain reaction (PCR)-fingerprinting offers a rapid, efficient method for generating genetic markers and was therefore used to obtain an overview on population-genetic structures of the following seven fish species: asp (Aspius aspius), bleak (Alburnus alburnus), blue bream (Abramis ballerus), common bream (Abramis brama), gudgeon (Gobio gobio), ide (Leuciscus idus) and roach (Rutilus rutilus). Of the 20 random primers, between eight (ide) and 18 (roach) produced polymorphic bands. The mean levels of genetic similarity between samples, estimated as bandsharing frequencies, varied between 76% in bleak and 98% in asp. The corresponding genetic distances among samples varied between 0.02 ± 0.01 in asp and 0.24 ± 0.09 in bleak. The genetic distances among samples were not significant in all of the pairwise comparisons, and correlated only weakly with the geographic distances among sampling sites. It was therefore concluded that the stretch of the Elbe surveyed was inhabited by single, panmictic populations of the species studied and thus that the observed habitat preferences, fish distribution, home range and ecological performance of species within this area will depend on stochastic environmental factors or result from biotic interactions. [source]

Combined ecological niche modelling and molecular phylogeography revealed the evolutionary history of Hordeum marinum (Poaceae) , niche differentiation, loss of genetic diversity, and speciation in Mediterranean Quaternary refugia

MOLECULAR ECOLOGY, Issue 8 2007
SABINE S. JAKOB
Abstract The Hordeum marinum species group consists of two annual grasses of western Eurasian saline meadows or marshes. The two grasses split in the Quaternary about two million years ago. Hordeum marinum and the diploid of Hordeum gussoneanum (2×) co-occur throughout the Mediterranean basin, while the autotetraploid cytotype of H. gussoneanum (4×) overlaps with its diploid progenitor geographically only in the utmost Eastern Mediterranean, extending from there eastwards into Asia. Using chloroplast sequences of the trnL-F region, six newly developed chloroplast microsatellite loci, ecological predictive models based on climate data, and the present geographical distribution of the two species we analysed differentiation processes in the H. marinum group. The chloroplast data indicated clear differences in the history of both species. For H. marinum we found a subdivision between genetically variable populations from the Iberian Peninsula and the more uniform populations from the remaining Mediterranean. As an explanation, we assume Pleistocene fragmentation of an earlier widespread population and survival in an Iberian and a Central Mediterranean glacial refuge. Chloroplast variation was completely absent within the cytotypes of H. gussoneanum, indicating a severe and recent genetic bottleneck. Due to this lack of chloroplast variation only the combination of ecological habitat modelling with molecular data analyses allowed conclusions about the history of this taxon. The distribution areas of the two cytotypes of H. gussoneanum overlap today in parts of Turkey, indicating an area with similar climate conditions during polyploid formation. However, after its origin the polyploid cytotype underwent a pronounced ecological shift, compared to its diploid progenitor, allowing it to colonize mountainous inland habitats between the Mediterranean basin and Afghanistan. The extant sympatric occurrence of H. marinum and H. gussoneanum 2× in the Mediterranean region is interpreted as a result of secondary contact after fast Holocene range expansion out of different ice age refugia. [source]

Fauna habitat modelling and mapping: A review and case study in the Lower Hunter Central Coast region of NSW

AUSTRAL ECOLOGY, Issue 7 2005
BRENDAN A. WINTLE
Abstract Habitat models are now broadly used in conservation planning on public lands. If implemented correctly, habitat modelling is a transparent and repeatable technique for describing and mapping biodiversity values, and its application in peri-urban and agricultural landscape planning is likely to expand rapidly. Conservation planning in such landscapes must be robust to the scrutiny that arises when biodiversity constraints are placed on developers and private landholders. A standardized modelling and model evaluation method based on widely accepted techniques will improve the robustness of conservation plans. We review current habitat modelling and model evaluation methods and provide a habitat modelling case study in the New South Wales central coast region that we hope will serve as a methodological template for conservation planners. We make recommendations on modelling methods that are appropriate when presence-absence and presence-only survey data are available and provide methodological details and a website with data and training material for modellers. Our aim is to provide practical guidelines that preserve methodological rigour and result in defendable habitat models and maps. The case study was undertaken in a rapidly developing area with substantial biodiversity values under urbanization pressure. Habitat maps for seven priority fauna species were developed using logistic regression models of species-habitat relationships and a bootstrapping methodology was used to evaluate model predictions. The modelled species were the koala, tiger quoll, squirrel glider, yellow-bellied glider, masked owl, powerful owl and sooty owl. Models ranked sites adequately in terms of habitat suitability and provided predictions of sufficient reliability for the purpose of identifying preliminary conservation priority areas. However, they are subject to multiple uncertainties and should not be viewed as a completely accurate representation of the distribution of species habitat. We recommend the use of model prediction in an adaptive framework whereby models are iteratively updated and refined as new data become available. [source]