Home About us Contact
|
Home About us Contact | ||
|
|
||
Allozyme Variation (allozyme + variation)
Selected AbstractsFitness differences associated with Pgi SNP genotypes in the Glanville fritillary butterfly (Melitaea cinxia)JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 2 2009L. ORSINI Abstract Allozyme variation at the phosphoglucose isomerase (PGI) locus in the Glanville fritillary butterfly (Melitaea cinxia) is associated with variation in flight metabolic rate, dispersal rate, fecundity and local population growth rate. To map allozyme to DNA variation and to survey putative functional variation in genomic DNA, we cloned the coding sequence of Pgi and identified nonsynonymous variable sites that determine the most common allozyme alleles. We show that these single-nucleotide polymorphisms (SNPs) exhibit significant excess of heterozygotes in field-collected population samples as well as in laboratory crosses. This is in contrast to previous results for the same species in which other allozymes and SNPs were in Hardy,Weinberg equilibrium or exhibited an excess of homozygotes. Our results suggest that viability selection favours Pgi heterozygotes. Although this is consistent with direct overdominance at Pgi, we cannot exclude the possibility that heterozygote advantage is caused by the presence of one or more deleterious alleles at linked loci. [source] THE HISTORICAL BIOGEOGRAPHY OF TWO CARIBBEAN BUTTERFLIES (LEPIDOPTERA: HELICONIIDAE) AS INFERRED FROM GENETIC VARIATION AT MULTIPLE LOCIEVOLUTION, Issue 3 2002Neil Davies Abstract Mitochondrial DNA and allozyme variation was examined in populations of two Neotropical butterflies, Heliconius charithonia and Dryas iulia. On the mainland, both species showed evidence of considerable gene flow over huge distances. The island populations, however, revealed significant genetic divergence across some, but not all, ocean passages. Despite the phylogenetic relatedness and broadly similar ecologies of these two butterflies, their intraspecific biogeography clearly differed. Phylogenetic analyses of mitochondrial DNA sequences revealed that populations of D. iulia north of St. Vincent are monophyletic and were probably derived from South America. By contrast, the Jamaican subspecies of H. charithonia rendered West Indian H. charithonia polyphyletic with respect to the mainland populations; thus, H. charithonia seems to have colonized the Greater Antilles on at least two separate occasions from Central America. Colonization velocity does not correlate with subsequent levels of gene flow in either species. Even where range expansion seems to have been instantaneous on a geological timescale, significant allele frequency differences at allozyme loci demonstrate that gene flow is severely curtailed across narrow ocean passages. Stochastic extinction, rapid (re)colonization, but low gene flow probably explain why, in the same species, some islands support genetically distinct and nonexpanding populations, while nearby a single lineage is distributed across several islands. Despite the differences, some common biogeographic patterns were evident between these butterflies and other West Indian taxa; such congruence suggests that intraspecific evolution in the West Indies has been somewhat constrained by earth history events, such as changes in sea level. [source] Variability of tilapias (Oreochromis spp.) introduced in Mexico: morphometric, meristic and genetic charactersJOURNAL OF APPLIED ICHTHYOLOGY, Issue 1 2004I. D. L. A. Barriga-Sosa Summary In Mexico, the tilapia Oreochromis provides one of the most important sources of animal protein and income in a wide variety of communities throughout the country, however, their culture and production face severe problems because of lack of management information. Evaluated in the present study is the degree of morphological, meristic and allozyme variation of two tilapia strains, two species and one hybrid from two important reservoirs in Mexico, two tilapia fry production farms (TFPF) and an experimental production system (EPS), to diagnose the actual status and degree of variation among them. Twenty-two presumptive loci were utilized to determine the genetic variation, structuring and distances among samples. Multivariate analyses of 11 meristic and 33 morphometric characters were also evaluated, including the distance from the end of the mouth opening to the most anterior dorsal fin (0.9894), distance from the anal fin base to the anterior part of the caudal fin (0.9845) and the base length of the dorsal fin (0.9839) which contributed to the separation of groups. The canonical discriminant functions for the morphometric and meristic variables show that the correct classification of the organisms in percentages and in the sites of origin was on average 72%. The tilapia from the reservoirs and the experimental production system had higher genetic variations than tilapia from the fry production farms (average He 0.310, 0.062, 0.151 for Metztitlan, Infiernillo and EPS, respectively, vs 0.024 and 0.000 for Los Amates and Zacatepec, respectively). The genetic data indicate that fishes of the TFPF should be monitored closely, as they are the main source of dispersion to the reservoirs. Present results show that these data could be a fast and reliable aid to the fisheries and management of tilapia in Mexico. [source] Effects of ecogeographic variables on genetic variation in montane mammals: implications for conservation in a global warming scenarioJOURNAL OF BIOGEOGRAPHY, Issue 7 2007Amy M. Ditto Abstract Aim, Evolutionary theory predicts that levels of genetic variation in island populations will be positively correlated with island area and negatively correlated with island isolation. These patterns have been empirically established for oceanic islands, but little is known about the determinants of variation on habitat islands. The goals of this study were twofold. Our first aim was to test whether published patterns of genetic variation in mammals occurring on montane habitat islands in the American Southwest conformed to expectations based on evolutionary theory. The second aim of this research was to develop simple heuristic models to predict changes in genetic variation that may occur in these populations as a result of reductions in available mountaintop habitat in response to global warming. Location, Habitat islands of conifer forest on mountaintops in the American Southwest. Methods, Relationships between island area and isolation with measures of allozyme variation in four species of small mammal, namely the least chipmunk (Tamias minimus), Colorado chipmunk (Tamias quadrivittatus), red squirrel (Tamiasciurus hudsonicus), and Mexican woodrat (Neotoma mexicana), were determined using correlation and regression techniques. Significant relationships between island area and genetic variation were used to develop three distinct statistical models with which to predict changes in genetic variation following reduction in insular habitat area arising from global warming. Results, Patterns of genetic variation in each species conformed to evolutionary predictions. In general, island area was the most important determinant of heterozygosity, while island isolation was the most important determinant of polymorphism and allelic diversity. The heuristic models predicted widespread reductions in genetic variation, the extent of which depended on the population and model considered. Main conclusions, The results support a generalized pattern of genetic variation for any species with an insular distribution, with reduced variation in smaller, more isolated populations. We predict widespread reductions in genetic variation in isolated populations of montane small mammals in the American Southwest as a result of global warming. We conclude that climate-induced reductions in the various dimensions of genetic variation may increase the probability of population extinction in both the short and long term. [source] Gene diversity in a fragmented population of Briza media: grassland continuity in a landscape contextJOURNAL OF ECOLOGY, Issue 1 2006HONOR C. PRENTICE Summary 1We investigated patterns of allozyme variation in demes of the grass Briza media in semi-natural grassland fragments within a mosaic agricultural landscape on the Baltic island of Öland. In the study area, Briza is both a characteristic species of old pastures and an early colonizer of young grasslands developing on previously forested or arable sites. 2Generalized linear models revealed that descriptors of both present landscape structure and past grassland history are significant determinants of genetic variation in the Briza demes. Genetic structure and levels of within-deme diversity are influenced by the size of grassland fragments, the type of habitat surrounding the grasslands, the size/spatial extent of the demes, the geographic position of the demes and the historical continuity of the grassland fragments. 3Gene diversity (H) was higher in demes from grassland polygons with a high proportion of adjacent grassland, higher in the more extensive demes, and decreased northwards within the study area. 4The negative association between the inbreeding coefficient (FIS) and grassland continuity is interpreted in terms of a two-stage colonization process: recruitment into young grasslands leads initially to spatial patchiness, but subsequent selection in maturing pastures occurs within an increasingly uniform and dense sward. 5Despite a weak overall genetic structure (as indicated by Bayesian cluster analysis) the between-deme FST was significant. Linear discriminant analysis of within-deme allele frequencies grouped the demes according to the age and previous land-use history of their grassland polygons. The convergence of the allele frequency profiles in the younger grasslands towards those of the old grasslands is consistent with convergence of selective regimes as pastures mature towards an increasingly uniform, dense sward and characteristic species assemblage. 6The genetic composition of demes of a grassland species appears to be influenced by the process of plant community convergence during grassland development , complementing the recent finding that convergence of species composition in experimental assemblages of grassland plants is dependent on the genotypic composition of the component species. [source] Mating system and genetic diversity of a rare desert legume Ammopiptanthus nanus (Leguminosae)JOURNAL OF SYSTEMATICS EVOLUTION, Issue 1 2009Guo-Qing CHEN Abstract Ammopiptanthus nanus is an endangered evergreen shrub endemic to the deserts of central Asia and plays an important role in delaying further desertification. We examined allozyme variation and AFLP diversity in A. nanus populations and investigated the mating system of this species using progeny arrays assayed for polymorphic allozyme loci. Mating system analysis in the Keyi'eryongke'er population showed low levels of out-crossing, and strong inbreeding depression. Low levels of genetic variation were detected at both population (allozyme, Pp= 14.0%, A= 1.14, He= 0.031; AFLP, Pp= 14.5%, Shannon's information index I= 0.063) and species (allozyme, Pp= 21.1%, A= 1.21, He= 0.040; AFLP, Pp= 20.9%, I= 0.083) levels; while moderate genetic differentiation existed among populations, as indicated by allozymes (GST= 0.081) and AFLP (GST= 0.151,0.193). Founder effect, bottlenecks in evolutionary history, the mixed mating system and co-ancestry may have influenced the level of genetic diversity in A. nanus. Markers of both types provide new insights for conservation management, indicating that the Biao'ertuokuoyi and Keyi'eryongke'er populations should be given priority for in situ conservation and regarded as seed sources for ex situ conservation. [source] Genetic structure of the widespread and common Mediterranean bryophyte Pleurochaete squarrosa (Brid.) Lindb. (Pottiaceae) , evidence from nuclear and plastidic DNA sequence variation and allozymesMOLECULAR ECOLOGY, Issue 4 2007MICHAEL GRUNDMANN Abstract The Mediterranean Basin as one the world's most biologically diverse regions provides an interesting area for the study of plant evolution and spatial structure in plant populations. The dioecious moss Pleurochaete squarrosa is a widespread and common bryophyte in the Mediterranean Basin. Thirty populations were sampled for a study on molecular diversity and genetic structure, covering most major islands and mainland populations from Europe and Africa. A significant decline in nuclear and chloroplast sequence and allozyme variation within populations from west to east was observed. While DNA sequence data showed patterns of isolation by distance, allozyme markers did not. Instead, their considerable interpopulation genetic differentiation appeared to be unrelated to geographic distance. Similar high values for coefficients of gene diversity (GST) in all data sets provided evidence of geographic isolation and limited gene flow among populations (i) within islands, (ii) within mainland areas, and (iii) between islands and mainland. Notably, populations in continental Spain are strongly genetically isolated from all other investigated areas. Surprisingly, there was no difference in gene diversity and GST between islands and mainland areas. Thus, we conclude that large Mediterranean islands may function as ,mainland' for bryophytes. This hypothesis and its implication for conservation biology of cryptogamic plants warrant further investigation. While sexually reproducing populations were found all over the Mediterranean Basin, high levels of multilocus linkage disequilibrium provide evidence of mainly vegetative propagation even in populations where sexual reproduction was observed. [source] Temperature-mediated seasonal variation in phosphoglucomutase allozyme frequency in the yellow dung fly, Scathophaga stercorariaMOLECULAR ECOLOGY, Issue 10 2004P. I. WARD Abstract The allozyme genetic variability of various species is correlated with a variety of morphological, physiological and fitness-related traits. In particular, temperature can affect the fitness of insects through its influence on enzyme function. We examined the seasonal (12 days over 1 year) and daily (nine samples over each day) allozyme variation at the phosphoglucomutase (PGM) locus in one population of yellow dung flies (Scathophaga stercoraria; Diptera: Scathophagidae). PGM is of central functional importance in the mobilization of glycogen reserves for flight, and has been shown to affect larval growth at different temperatures in the laboratory. Based on a sample of over 3000 flies, we found a quadratic relationship, with a minimum at ~12 °C, between the frequency of the most common allele and temperature, primarily mediated by seasonal temperature variation. This could be caused by behavioural responses over the short-term, but over the year either variable viability or sexual selection probably operates on this locus, maintaining the existing polymorphism. These results call for further work on the functional differences between PGM allozyme genotypes. [source] Microsatellite DNA markers for the study of horseshoe crab (Limulus polyphemus) population structureMOLECULAR ECOLOGY RESOURCES, Issue 3 2004TIM L. KING Abstract Twenty-two microsatellite DNA loci were identified and characterized for horseshoe crabs (Limulus polyphemus) collected from two Atlantic coast and one Gulf of Mexico site. These markers revealed a high degree of genetic diversity (8,35 alleles per locus), heterozygosity (25.0% to 100.0%), and allelic heterogeneity (69.8% of comparisons). Considerable regional differentiation was observed as genetic distances (chord) ranged between 0.25 and 0.45, and all FST values (0.014,0.092) were significant. These preliminary findings are consistent with patterns of regional differentiation observed using allozyme variation and contradictory to findings of limited gene flow reported for sequence variation at the mitochondrial DNA COI region. [source] Morphological and genetic differentiation in Isodon umbrosus by altitudinal variation in bumblebee pollinator assemblagesPLANT SPECIES BIOLOGY, Issue 1 2010IKUMI DOHZONO Abstract The corolla tube length of the bumblebee-pollinated plant Isodon umbrosus shows conspicuous geographical variation, corresponding with the proboscis length of its bumblebee pollinators across its distributional range. We hypothesized that altitudinal variation in the pollinator assemblage is a principal factor mediating morphological and genetic differentiation among I. umbrosus populations. We examined determinants of the morphological and genetic differentiation of Isodon umbrosus by analyzing floral morphology and allozyme variation across the distributional range. A reanalysis of previous data confirmed that altitude was a good indicator of pollinator assemblages. Corolla tube length was highly variable among the 15 study populations, and genetic differentiation among the populations (GST = 0.360) was also highly significant. The differentiation in corolla tube length was explained by altitudinal difference, a proxy of the difference in pollinator assemblages. Genetic differentiation among populations also tended to be affected by the same factor, but statistical support was weak. To better understand the mechanisms responsible for morphological and genetic differentiation in I. umbrosus, we need to investigate altitudinally different populations over a narrower geographical scale. [source] Determining the species status of one of the world's rarest frogs: a conservation dilemmaANIMAL CONSERVATION, Issue 1 2001Andrew Holyoake New Zealand's native frogs (genus Leiopelma) are considered to be archaic amphibians of exceptional scientific interest that appear to have remained virtually unchanged for 160-200 million years. They are among the rarest extant amphibians and are highly restricted in distribution, confined to isolated, highly disjunct, populations on the North Island and a few small offshore islands in Cook Strait. Previous investigations have suggested, based on patterns of allozyme variation, that the Stephens Island frog (Leiopelma hamiltoni) and Archey's frog (L. archeyi) are sister taxa to the exclusion of the Maud Island frog, a species in close geographical proximity to the Stephens Island frog and previously viewed as a population of this species. As a consequence of these data, a new species, L. pakeka, the Maud Island Frog, has been described. This new species definition has dramatically enhanced the conservation status of L. hamiltoni, of which there are probably fewer than 150 individuals. In this study we re-examine the systematics of the Leiopelmatidae using mtDNA sequence analyses. Partial 12 S ribosomal RNA and cytochrome b (Cyt b) gene sequences were obtained for 57 frogs from six populations representing all four extant Leiopelma species. Contrary to previous reports we find L. pakeka and L. hamiltoni to be monophyletic. The amount of variation evident between these present species (<1% for Cyt b) is comparable to that seen between populations of L. archeyi. Based on these data, classification of L. pakeka and L. hamiltoni as separate species appears to be unwarranted, but they may be sufficiently distinct to warrant classification as evolutionarily significant units. [source] Low population differentiation and high genetic diversity in the invasive species Carduus acanthoides L. (Asteraceae) within its native range in the Czech RepublicBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 3 2009BOHUMIL MANDÁK Colonizing species are predicted to suffer from reductions in genetic diversity during founding events. Although there is no unique mode of reproduction that is characteristic of successful plant colonizers, many of them are predominantly self-fertilizing or apomictic species, and almost all outcrossing colonizers are self-compatible. Carduus acanthoides comprises a species of disturbed habitats with wind-dispersed seeds that colonizes open spaces of various sizes. Population genetic diversity was expressed by assessing patterns of variation at nine putatively neutral allozyme loci within and among 20 natural populations in its native distribution range in the Czech Republic. Overall, C. acanthoides displayed high levels of genetic diversity compared to other herbaceous plants. The percentage of polymorphic loci was 84.5, with values of 2.37, 0.330, and 0.364 for the mean number of alleles per polymorphic locus (A), observed heterozygosity (Ho), and expected heterozygosity (He), respectively. There was only weak evidence of inbreeding within populations (f = 0.097) and very low genetic differentiation among populations (, = 0.085). Analyses of the data provide strong evidence for isolation-by-distance for the whole study area. Even the colonizing species, C. acanthoides, currently supports a substantial amount of allozyme variation at both the species and population levels. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 98, 596,607. [source] The genetic population structure of Buthus occitanus (Scorpiones: Buthidae) across the Strait of Gibraltar: calibrating a molecular clock using nuclear allozyme variationBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 4 2004BENJAMIN GANTENBEIN I assess here the importance of the Strait of Gibraltar as a barrier to gene flow for populations of the scorpion Buthus occitanus. This polytypic buthid scorpion occurs in Europe and in North Africa where it is morphologically more diverse. The phylogenetic relationship between B. occitanus populations across the Strait of Gibraltar is investigated by nuclear allozymes analysis (15 loci scored). Phylogenetic analysis based on estimated gene frequency data results in a tree topology that divides the populations into three clades, i.e. a European, an Atlas (= Morocco samples) and a Tell-Atlas clade (= Tunisian samples). The Tell-Atlas clade grouped with the European clade with a rather high bootstrap support of 70%. Within these clades low levels of genetic variability are observed. Calibrating a molecular clock under the assumption that the European populations are autochthonous and have been isolated from the North African for at least 5.33 Myr reveals a divergence rate of 0.060 genetic distance (D) per Myr estimated between European and Moroccan samples and 0.036D Myr,1 between European and Tunisian samples, respectively. © 2004 The Linnean Society of London, Biological Journal of the Linnean Society, 2004, 81, 519,534. [source] | ||||||||||