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Alternative Hypotheses (alternative + hypothesis)
Selected AbstractsScent Marking in Female Prairie Voles: a Test of Alternative HypothesesETHOLOGY, Issue 6 2002Jerry O. Wolff We conducted three experiments with females in different stages of reproductive condition to test alternative hypotheses for the function of scent marking in female prairie voles, Microtus ochrogaster. The three reproductive categories were isolated females prior to sexual stimulation (anoestrous), sexually stimulated (oestrous) and lactating. Females in different reproductive condition were given the opportunity to scent mark clean unmarked substrate or areas that had previously been marked by adult females or adult males. The numbers of scent marks deposited by females did not differ statistically for females in different reproductive condition. However, there was a trend for anoestrous females to mark the most, oestrous females less, and lactating females the least. The lack of scent marking by lactating females might be to reduce conspicuousness to conspecifics or predators. Oestrous females tended to mark the most in the area marked previously by males, although the difference was not statistically significant. Our results provide some support for a mate-attraction hypothesis and a territorial-defense hypothesis, but were most consistent with a self-advertisement hypothesis. Over marking was uncommon and did not differ by experiment or sex of previous donor. Our results suggest that the number and placement of scent marks by females are highly variable and function primarily to convey individual identity. [source] Etiology of cicatricial alopecias: a basic science point of viewDERMATOLOGIC THERAPY, Issue 4 2008Kevin J. McElwee ABSTRACT: This article presents a short summary of our current knowledge of cicatricial alopecia disease pathogenesis and the hypothetical disease mechanisms that may be involved in scarring alopecia development. Several forms of scarring alopecia likely involve targeted cytotoxic action against hair follicle cells mediated by a folliculocentric inflammation. However, the specific nature of the inflammatory interference in hair follicle growth is open to question. A popular hypothesis of lymphocyte-mediated scarring alopecia development involves autoimmune targeting of hair follicle,specific self-antigens, although there is no direct evidence in support of such a view. Alternative hypotheses focus on defects in sebaceous gland function, destruction of hair follicle stem cells, and interference in the communication between hair follicle mesenchyme and epithelium. Many questions arise from these hypotheses, and addressing them with a systematic research approach may enable significant advances in understanding cicatricial alopecia etiology. [source] SPATIOTEMPORAL REORGANIZATION OF GROWTH RATES IN THE EVOLUTION OF ONTOGENYEVOLUTION, Issue 4 2000Miriam L. Zelditch Abstract. Heterochrony, evolutionary changes in rate or timing of development producing parallelism between ontogeny and phylogeny, is viewed as the most common type of evolutionary change in development. Alternative hypotheses such as heterotopy, evolutionary change in the spatial patterning of development, are rarely entertained. We examine the evidence for heterochrony and heterotopy in the evolution of body shape in two clades of piranhas. One of these is the sole case of heterochrony previously reported in the group; the others were previously interpreted as cases of heterotopy. To compare ontogenies of shape, we computed ontogenetic trajectories of shape by multivariate regression of geometric shape variables (i.e., partial warp scores and shape coordinates) on centroid size. Rates of development relative to developmental age and angles between the trajectories were compared statistically. We found a significant difference in developmental rate between species of Serrasalmus, suggesting that heterochrony is a partial explanation for the evolution of body shape, but we also found a significant difference between their ontogenetic transformations; the direction of the difference between them suggests that heterotopy also plays a role in this group. In Pygocentrus we found no difference in developmental rate among species, but we did find a difference in the ontogenies, suggesting that heterotopy, but not heterochrony, is the developmental basis for shape diversification in this group. The prevalence of heterotopy as a source of evolutionary novelty remains largely unexplored and will not become clear until the search for developmental explanations looks beyond heterochrony. [source] The diversification and extinction of Doushantuo-Pertatataka acritarchs in South China: causes and biostratigraphic significanceGEOLOGICAL JOURNAL, Issue 3-4 2007Zhou Chuanming Abstract The Ediacaran Period immediately follows the last Cryogenian glaciation,the ,635,Ma Marinoan or Nantuo glaciation, and it is also punctuated by another brief glaciation,the ,582,Ma Gaskiers glaciation. It is possible that these glaciations may have had significant impact on Ediacaran biological evolution (e.g. the appearance or disappearance of Doushantuo-Pertatataka acritarchs). Alternative hypotheses propose that the diversification of Doushantuo-Pertatataka acritarchs was caused by the Acraman bolide impact or by emerging eumetazoans. To test these hypotheses, high-resolution geochronological and biostratigraphic data are required. The Doushantuo Formation in South China, radiometrically constrained between ,635 and ,551,Ma, has the potential to clarify the global picture of early-middle Ediacaran evolution. Here we present preliminary biostratigraphic data from the Doushantuo Formation in the East Yangtze Gorges area and new ,13C chemostratigraphic data from the Doushantuo Formation at Weng'an. These and previously published palaeontological data, aided by the tool of ,13C chemostratigraphy, indicate that the biostratigraphic record of the Doushantuo Formation is locally sensitive to the availability of specific taphonomic windows. In the East Yangtze Gorges area, Doushantuo-Pertatataka acritarchs first appeared shortly after the termination of the Nantuo glaciation and gradually diversified throughout the Doushantuo Formation. At Weng'an, however, such acritarchs first appear,abruptly and in much greater diversity,in phosphorite of the upper Doushantuo Formation, immediately above a subaerial exposure surface. Thus, the biostratigraphic pattern in the East Yangtze Gorges area permits, whereas that at Weng'an apparently disallows, a causal relationship between the Nantuo glaciation and the diversification of Doushantuo-Pertatataka acritarchs. We conclude that the biostratigraphic record is incomplete at Weng'an, where the early Ediacaran evolutionary history is not preserved. The South China data indicate that special attention has to be paid to taphonomic and palaeoenvironmental analysis before extrapolating local and regional biostratigraphic ranges to make global interpretations. It is less clear when Doushantuo-Pertatataka acritarchs disappeared. Previous investigators have variously suggested that they disappeared before, at, or after, the Gaskiers glaciation. These hypotheses are difficult to test because of the lack of sedimentary evidence for the Gaskiers glaciation in South China and other regions (e.g. South Australia) where Doushantuo-Pertatataka acritarchs are abundant. In Australia, Doushantuo-Pertatataka acritarchs are thought to have experienced a sharp decline after the Egan glaciation, which may well be equivalent to the Gaskiers glaciation. If true, then Doushantuo-Pertatataka acritarchs are largely restricted to the interval between the Nantuo and Gaskiers glaciations. This conclusion allows us to place constraints on the possible causes of the diversification and extinction of Doushantuo-Pertatataka acritarchs and has important implications for the biostratigraphic significance of Doushantuo-Pertatataka acritarchs. Copyright © 2006 John Wiley & Sons, Ltd. [source] Are there two cryptic species of the lesser jerboa Jaculus jaculus (Rodentia: Dipodidae) in Tunisia?BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 4 2010Evidence from molecular, cytogenetic data, morphometric Jerboas belonging to the genus Jaculus are widely distributed rodents inhabiting Palearctic desert and semi-desert areas. Previous studies on the lesser Egyptian jerboa Jaculus jaculus showed the existence of various morphological forms of controversial taxonomic status. They were sometimes related to two different species, J. jaculus and Jaculus deserti, although this has not been recognized in recent taxonomic updates. To clarify the systematic status of J. jaculus in Tunisia, we performed molecular (phylogenetic analyses of cytochrome b sequences), morphological (multivariate analyses of 13 skull measurements) and karyotypic (standard preparations from bone marrow cells) analyses on a number of specimens collected from ten localities. Our analyses revealed two monophyletic, well differentiated clades, with a mean genetic divergence value (K2P = 10.9 ± 0.01%), which is within the range of distances generally observed between rodent species. Morphometric analyses clearly separated populations of the two genetic clades from each other. However, karyotypes of individuals from both clades appeared similar. Individuals from both molecular clades/morphometric groups were found in sympatry in most of the localities sampled. These results, as obtained from a restricted area of the total distribution, suggest that there are two separate species within the currently accepted J. jaculus in Tunisia. Alternative hypotheses such as the occurrence of a strong, ancient phylogeographic structure, or the presence of pseudogenes, are also considered to account for the results obtained. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 99, 673,686. [source] The clinical and neuroimaging studies in Holmes tremorACTA NEUROLOGICA SCANDINAVICA, Issue 5 2010A. Gajos Gajos A, Bogucki A, Schinwelski M, So,tan W, Rudzi,ska M, Budrewicz S, Koszewicz M, Majos A, Górska-Chrz,stek M, Bie,kiewicz M, Ku,mierek J, S,awek J. The clinical and neuroimaging studies in Holmes tremor. Acta Neurol Scand: 2010: 122: 360,366. © 2010 The Authors Journal compilation © 2010 Blackwell Munksgaard. Aim,,, Holmes tremor (HT) is a combination of rest, postural and action tremor. A parallel dysfunction of cerebello-thalamic and nigrostriatal pathways seems necessary to produce this kind of tremor. We present the clinical and neuroimaging study verifying that hypothesis. Material and methods,,, A total of 10 patients: five male, five female, fulfilling consensus criteria were included. Demographic, clinical and neuroimaging data (MRI = 9; CT = 1, SPECT with the use of 123-I-FP CIT: DaTSCAN in six patients to assess the presynaptic dopaminergic nigrostriatal system involvement, indices of asymmetry for ligand uptake for each striatum were calculated) were analyzed. Results,,, Hemorrhage was the most frequent etiology and thalamus , the most commonly involved structure. Contrary to the previous reports, the visual assessment did not reveal remarkable interhemispheric differences of DaTSCAN uptake. Quantitative measurements showed only minimal differences. Conclusions,,, It is open to debate whether nigrostriatal pathway damage is crucial for the phenomenology of HT. Alternative hypothesis is presented that HT represents the heterogeneous spectrum of tremors with similar phenomenology, but different pathophysiology. [source] Maternal exposure to first-trimester sunshine is associated with increased birth weight in human infantsDEVELOPMENTAL PSYCHOBIOLOGY, Issue 4 2004Karen Tustin Abstract Two alternative hypotheses have been generated to account for seasonal variation in the birth weight of human infants born in industrialized countries. First, it has been hypothesized that low ambient temperature during the second trimester of gestation decreases birth weight. Second, it has been hypothesized that exposure to bright sunshine during the first trimester increases birth weight. We tested these two hypotheses to determine which, if either, accounted for seasonal variation in birth weight of full-term infants. Birth weight data, collected over a 5-year period, were analyzed as a function of peak and trough sunshine and ambient temperature. Although there was no effect of ambient temperature during any trimester on birth weight, infants whose mothers were exposed to peak sunshine during their first trimester were born significantly heavier than infants whose mothers experienced trough levels of sunshine during the same trimester. Furthermore, infants whose mothers were exposed to trough levels of sunshine during their second and third trimesters were born significantly heavier than infants whose mothers were exposed to peak levels of sunshine during the same trimesters. We hypothesize that high levels of sunshine during early gestation may increase the level of insulin-like growth factor (IGF)-1, facilitating prenatal growth. © 2004 Wiley Periodicals, Inc. Dev Psychobiol 45: 221,230, 2004. [source] Searching for food in the wild: a nonhuman rimate's expectations about invisible displacementDEVELOPMENTAL SCIENCE, Issue 1 2001Marc D. Hauser Five experiments involving invisible displacements were run on a population of semi-free-ranging rhesus monkeys (Macaca mulatta). The goal of these experiments was to assess, without training, the kinds of expectations individuals spontaneously set up when an object has moved out of sight. The first experiment, modeled after studies of human infants and children, involved a table with one box on the top surface and a second box lined up below on the ground. An occluder was placed in front of the table, blocking the subject's view. A piece of food was then dropped behind the occluder, above the top box. The presenter then removed the occluder, walked away, and allowed the subject to approach. Consistently, subjects searched in the incorrect bottom box. This error can be interpreted as a failure to understand solidity, containment, or some other factor. It can also be interpreted as an error guided by a gravity bias, i.e. an expectation that all falling objects fall straight down or to the lowest point. Experiments 2,5 tested these alternative hypotheses. Results show that rhesus monkeys do not have an inherent bottom box bias, are not avoiding the top box, and do recognize that in some contexts boxes can contain or hold food. Thus, for example, when the two boxes are placed on the ground, one in front of the other, and occluded, subjects search in the near box after a piece of food has been rolled behind the occluder (horizontal trajectory). This shows that rhesus can solve an invisible displacement problem that involves solid containers, where one container blocks travel to the other container. We conclude that the rhesus monkey's error in Experiment 1 is guided by an expectation that all falling objects fall straight down or, at least, to the lowest point. This expectation represents a limitation of their knowledge of physical objects and events. [source] Ecological boundary detection using Carlin,Chib Bayesian model selectionDIVERSITY AND DISTRIBUTIONS, Issue 6 2005Ralph Mac Nally ABSTRACT Sharp ecological transitions in space (ecotones, edges, boundaries) often are where ecologically important events occur, such as elevated or reduced biodiversity or altered ecological functions (e.g. changes in productivity, pollination rates or parasitism loads, nesting success). While human observers often identify these transitions by using intuitive or gestalt assignments (e.g. the boundary between a remnant woodland patch and the surrounding farm paddock seems obvious), it is clearly desirable to make statistical assessments based on measurements. These assessments often are straightforward to make if the data are univariate, but identifying boundaries or transitions using compositional or multivariate data sets is more difficult. There is a need for an intermediate step in which pairwise similarities between points or temporal samples are computed. Here, I describe an approach that treats points along a transect as alternative hypotheses (models) about the location of the boundary. Carlin and Chib (1995) introduced a Bayesian technique for comparing non-hierarchical models, which I adapted to compute the probabilities of each boundary location (i.e. a model) relative to the ensemble of models constituting the set of possible points of the boundary along the transect. Several artificial data sets and two field data sets (on vegetation and soils and on cave-dwelling invertebrates and microclimates) are used to illustrate the approach. The method can be extended to cases in with several boundaries along a gradient, such as where there is an ecotone of non-zero thickness. [source] Follow-up of an exercise-based treatment for children with reading difficultiesDYSLEXIA, Issue 2 2007David Reynolds Abstract This study reports the results of a long-term follow-up of an exercise-based approach to dyslexia-related disorders (Reynolds, Nicolson, & Hambly, Dyslexia, 2003; 9(1): 48,71). In the initial study, children at risk of dyslexia were identified in 3 years of a junior school. One half then undertook a 6 month, home-based exercise programme. Evaluation after 6 months indicated that the exercise group improved significantly more than the controls on a range of cognitive and motor skills. Critics had suggested that the improvement might be attributable to artifactual issues including Hawthorne effects; an initial literacy imbalance between the groups; and inclusion of non-dyslexic participants. The present study evaluated the issue of whether the gains were maintained over the following 18 months, and whether they were in some sense artifactual as postulated by critics of the original study. Comparison of (age-adjusted) initial and follow-up performance indicated significant gains in motor skill, speech/language fluency, phonology, and working memory. Both dyslexic and non-dyslexic low achieving children benefited. There was also a highly significant reduction in the incidence of symptoms of inattention. Interestingly there were no significant changes in speeded tests of reading and spelling, but there was a significant improvement in (age-adjusted) reading (NFER). It is concluded that the gains were indeed long-lasting, and that the alternative hypotheses based on potential artifacts were untenable, and that the exercise treatment therefore achieved its applied purpose. Further research is needed to determine the underlying reasons for the benefits. Possible (and potentially synergistic) explanations include: improved cerebellar function (neural level); improved learning ability and/or attentional ability (cognitive level); improved self-esteem and self-efficacy (affective level); and improved parental/familial support (social level). Copyright © 2006 John Wiley & Sons, Ltd. [source] Competitive coexistence in spatially structured environments: a synthesisECOLOGY LETTERS, Issue 12 2003Priyanga Amarasekare Abstract Theoretical developments in spatial competitive coexistence are far in advance of empirical investigations. A framework that makes comparative predictions for alternative hypotheses is a crucial element in narrowing this gap. This review attempts to synthesize spatial competition theory into such a framework, with the goal of motivating empirical investigations that adopt the comparative approach. The synthesis presented is based on a major axis, coexistence in spatially homogeneous vs. heterogeneous competitive environments, along which the theory can be organized. The resulting framework integrates such key concepts as niche theory, spatial heterogeneity and spatial scale(s) of coexistence. It yields comparative predictions that can guide empirical investigations. [source] Contrasting alternative hypotheses about rodent cycles by translating them into parameterized modelsECOLOGY LETTERS, Issue 3 2001Peter Turchin Ecologists working on population cycles of arvicoline (microtine) rodents consider three ecological mechanisms as the most likely explanations of this long-standing puzzle in population ecology: maternal effects, interaction with specialist predators, and interaction with the food supply. Each of these hypotheses has now been translated into parameterized models, and has been shown to be capable of generating second-order oscillations (that is, population cycles driven by delayed density dependence). This development places us in a unique situation for population ecology. We can now practice "strong inference" by explicitly and quantitatively comparing the predictions of the three rival hypotheses with data. In this review, we contrast the ability of each hypothesis to explain various empirically observed features of rodent cycles, with a particular emphasis on the well-studied case of Microtus agrestis and other small rodents in Fennoscandia (Finland, Sweden and Norway). Our conclusion is that the current evidence best supports the predation hypothesis. [source] Effects of terrestrial pollutants on insect parasitoids,ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 6 2009Casey D. Butler Abstract Parasitoids are important organisms in the regulation of insect herbivores in natural, urban, and agricultural ecosystems. The impact of pollutants acting on parasitoids has not been extensively reviewed. This prompted us to propose a falsifiable null hypothesis (pollutants have no effects on parasitoids) and two alternative hypotheses (pollution negatively or positively affects parasitoids) to assess in the available literature the effects of pollutants acting on parasitoids. We found 26 studies examining 39 biological systems that met our criteria for inclusion. Of these studies, 18 of the 39 biological systems (46.2%) supported the null hypothesis while 18 (46.2%) supported the first alternative hypothesis in which pollutants exhibited negative effects on parasitoids. Only a small percentage of the studies (7.6%, 3 of 39) supported the second alternative hypothesis suggesting that pollutants had positive effects on parasitoids. We provide a synthesis of the available data by pollution type, summarize trends for different pollutants, and suggest future areas of research. [source] Parental Effort in Relation to Structural Plumage Coloration in the Mountain Bluebird (Sialia currucoides)ETHOLOGY, Issue 9 2007Susan L. Balenger Indicator models of sexual selection suggest that costly ornaments signal reliable information regarding an individual's quality to potential mates. In species that produce altricial offspring, the amount of parental care provided by both males and females can impact reproductive success. The Good Parent Hypothesis proposes that ornamentation in biparental species can act as an honest signal of parental ability to potential mates. We tested this hypothesis using the mountain bluebird (Sialia currucoides), a sexually dichromatic, socially monogamous species in which both sexes have structurally based ornamental plumage coloration. A male's plumage color predicted neither the rate at which it provisioned nestlings nor brood growth rate. The same was true for females. We also found no indication of assortative mating by color or body condition. Feeding rates within pairs were positively correlated, which we suggest may be due to pairs responding similarly to the perceived needs of nestlings or to local area prey availability. In sum, our results do not support the Good Parent Hypothesis as an explanation for the evolution of ornamental plumage color in mountain bluebirds. We suggest alternative hypotheses for the evolution of ornamental plumage color in this species. [source] Scent Marking in Female Prairie Voles: a Test of Alternative HypothesesETHOLOGY, Issue 6 2002Jerry O. Wolff We conducted three experiments with females in different stages of reproductive condition to test alternative hypotheses for the function of scent marking in female prairie voles, Microtus ochrogaster. The three reproductive categories were isolated females prior to sexual stimulation (anoestrous), sexually stimulated (oestrous) and lactating. Females in different reproductive condition were given the opportunity to scent mark clean unmarked substrate or areas that had previously been marked by adult females or adult males. The numbers of scent marks deposited by females did not differ statistically for females in different reproductive condition. However, there was a trend for anoestrous females to mark the most, oestrous females less, and lactating females the least. The lack of scent marking by lactating females might be to reduce conspicuousness to conspecifics or predators. Oestrous females tended to mark the most in the area marked previously by males, although the difference was not statistically significant. Our results provide some support for a mate-attraction hypothesis and a territorial-defense hypothesis, but were most consistent with a self-advertisement hypothesis. Over marking was uncommon and did not differ by experiment or sex of previous donor. Our results suggest that the number and placement of scent marks by females are highly variable and function primarily to convey individual identity. [source] A High-Frequency Investigation of the Interaction between Volatility and DAX ReturnsEUROPEAN FINANCIAL MANAGEMENT, Issue 3 2010Philippe Masset G10; G12; G13 Abstract One of the most noticeable stylised facts in finance is that stock index returns are negatively correlated with changes in volatility. The economic rationale for the effect is still controversial. The competing explanations have different implications for the origin of the relationship: Are volatility changes induced by index movements, or inversely, does volatility drive index returns? To differentiate between the alternative hypotheses, we analyse the lead-lag relationship of option implied volatility and index return in Germany based on Granger causality tests and impulse-response functions. Our dataset consists of all transactions in DAX options and futures over the time period from 1995 to 2005. Analyzing returns over 5-minute intervals, we find that the relationship is return-driven in the sense that index returns Granger cause volatility changes. This causal relationship is statistically and economically significant and can be clearly separated from the contemporaneous correlation. The largest part of the implied volatility response occurs immediately, but we also observe a smaller retarded reaction for up to one hour. A volatility feedback effect is not discernible. If it exists, the stock market appears to correctly anticipate its importance for index returns. [source] Between ideology and social representations: Four theses plus (a new) one on the relevance and the meaning of the political left and rightEUROPEAN JOURNAL OF POLITICAL RESEARCH, Issue 5 2009PIERGIORGIO CORBETTA This study analyses the relevance and the meaning given by Italians to the political labels ,left' and ,right' between 1975 and 2006. Based on responses to the open-ended question ,What do you mean by "left/right" in politics?', the study compares five alternative hypotheses on the meaning of the left-right axis and show that, despite the alleged end of ideologies, the relevance of the axis has increased over time. A core of abstract meanings persists throughout the thirty-year period considered. As the importance of abstract meanings has increased over time, reference to more concrete contents (such as ,parties' and ,leaders') has decreased. The findings thus support the hypothesis that the left-right axis has the functional characteristics of social representations. [source] ,Seek and ye shall find': antecedents of assimilation and contrast in social comparisonEUROPEAN JOURNAL OF SOCIAL PSYCHOLOGY, Issue 5 2001Thomas Mussweiler Based on a Selective Accessibility (SA) model of comparison consequences, it is suggested that the self-evaluative effects of social comparisons depend on the nature of the hypothesis that is tested as a starting-point of the comparison process. If judges test the hypothesis that they are similar to the standard, then standard-consistent self-knowledge is rendered accessible so that self-evaluations are assimilated towards the standard. If judges test the hypothesis that they are dissimilar from the standard, however, standard-inconsistent self-knowledge is made accessible so that self-evaluations are contrasted away from the standard. These predictions are tested by inducing participants to test for similarity versus dissimilarity to the standard via a procedural priming manipulation. Consistent with the SA model, assimilation occurs if participants are procedurally primed to focus on similarities to the standard, whereas contrast results if they are primed to focus on dissimilarities. These findings suggest that similarity versus dissimilarity testing is a crucial determinant of assimilation versus contrast. It is proposed that distinguishing between these two alternative hypotheses may provide an integrative framework for an understanding of the self-evaluative consequences of social comparisons. Copyright © 2001 John Wiley & Sons, Ltd. [source] GENETICS AND RECENT HUMAN EVOLUTIONEVOLUTION, Issue 7 2007Alan R. Templeton Starting with "mitochondrial Eve" in 1987, genetics has played an increasingly important role in studies of the last two million years of human evolution. It initially appeared that genetic data resolved the basic models of recent human evolution in favor of the "out-of-Africa replacement" hypothesis in which anatomically modern humans evolved in Africa about 150,000 years ago, started to spread throughout the world about 100,000 years ago, and subsequently drove to complete genetic extinction (replacement) all other human populations in Eurasia. Unfortunately, many of the genetic studies on recent human evolution have suffered from scientific flaws, including misrepresenting the models of recent human evolution, focusing upon hypothesis compatibility rather than hypothesis testing, committing the ecological fallacy, and failing to consider a broader array of alternative hypotheses. Once these flaws are corrected, there is actually little genetic support for the out-of-Africa replacement hypothesis. Indeed, when genetic data are used in a hypothesis-testing framework, the out-of-Africa replacement hypothesis is strongly rejected. The model of recent human evolution that emerges from a statistical hypothesis-testing framework does not correspond to any of the traditional models of human evolution, but it is compatible with fossil and archaeological data. These studies also reveal that any one gene or DNA region captures only a small part of human evolutionary history, so multilocus studies are essential. As more and more loci became available, genetics will undoubtedly offer additional insights and resolutions of human evolution. [source] DOMESTICATION OF MAIZE, SORGHUM, AND SUGARCANE DID NOT DRIVE THE DIVERGENCE OF THEIR SMUT PATHOGENSEVOLUTION, Issue 2 2007Andrew B. Munkacsi We investigated two alternative hypotheses for the origin of crop pathogen species: that human-mediated agricultural practices drove the divergence of many crop plant pathogen species or that coevolutionary processes in natural populations of the crops' ancestors drove divergence of pathogen species. We distinguished between these two hypotheses by constructing a robust multigene phylogeny and estimating the dates of divergence among four, monophyletic species of smut fungi (Ustilago maydis, U. scitaminea, Sporisorium reilianum, S. sorghi) known to specifically infect maize, sorghum, sugarcane, and their wild ancestors. Without a fossil record for smut fungi, we calibrated the pathogen species' divergence times to their plant host divergence times. Specifically, a calibration date of 10,000 years was employed to test the hypothesis that the fungal species originated at the time of domestication of their current hosts and a calibration date of 50 million years was employed to test the hypothesis that the fungal species originated on wild ancestors of their domesticated hosts. Substitution rates at five protein coding genes were calculated and rates obtained for the 10,000 year calibration date were orders of magnitude faster than those commonly reported for eukaryotes, thus rejecting the hypothesis that these smut pathogen species diverged at the time of domestication. In contrast, substitution rates obtained for the 50 million year calibration were comparable to eukaryotic substitution rates. We used the 50 million year calibration to estimate divergence times of taxa in two datasets, one comprised solely the focal species and one comprised the focal species and additional related taxa. Both datasets indicate that all taxa diverged millions of years ago, strongly supporting the hypothesis that smut species diverged before the time of domestication and modern agriculture. Thus, smut species diverged in the ecological context of natural host plant and fungal populations. [source] CONTEMPORARY PATTERNS IN A HISTORICAL CONTEXT: PHYLOGEOGRAPHIC HISTORY OF THE PIPEVINE SWALLOWTAIL, BATTUS PHILENOR (PAPILIONIDAE)EVOLUTION, Issue 5 2003James A. Fordyce Abstract We examined mitochondrial DNA (mtDNA) variation in pipevine swallowtail butterflies (Battus philenor) from throughout its extant range to provide a historical, phylogeographical context for ecological studies of the disjunct population in California. We evaluate current hypotheses regarding host plant use, behavior, and mimetic relationships of B. philenor populations and generate alternative hypotheses. Compared to populations throughout the rest of the species' range, California populations are ecologically distinct in that they lack mimics, lay significantly larger clutches of eggs, and exclusively use a unique, endemic larval host plant. Analysis of molecular variance, tests of population differentiation, and nested clade analysis of mtDNA variation indicate that, despite low levels of population genetic structure across the species' range, there is evidence of recent range expansion from presumed Pleistocene refuge(s) in southeastern North America. Colonization of California appears to have been a recent event. This phylogeographic investigation also suggests that the evolution of life-history adaptations to a novel larval host has occurred rapidly in California and the lack of mimics in California may be attributable to the recency of colonization. [source] Human evolution at the Matuyama-Brunhes boundaryEVOLUTIONARY ANTHROPOLOGY, Issue 1 2004Article first published online: 12 FEB 200, Giorgio Manzi Abstract The cranial morphology of fossil hominids between the end of the Early Pleistocene and the beginning of the Middle Pleistocene provides crucial evidence to understand the distribution in time and space of the genus Homo. This evidence is critical for evaluating the competing models regarding diversity within our genus. The debate focuses on two alternative hypotheses, one basically anagenetic and the other cladogenetic. The first suggests that morphological change is so diffused, slow, and steady that it is meaningless to apply species names to segments of a single lineage. The second is that the morphological variation observed in the fossil record can best be described as a number of distinct species that are not connected in a linear ancestor-descendant sequence. Today much more fossil evidence is available than was in the past to test these alternative hypotheses, as well as intermediate variants. Special attention must be paid to Africa because this is the most probable continental homeland for both the origin of the genus Homo (around 2.5,2 Ma),1 as well as the site, two million or so years later, of the emergence of the species H. sapiens.2 However, the African fossil record is very poorly represented between 1 Ma and 600 ka. Europe furnishes recent discoveries in this time range around the Matuyama-Brunhes chron boundary (780,000 years ago), a period for which, at present, we have no noteworthy fossil evidence in Africa or the Levant. Two penecontemporaneous sources of European fossil evidence, the Ceprano calvaria (Italy)3 and the TD6 fossil assemblage of Atapuerca (Spain)4 are thus of great interest for testing hypotheses about human evolution in the fundamental time span bracketed between the late Early and the Middle Pleistocene. This paper is based on a phenetic approach to cranial variation aimed at reviewing the Early-to-Middle Pleistocene trajectories of human evolution. The focus of the paper is on neither the origin nor the end of the story of the genus Homo, but rather its chronological and phylogenetic core. Elucidation of the evolutionary events that happened around 780 ka during the transition from the Early to Middle Pleistocene is one of the new frontiers for human paleontology, and is critical for understanding the processes that ultimately led to the origin of H. sapiens. [source] Seascape genetics and the spatial ecology of marine populationsFISH AND FISHERIES, Issue 4 2008Kimberly A Selkoe Abstract Molecular tools perform at their best when integrated with other data and approaches. The value of integrating approaches is especially high when the underlying genetic signal is relatively weak, as occurs in many marine species. Recently, studies combining genetic, oceanographic, behavioural and modelling approaches have provided new insights into the spatial ecology of marine populations, in particular regarding larval migration, barriers to dispersal and source-sink population dynamics. In this perspectives piece, we explore the advantages of a multidisciplinary approach to marine population genetics by (i) providing a synthesis of what has been learned about connectivity from studies that combine genetic data with other tools, (ii) discussing how incorporation of ecological and oceanographic information into alternative hypotheses can boost inference when genetic power is low, and (iii) summarizing recent innovations in statistical population genetics that enable seamless integration of ecological, environmental and genetic data. These topics are covered in the context of how genetic inferences of connectivity and dispersal can contribute to pressing questions facing marine conservation and management. [source] Differential effects of elevated nutrient and sediment inputs on survival, growth and biomass of a common larval fish species (Dorosoma cepedianum)FRESHWATER BIOLOGY, Issue 3 2010MARÍA J. GONZÁLEZ Summary 1. Elevated allochthonous inputs of nutrients and sediments to aquatic ecosystems are associated with eutrophication and sedimentation. Reservoirs receive substantial subsidies of nutrients and sediments from catchments due to their large catchment : lake area ratios. We examined the effect of elevated subsidies of sediments and/or dissolved nutrients on the success (survival, growth, biomass and condition factor) of larval gizzard shad (Dorosoma cepedianum), a widespread and dominant omnivorous fish in reservoir ecosystems. 2. We simulated allochthonous agricultural subsides by manipulating dissolved nutrients and sediment inputs in a 2 × 2 factorial design in experimental mesocosms. We predicted that larval fish success would be greater under elevated nutrients. However, we propose two alternative hypotheses with respect to the overall effect of allochthonous sediment inputs. If sediment inputs negatively affect larval gizzard feeding success, larval success would be highest when only nutrients are added and lowest when only sediments are added (+N > +N+S , C > +S). If high turbidity enhances larval foraging activity (due to greater contrast between prey and background), we predict that larval success would be highest when both subsidy types (nutrients and sediment) are elevated, intermediate when either nutrients or sediments are added and the lowest when no subsidies are added (+N+S > +N , +S > C). 3. Our results indicate that elevated nutrient and sediment conditions enhanced larval gizzard shad biomass, but the overall nutrient addition effect was greater than the sediment addition effect (+N , +N+S > +S > C). We observed differential effects of nutrient and sediment inputs on larval survival, growth and condition factors. 4. The enhancement of fish biomass in elevated nutrients (+N, +N+S) relative to control conditions was associated with improved gizzard shad survival and not greater growth. The enhancement of fish biomass in the elevated sediment treatment (+S) relative to the control conditions was caused by an increase in survival that more than compensated for a negative effect of sediment addition on growth. 5. Our findings support the recommendation that reservoir management practices must consider the links between land use practices and food web dynamics. Our results suggest that reduction of subsidies of nutrients and sediments to productive reservoirs would decrease survival of larval gizzard shad due to lower food availability. [source] A statistical method for scanning the genome for regions with rare disease allelesGENETIC EPIDEMIOLOGY, Issue 5 2010Chad GarnerArticle first published online: 21 JUN 2010 Abstract Studying the role of rare alleles in common disease has been prevented by the impractical task of determining the DNA sequence of large numbers of individuals. Next-generation DNA sequencing technologies are being developed that will make it possible for genetic studies of common disease to study the full frequency spectrum of genetic variation, including rare alleles. This report describes a method for scanning the genome for disease susceptibility regions that show an increased number of rare alleles among a sample of disease cases versus an ethnically matched sample of controls. The method was based on a hidden Markov model and the statistical support for a disease susceptibility region characterized by rare alleles was measured by a likelihood ratio statistic. Due to the lack of empirical data, the method was evaluated through simulation. The performance of the method was tested under the null and alternative hypotheses under a range of sequence generating and hidden Markov models parameters. The results showed that the statistical method performs well at identifying true disease susceptibility regions and that performance was primarily affected by the amount of variation in the neutral sequence and the number of rare disease alleles found in the disease susceptibility region. Genet. Epidemiol. 34: 386,395, 2010. © 2010 Wiley-Liss, Inc. [source] Examining the statistical properties of fine-scale mapping in large-scale association studiesGENETIC EPIDEMIOLOGY, Issue 3 2008Steven Wiltshire Abstract Interpretation of dense single nucleotide polymorphism (SNP) follow-up of genome-wide association or linkage scan signals can be facilitated by establishing expectation for the behaviour of primary mapping signals upon fine-mapping, under both null and alternative hypotheses. We examined the inferences that can be made regarding the posterior probability of a real genetic effect and considered different disease-mapping strategies and prior probabilities of association. We investigated the impact of the extent of linkage disequilibrium between the disease SNP and the primary analysis signal and the extent to which the disease gene can be physically localised under these scenarios. We found that large increases in significance (>2 orders of magnitude) appear in the exclusive domain of genuine genetic effects, especially in the follow-up of genome-wide association scans or consensus regions from multiple linkage scans. Fine-mapping significant association signals that reside directly under linkage peaks yield little improvement in an already high posterior probability of a real effect. Following fine-mapping, those signals that increase in significance also demonstrate improved localisation. We found local linkage disequiliptium patterns around the primary analysis signal(s) and tagging efficacy of typed markers to play an important role in determining a suitable interval for fine-mapping. Our findings help inform the interpretation and design of dense SNP-mapping follow-up studies, thus facilitating discrimination between a genuine genetic effect and chance fluctuation (false positive). Genet. Epidemiol. 2007. © 2007 Wiley-Liss, Inc. [source] International Intervention and the Severity of Genocides and PoliticidesINTERNATIONAL STUDIES QUARTERLY, Issue 3 2005Matthew Krain This study examines the effectiveness of overt military intervention in slowing or stopping the killing during ongoing instances of genocide or politicide. Six alternative hypotheses regarding the potential effects of intervention on genocide/politicide severity are tested in a cross-national longitudinal analysis of all ongoing genodices or politicides from 1995 to 1997. The results suggest that interventions that directly challenge the perpetrator or aid the target of the brutal policy are the only effective type of military responses, increasing the probability that the magnitude of the slaughter can be slowed or stopped. Impartial interventions seem to be ineffective at reducing severity, and interventions to challenge the perpetrator do not make matters worse for the targets of genocide or politicide. The findings are consistent with recent arguments that attempts to prevent or alleviate mass killings should focus on opposing, restraining, or disarming perpetrators and/or removing them from power. [source] Did Futures Markets Stabilise US Grain Prices?JOURNAL OF AGRICULTURAL ECONOMICS, Issue 1 2002Joseph Santos Though economists are divided over whether, in practice, futures markets reduce spot price volatility, observers of nascent nineteenth century US futures markets essentially praised the stabilising effects of this financial innovation. Indeed, such praise is understandable, particularly if, as the Chicago Board of Trade (CBOT) and others assert, "violent" spot price fluctuations were common prior to, but not after, the 1870s; the same decade that grain trade historians typically associate with the birth of the modern futures contract. And whereas these events may be unrelated, the claim is intriguing because it requires that nineteenth century futures prices fulfil their price discovery function, a property that many modern futures markets do not possess. This paper explores what role, if any, the advent of futures trading may have had on spot price volatility. I corroborate the CBOT's assertion regarding diminished spot price volatility around the 1870s and show that early futures prices did indeed fulfil their price discovery function. Moreover, I address two alternative hypotheses that relate the decline in spot price volatility to the Civil War. Ultimately, I maintain that the evolution of futures markets is the principal proximate reason why commodity spot price volatility diminished. [source] Habitat structure mediates predation risk for sedentary prey: experimental tests of alternative hypothesesJOURNAL OF ANIMAL ECOLOGY, Issue 3 2009Anna D. Chalfoun Summary 1Predation is an important and ubiquitous selective force that can shape habitat preferences of prey species, but tests of alternative mechanistic hypotheses of habitat influences on predation risk are lacking. 2We studied predation risk at nest sites of a passerine bird and tested two hypotheses based on theories of predator foraging behaviour. The total-foliage hypothesis predicts that predation will decline in areas of greater overall vegetation density by impeding cues for detection by predators. The potential-prey-site hypothesis predicts that predation decreases where predators must search more unoccupied potential nest sites. 3Both observational data and results from a habitat manipulation provided clear support for the potential-prey-site hypothesis and rejection of the total-foliage hypothesis. Birds chose nest patches containing both greater total foliage and potential nest site density (which were correlated in their abundance) than at random sites, yet only potential nest site density significantly influenced nest predation risk. 4Our results therefore provided a clear and rare example of adaptive nest site selection that would have been missed had structural complexity or total vegetation density been considered alone. 5Our results also demonstrated that interactions between predator foraging success and habitat structure can be more complex than simple impedance or occlusion by vegetation. [source] Spatial abundance structures in an assemblage of gall-forming sawfliesJOURNAL OF ANIMAL ECOLOGY, Issue 3 2004M. A. McGeoch Summary 1Examination of the fine-scale internal structure of species geographical ranges, and interspecific variation therein across landscapes, contributes to a more comprehensive understanding of the structure of geographical ranges. Two components of this internal structure that require further examination are the occurrence, extent and position of spatial autocorrelation, and relationships between the spatial abundance structures of closely related, ecologically similar species. 2Here we compare the abundance structures of an assemblage of gall-forming sawflies (Tenthredinidae) across a landscape. We identify the relative roles of spatial and non-spatial factors in explaining their abundance structures and test the hypothesis that sawfly density is explained by host plant quality, as has been demonstrated repeatedly at finer scales. We use these results to distinguish between alternative sets of mechanisms that may be operating at the landscape scale. 3Species densities were mainly multimodal across the landscape and significantly spatially structured, with patch, periodic and trend components. The abundance structures thus mimic those found generally for species across the full extent of their geographical ranges. 4Many abundance structure characteristics were unique to species, with differences in their correlogram profiles, distances over which densities were positively autocorrelated, and the absence of significant spatial structure in one species. 5In contrast to previous, fine-scale studies, host plant quality explained little of the variation in sawfly gall density across the landscape, whereas unexplained spatial structure contributed between 30% and 50%. Based on knowledge of the biology of these species and the absence of competitive interactions, species dispersal characteristics and the Moran effect are suggested as probable alternative hypotheses at this scale. 6Therefore, a spatial approach has identified the hierarchical nature of mechanisms underlying the population dynamics of this sawfly assemblage for the first time. Furthermore, it has highlighted the importance of spatial processes in explaining the densities of species at the landscape scale, as well as the individualistic nature of their abundance structures. [source] | |||||||||||||||||||||||||||||||||||||||||||||||||