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Functional Relationships (functional + relationships)
Selected AbstractsSeasonal dynamics, dispersion, sequential sampling plans and treatment thresholds for the citrus leafminer, Phyllocnistis citrella Stainton (Lepidoptera: Gracillariidae), in a mature lemon block in coastal New South Wales, AustraliaAUSTRALIAN JOURNAL OF ENTOMOLOGY, Issue 3 2008Zhong Min Liu Abstract, Studies of citrus leafminer in a coastal orchard in NSW, Australia indicated that an increase in abundance to about one mine per flush was followed during the midseason flush by a rapid increase in population that was related to an increase in the percentage of leaves infested within flushes and the number of mines per leaf. The fits of frequency distributions and Iwao's patchiness regression indicated that populations were highly contagious initially, and as the exponent k of the negative binomial distribution increased with increasing population density, the distribution approached random. Concurrently, the coefficient of variation of mines per flush (which was strongly related to the proportion of un-infested flushes) decreased to about unity as the proportion of un-infested flushes reached zero and fell further as the number of mines per flush increased. Both numerative and binomial sequential sampling plans were developed using a decision threshold based on 1.2 mines per flush. The binomial sampling plan was based on a closely fitting model of the functional relationship between mean density and proportion of infested flushes. Functional relationships using the parameters determined from Iwao's patchiness regression and Taylor's power law were equally satisfactory, and one based on the negative binomial model also fitted well, but the Poisson model did not. The three best fitting models indicated that a decision threshold of 1.2 mines per flush was equivalent to 50% of flushes infested. From a practical point of view, the transition from 25% infestation of flushes through 50% is so rapid that it may be prudent to take action when the 25% level is reached; otherwise, the 50% may be passed before the crop is checked again. For valuable nursery stock should infestation be detected in spring, it may be advisable to apply prophylactic treatment as the midseason flush starts. [source] Developmental microRNA expression profiling of murine embryonic orofacial tissueBIRTH DEFECTS RESEARCH, Issue 7 2010Partha Mukhopadhyay Abstract BACKGROUND: Orofacial development is a multifaceted process involving precise, spatio-temporal expression of a panoply of genes. MicroRNAs (miRNAs), the largest family of noncoding RNAs involved in gene silencing, represent critical regulators of cell and tissue differentiation. MicroRNA gene expression profiling is an effective means of acquiring novel and valuable information regarding the expression and regulation of genes, under the control of miRNA, involved in mammalian orofacial development. METHODS: To identify differentially expressed miRNAs during mammalian orofacial ontogenesis, miRNA expression profiles from gestation day (GD) -12, -13 and -14 murine orofacial tissue were compared utilizing miRXplore microarrays from Miltenyi Biotech. Quantitative real-time PCR was utilized for validation of gene expression changes. Cluster analysis of the microarray data was conducted with the clValid R package and the UPGMA clustering method. Functional relationships between selected miRNAs were investigated using Ingenuity Pathway Analysis. RESULTS: Expression of over 26% of the 588 murine miRNA genes examined was detected in murine orofacial tissues from GD-12,GD-14. Among these expressed genes, several clusters were seen to be developmentally regulated. Differential expression of miRNAs within such clusters wereshown to target genes encoding proteins involved in cell proliferation, cell adhesion, differentiation, apoptosis and epithelial-mesenchymal transformation, all processes critical for normal orofacial development. CONCLUSIONS: Using miRNA microarray technology, unique gene expression signatures of hundreds of miRNAs in embryonic orofacial tissue were defined. Gene targeting and functional analysis revealed that the expression of numerous protein-encoding genes, crucial to normal orofacial ontogeny, may be regulated by specific miRNAs. Birth Defects Research (Part A), 2010. © 2010 Wiley-Liss, Inc. [source] Defining and measuring braiding intensityEARTH SURFACE PROCESSES AND LANDFORMS, Issue 14 2008Roey Egozi Abstract Geomorphological studies of braided rivers still lack a consistent measurement of the complexity of the braided pattern. Several simple indices have been proposed and two (channel count and total sinuosity) are the most commonly applied. For none of these indices has there been an assessment of the sampling requirements and there has been no systematic study of the equivalence of the indices to each other and their sensitivity to river stage. Resolution of these issues is essential for progress in studies of braided morphology and dynamics at the scale of the channel network. A series of experiments was run using small-scale physical models of braided rivers in a 3 m , 20 m flume. Sampling criteria for braid indices and their comparability were assessed using constant-discharge experiments. Sample hydrographs were run to assess the effect of flow variability. Reach lengths of at least 10 times the average wetted width are needed to measure braid indices with precision of the order of 20% of the mean. Inherent variability in channel pattern makes it difficult to achieve greater precision. Channel count indices need a minimum of 10 cross-sections spaced no further apart than the average wetted width of the river. Several of the braid indices, including total sinuosity, give very similar numerical values but they differ substantially from channel-count index values. Consequently, functional relationships between channel pattern and, for example, discharge, are sensitive to the choice of braid index. Braid indices are sensitive to river stage and the highest values typically occur below peak flows of a diurnal (melt-water) hydrograph in pro-glacial rivers. There is no general relationship with stage that would allow data from rivers at different relative stage to be compared. At present, channel count indices give the best combination of rapid measurement, precision, and range of sources from which measurements can be reliably made. They can also be related directly to bar theory for braided pattern development. Copyright © 2008 John Wiley & Sons, Ltd. [source] The Dependence of Growth-Model Results on Proficiency Cut ScoresEDUCATIONAL MEASUREMENT: ISSUES AND PRACTICE, Issue 4 2009Andrew D. Ho States participating in the Growth Model Pilot Program reference individual student growth against "proficiency" cut scores that conform with the original No Child Left Behind Act (NCLB). Although achievement results from conventional NCLB models are also cut-score dependent, the functional relationships between cut-score location and growth results are more complex and are not currently well described. We apply cut-score scenarios to longitudinal data to demonstrate the dependence of state- and school-level growth results on cut-score choice. This dependence is examined along three dimensions: 1) rigor, as states set cut scores largely at their discretion, 2) across-grade articulation, as the rigor of proficiency standards may vary across grades, and 3) the time horizon chosen for growth to proficiency. Results show that the selection of plausible alternative cut scores within a growth model can change the percentage of students "on track to proficiency" by more than 20 percentage points and reverse accountability decisions for more than 40% of schools. We contribute a framework for predicting these dependencies, and we argue that the cut-score dependence of large-scale growth statistics must be made transparent, particularly for comparisons of growth results across states. [source] Hypolithic community shifts occur as a result of liquid water availability along environmental gradients in China's hot and cold hyperarid desertsENVIRONMENTAL MICROBIOLOGY, Issue 2 2007Stephen B. Pointing Summary Hypolithic cyanobacterial communities occur in hot and cold hyperarid environments but the physical factors determining their diversity are not well understood. Here we report hypolithic diversity and colonization of a common quartz substrate at several hyperarid locations in the ancient deserts of north-western China, that experience varying mean annual temperature, rainfall and concomitant availability of liquid water in soil. Microscopy and enrichment culture resulted only in Chroococcidiopsis morphotypes which were ubiquitous, but community phylogenetic analysis revealed considerable cyanobacterial and heterotrophic bacterial diversity. Species Richness and Shannon's Diversity Index displayed a significant positive linear correlation with availability of liquid water but not temperature or rainfall alone. Several taxonomic groups occurred only in specific climatically defined locations, while for Chroococcidiopsis, Deinococcus and Phormidium location specific lineages within these genera were also evident. Multivariate analysis was used to illustrate pronounced community shifts due to liquid water availability, although these did not significantly affect the predicted functional relationships within any given assemblage in either hot or cold, wet or dry hyperarid deserts. This study clearly demonstrates that availability of liquid water, rather than temperature or rainfall per se is the key determinant of hypolithic diversity in hyperarid locations, and furthermore that functionally similar yet taxonomically distinct communities occur, characterized by the presence of taxa that are specific to defined levels of aridity. [source] CROSS-GENERATIONAL ENVIRONMENTAL EFFECTS AND THE EVOLUTION OF OFFSPRING SIZE IN THE TRINIDADIAN GUPPY POECILIA RETICULATAEVOLUTION, Issue 2 2006Farrah Bashey Abstract The existence of adaptive phenotypic plasticity demands that we study the evolution of reaction norms, rather than just the evolution of fixed traits. This approach requires the examination of functional relationships among traits not only in a single environment but across environments and between traits and plasticity itself. In this study, I examined the interplay of plasticity and local adaptation of offspring size in the Trinidadian guppy, Poecilia reticulata. Guppies respond to food restriction by growing and reproducing less but also by producing larger offspring. This plastic difference in offspring size is of the same order of magnitude as evolved genetic differences among populations. Larger offspring sizes are thought to have evolved as an adaptation to the competitive environment faced by newborn guppies in some environments. If plastic responses to maternal food limitation can achieve the same fitness benefit, then why has guppy offspring size evolved at all? To explore this question, I examined the plastic response to food level of females from two natural populations that experience different selective environments. My goals were to examine whether the plastic responses to food level varied between populations, test the consequences of maternal manipulation of offspring size for offspring fitness, and assess whether costs of plasticity exist that could account for the evolution of mean offspring size across populations. In each population, full-sib sisters were exposed to either a low- or high-food treatment. Females from both populations produced larger, leaner offspring in response to food limitation. However, the population that was thought to have a history of selection for larger offspring was less plastic in its investment per offspring in response to maternal mass, maternal food level, and fecundity than the population under selection for small offspring size. To test the consequences of maternal manipulation of offspring size for offspring fitness, I raised the offspring of low- and high-food mothers in either low- or high-food environments. No maternal effects were detected at high food levels, supporting the prediction that mothers should increase fecundity rather than offspring size in noncompetitive environments. For offspring raised under low food levels, maternal effects on juvenile size and male size at maturity varied significantly between populations, reflecting their initial differences in maternal manipulation of offspring size; nevertheless, in both populations, increased investment per offspring increased offspring fitness. Several correlates of plasticity in investment per offspring that could affect the evolution of offspring size in guppies were identified. Under low-food conditions, mothers from more plastic families invested more in future reproduction and less in their own soma. Similarly, offspring from more plastic families were smaller as juveniles and female offspring reproduced earlier. These correlations suggest that a fixed, high level of investment per offspring might be favored over a plastic response in a chronically low-resource environment or in an environment that selects for lower reproductive effort [source] Evolving modular networks with genetic algorithms: application to nonlinear time seriesEXPERT SYSTEMS, Issue 4 2004A.S. Cofiño Abstract: A key problem of modular neural networks is finding the optimal aggregation of the different subtasks (or modules) of the problem at hand. Functional networks provide a partial solution to this problem, since the inter-module topology is obtained from domain knowledge (functional relationships and symmetries). However, the learning process may be too restrictive in some situations, since the resulting modules (functional units) are assumed to be linear combinations of selected families of functions. In this paper, we present a non-parametric learning approach for functional networks using feedforward neural networks for approximating the functional modules of the resulting architecture; we also introduce a genetic algorithm for finding the optimal intra-module topology (the appropriate balance of neurons for the different modules according to the complexity of their respective tasks). Some benchmark examples from nonlinear time-series prediction are used to illustrate the performance of the algorithm for finding optimal modular network architectures for specific problems. [source] Functional diversity of crustacean zooplankton communities: towards a trait-based classificationFRESHWATER BIOLOGY, Issue 5 2007ALLAIN J. BARNETT Summary 1. While studies of phytoplankton and terrestrial plant communities have increasingly emphasised the use of functional traits in ecological research, few have yet to apply this approach to zooplankton communities. 2. This study reviews laboratory and observational studies on zooplankton feeding and life history and provides a series of functional trait tables for the North American freshwater zooplankton. Qualitative and quantitative trait tables highlight areas where data were more scarce and point to which types of studies could fill in gaps in our knowledge of zooplankton niches. 3. Data were most complete for the Cladocera across most traits, while feeding information for cyclopoids was most sparse. Qualitative data that distinguished congeneric species were lacking for most groups. 4. A regional community dendrogram for common north-eastern North American zooplankton species was generated and shows that taxonomic differences between species do not capture fully functional differences based on the traits of body length, habitat, trophic group and feeding type. 5. The data collected here, combined with readily measurable species attributes, can be used to generate a multivariate measure of the functional niche of each species found in a community. Armed with this information, functional relationships that are useful for ecological studies of lake ecosystems can be more easily conducted. [source] Stem hydraulics mediates leaf water status, carbon gain, nutrient use efficiencies and plant growth rates across dipterocarp speciesFUNCTIONAL ECOLOGY, Issue 4 2009Jiao-Lin Zhang Summary 1Stem vascular system strongly influences structure and functioning of leaves, life-history, and distribution of plants. Xylem structure and hydraulic conductivity of branches, leaf functional traits, and growth rates in 17 dipterocarp species in a mature plantation stand were examined to explore the functional relationships between these traits. 2Maximum hydraulic conductivity on the bases of both sapwood and leaf area (kL) were positively correlated with midday leaf water potential in the rainy season, stomatal conductance, area-based maximum photosynthetic rate, photosynthetic N (PNUE) and P use efficiencies (PPUE), and mean height and diameter growth rates. Moreover, kL was positively correlated with mesophyll thickness and mass-based maximum photosynthetic rate. These results revealed the mechanistic linkage between stem hydraulics and leaf photosynthesis through nutrient use efficiency and mesophyll development of leaves. 3A detrended correspondence analysis (DCA) using 37 traits showed that the traits related to stem hydraulics and leaf carbon gain were loaded on the first axis whereas traits related to light harvesting were loaded on the second axis, indicating that light harvesting is a distinct ecological axis for tropical canopy plants. The DCA also revealed a trade-off between photosynthetic water use efficiency and hydraulic conductivity along with PNUE and PPUE. 4The congeneric species were scattered fairly close together on the DCA diagram, indicating that the linkages between stem hydraulics, leaf functional traits, and plant growth rates are phylogenetically conserved. 5These results suggest that stem hydraulics mediates leaf water status, carbon gain, nutrient use efficiencies, and growth rates across the dipterocarp species. The wide variation in functional traits and growth rates among these dipterocarp species along with the trade-offs mentioned above provide a possible explanation for their co-existence in tropical forest communities. [source] Phase precession and phase-locking of hippocampal pyramidal cellsHIPPOCAMPUS, Issue 3 2001Amitabha Bose Abstract We propose that the activity patterns of CA3 hippocampal pyramidal cells in freely running rats can be described as a temporal phenomenon, where the timing of bursts is modulated by the animal's running speed. With this hypothesis, we explain why pyramidal cells fire in specific spatial locations, and how place cells phase-precess with respect to the EEG theta rhythm for rats running on linear tracks. We are also able to explain why wheel cells phase-lock with respect to the theta rhythm for rats running in a wheel. Using biophysically minimal models of neurons, we show how the same network of neurons displays these activity patterns. The different rhythms are the result of inhibition being used in different ways by the system. The inhibition is produced by anatomically and physiologically diverse types of interneurons, whose role in controlling the firing patterns of hippocampal cells we analyze. Each firing pattern is characterized by a different set of functional relationships between network elements. Our analysis suggests a way to understand these functional relationships and transitions between them. Hippocampus 2001;11:204,215. © 2001 Wiley-Liss, Inc. [source] Effect of growing watershed imperviousness on hydrograph parameters and peak dischargeHYDROLOGICAL PROCESSES, Issue 13 2008Huang-jia Huang Abstract An increasing impervious area is quickly extending over the Wu-Tu watershed due to the endless demands of the people. Generally, impervious paving is a major result of urbanization and more recently has had the potential to produce more enormous flood disasters than those of the past. In this study, 40 available rainfall,runoff events were chosen to calibrate the applicable parameters of the models and to determine the relationships between the impervious surfaces and the calibrated parameters. Model inputs came from the outcomes of the block kriging method and the non-linear programming method. In the optimal process, the shuffled complex evolution method and three criteria were applied to compare the observed and simulated hydrographs. The tendencies of the variations of the parameters with their corresponding imperviousness were established through regression analysis. Ten cases were used to examine the established equations of the parameters and impervious covers. Finally, the design flood routines of various return periods were furnished through use of approaches containing a design storm, block kriging, the SCS model, and a rainfall-runoff model with established functional relationships. These simulated flood hydrographs were used to compare and understand the past, present, and future hydrological conditions of the watershed studied. In the research results, the time to peak of flood hydrographs for various storms was diminished approximately from 11 h to 6 h in different decrements, whereas peak flow increased respectively from 127 m3 s,1 to 629 m3 s,1 for different storm intensities. In addition, this study provides a design diagram for the peak flow ratio to help engineers and designers to construct hydraulic structures efficiently and prevent possible damage to human life and property. Copyright © 2007 John Wiley & Sons, Ltd. [source] The terminology and use of species,area relationships: a response to Dengler (2009)JOURNAL OF BIOGEOGRAPHY, Issue 10 2009Samuel M. Scheiner Abstract Dengler (Journal of Biogeography, 2009, 36, 728,744) addresses issues regarding species,area relationships (SARs), but fails to settles those issues. He states that only certain types of sampling schemes should be used to construct SARs, but is not consistent in the criteria that he uses to include some sampling schemes but not others. He argues that a sampling scheme of contiguous plots will be more accurate in extrapolating beyond the sampled area, but logic tells us that a dispersed sampling scheme is likely to be more accurate. Finally, he concludes that the ,true' SAR is a power function, but this conclusion is inconsistent with his results and with the results of others. Rather than defining a narrow framework for SARs, we need to recognize that the relationship between area and species richness is scale- and system-dependent. Different sampling schemes serve different purposes, and a variety of functional relationships are likely to hold. Further theoretical and empirical work is needed to resolve these issues fully. [source] Computational method to assign microbial genes to pathwaysJOURNAL OF CELLULAR BIOCHEMISTRY, Issue S37 2001Matteo Pellegrini Abstract We present techniques that mine fully sequenced microbial genomes for functional relationships between genes. We show that genes related by one of four techniques are more likely to belong to the same cellular pathways. Furthermore, we demonstrate that the pathway of an uncharacterized gene may be inferred from those of its functionally related partners. Therefore, we are now able to assign most of the genes within bacteria to cellular pathways. J. Cell. Biochem. Suppl. 37: 106,109, 2001. © 2002 Wiley-Liss, Inc. [source] The PVT-1 oncogene is a Myc protein target that is overexpressed in transformed cells,JOURNAL OF CELLULAR PHYSIOLOGY, Issue 2 2007Letizia Carramusa The human PVT-1 gene is located on chromosome 8 telomeric to the c-Myc gene and it is frequently involved in the translocations occurring in variant Burkitt's lymphomas and murine plasmacytomas. It has been proposed that PVT-1 regulates c-Myc gene transcription over a long distance. To get new insights into the functional relationships between the two genes, we have investigated PVT-1 and c-Myc expression in normal human tissues and in transformed cells. Our findings indicate that PVT-1 expression is restricted to a relative low number of normal tissues compared to the wide distribution of c-Myc mRNA, whereas the gene is highly expressed in many transformed cell types including neuroblastoma cells that do not express c-Myc. Reporter gene assays were used to dissect the PVT-1 promoter and to identify the region responsible for the elevated expression observed in transformed cells. This region contains two putative binding sites for Myc proteins. The results of transfection experiments in RAT1-MycER cells and chromatin immunoprecipitation (ChIP) assays in proliferating and differentiated neuroblastoma cells indicate that PVT-1 is a downstream target of Myc proteins. J. Cell. Physiol. 213: 511,518, 2007. © 2007 Wiley-Liss, Inc. [source] Identification of genes involved in radiation-induced G1 arrest,JOURNAL OF CHEMOMETRICS, Issue 10-11 2007Giuseppe Musumarra Abstract The advent of microarray gene expression technology permits the simultaneous analysis of the levels of expression of thousands of genes and provides large dataset requiring multivariate analysis tools. Multiple genetic factors may modulate the occurrence and magnitude of the arrest in the G1 phase of the cell cycle following exposure to ionizing radiation in human tumour cell lines. The ability to G1 arrest after exposure to gamma rays and the global gene expression profile, evaluated by cDNA microarray technology, have been reported for the National Cancer Institute (NCI) 60 tumour cell lines panel. The sensitivity of the tumour cell lines to radiations represents an activity fingerprinting that can be correlated by partial least squares (PLS) to the transcriptional profiles of the same cell lines. VIP values obtained by the PLS method are able to detect transcripts relevant to the radiation-induced G1 arrest. High VIP values were obtained for the basal levels of transcripts such as p21/Waf1/Cip1 and MDM2, that are well known for their roles in G1 arrest after irradiation. Novel functional relationships suggested by high VIP values can be investigated experimentally. As an example, in the present study, we report that the transcript for the FLJ11046 protein is induced dose-dependently by gamma-irradiation in a cell line with mutated p53, but not in cell lines with wild-type p53. Moreover specific silencing of FLJ11046 transcript by RNA interference technology results in a block of cell growth. Copyright © 2007 John Wiley & Sons, Ltd. [source] Cannabinoid,vanilloid receptor interactions in pain signalingJOURNAL OF NEUROCHEMISTRY, Issue 2003V. Di Marzo Agents that activate cannabinoid CB1 receptors for marijuana's active principal, THC, or vanilloid VR1 receptors for red chilli peppers' pungent ingredient, capsaicin, modulate pain perception. Stimulation of presynaptic CB1 leads to inhibition of glutamate release in the spinal cord, whereas VR1 stimulation causes release of substance P and CGRP from DRG neurons. VR1 undergoes rapid desensitization by its agonists, which makes VR1-expressing neurons insensitive to subsequent stimulation and results in analgesia. Thus, both CB1 and VR1, which are coexpressed in several spinal and DRG neurons, are targets for analgesic drug development. CB1 and VR1 also share endogenous agonists, namely anandamide, NADA and some of their analogs, and may be regarded as metabotropic and ionotropic receptors for the same family of mediators, with opposing roles in pain perception. The development of ,hybrid' CB1/VR1 agonists as potent analgesics and the functional relationships between CB1 and VR1 in sensory neurons will be discussed. [source] Neural Circuits Regulating Pulsatile Luteinizing Hormone Release in the Female Guinea-Pig: Opioid, Adrenergic and Serotonergic InteractionsJOURNAL OF NEUROENDOCRINOLOGY, Issue 3 2001A. C. Gore Abstract We studied three neurotransmitters involved in the regulation of pulsatile luteinizing hormone (LH) release: opioid peptides, serotonin and norepinephrine, using the ovariectomized guinea-pig. This is an attractive animal model due to the regularity of its LH pulses, enabling any disruptions to be clearly ascertained. In all experiments, a specific agonist or antagonist was administered, either alone or serially to enable detection of interactions, and effects on mean LH concentrations, pulse amplitude and interpulse interval were determined by PULSAR analysis. In the ovariectomized guinea-pig, catecholamines are stimulatory (acting through the ,1 and ,2 but not , receptors, unlike other species), opioids inhibitory and serotonin permissively stimulatory to pulsatile LH release. Stimulatory effects of the opiate antagonist were not blocked by pretreatment with an ,1 - or ,2 -adrenergic antagonist. Similarly, pretreatment with the opiate antagonist did not prevent the suppression of LH release by ,1 and ,2 antagonists. This suggests that, in the guinea-pig, effects of opiates and catecholamines on LH release are exerted by independent pathways to luteinizing hormone releasing hormone (LHRH) neurones. For the opiate,serotonin interactions, pretreatment with the serotonergic antagonist did not block the stimulatory effect of the opiate antagonist on LH release. However, pretreatment with the opiate agonist could not be overcome by the serotonergic agonist. This suggests that the effects of the serotonin system on LHRH release may be indirectly mediated by opioid neurones. Taken together, these studies demonstrate that the three neurotransmitter systems studied are critically involved in normal pulsatile LH release in the female guinea-pig, and demonstrate novel functional relationships between the opioid and the adrenergic and serotonergic systems. [source] AB-polymer Networks with Cooligoester and Poly(n -butyl acrylate) Segments as a Multifunctional Matrix for Controlled Drug ReleaseMACROMOLECULAR BIOSCIENCE, Issue 9 2010Christian Wischke Abstract Semi-crystalline AB-copolymer networks from oligo[(, -caprolactone)- co -glycolide]dimethacrylates and n -butylacrylate have recently been shown to exhibit a shape-memory functionality, which may be used for self-deploying and anchoring of implants. In this study, a family of such materials differing in their molar glycolide contents ,G was investigated to determine structure,property functional relationships of unloaded and drug loaded specimens. Drug loading and release were evaluated, as well as their degradation behavior in vitro and in vivo. Higher ,G resulted in higher loading levels by swelling and a faster release of ethacridine lactate, lower melting temperature of polymer crystallites, and a decrease in shape fixity ratio of the programmed temporary shape. For unloaded networks, the material behavior in vivo was independent of the mechanical load associated with different implantation sites and agreed well with data from in vitro degradation studies. Thus, AB networks could be used as novel matrices for biofunctional implants, e.g., for urogenital applications, which can self-anchor in vivo and provide mechanical support, release drugs, and finally degrade in the body to excretable fragments. [source] Inbreeding, outbreeding and environmental effects on genetic diversity in 46 walleye (Sander vitreus) populationsMOLECULAR ECOLOGY, Issue 2 2006CHRISTOPHER J. CENA Abstract Genetic diversity is recognized as an important population attribute for both conservation and evolutionary purposes; however, the functional relationships between the environment, genetic diversity, and fitness-related traits are poorly understood. We examined relationships between selected lake parameters and population genetic diversity measures in 46 walleye (Sander vitreus) populations across the province of Ontario, Canada, and then tested for relationships between six life history traits (in three categories: growth, reproductive investment, and mortality) that are closely related to fitness, and genetic diversity measures (heterozygosity, d2, and Wright's inbreeding coefficient). Positive relationships were observed between lake surface area, growing degree days, number of species, and hatchery supplementation versus genetic diversity. Walleye early growth rate was the only life history trait significantly correlated with population heterozygosity in both males and females. The relationship between FIS and male early growth rate was negative and significant (P < 0.01) and marginally nonsignificant for females (P = 0.06), consistent with inbreeding depression effects. Only one significant relationship was observed for d2: female early growth rate (P < 0.05). Stepwise regression models showed that surface area and heterozygosity had a significant effect on female early growth rate, while hatchery supplementation, surface area and heterozygosity had a significant effect on male early growth rate. The strong relationship between lake parameters, such as surface area, and hatchery supplementation, versus genetic diversity suggests inbreeding and outbreeding in some of the populations; however, the weak relationships between genetic diversity and life history traits indicate that inbreeding and outbreeding depression are not yet seriously impacting Ontario walleye populations. [source] Sensitivity of electrophysiological tests for upper and lower motor neuron dysfunction in ALS: A six-month longitudinal studyMUSCLE AND NERVE, Issue 2 2010Mamede de Carvalho MD Abstract By following a group of amyotrophic lateral sclerosis (ALS) patients longitudinally using lower motor neuron (LMN) and upper motor neuron (UMN) markers of dysfunction it may be possible to better understand the functional relationships between these motor systems in this disease. We used neurophysiological techniques to follow UMN and LMN dysfunction in a group of 28 patients with ALS, in comparison with the ALS functional rating scale (ALS-FRS) score and the forced vital capacity (FVC). We used motor unit number estimation (MUNE), compound muscle action potential (CMAP) amplitude, and the Neurophysiological Index (NI) to quantify the LMN disorder, and transcranial motor stimulation to study cortical motor threshold, motor-evoked response amplitude, central motor conduction time, and cortical silent period (CSP). The patients were studied shortly after diagnosis and then 6 months later, using both abductor digiti minimi muscles (ADM); ADM strength was initially >MRC 3 (Medical Research Council, UK). The NI and MUNE changed more than any other variable. CSP increased by about 30%, a change more marked than the slight increase observed in the cortical motor threshold (9%). The normal increase of CSP after acute muscle fatigue was preserved during disease progression. The CSP increase correlated with the MUNE rate of decay but not to the NI reduction, perhaps because NI includes F-wave frequency in itscalculation. There was no definite correlation between UMN and LMNdysfunction or progression, but there was a link between CSP and LMN changes in ALS. The CSP may be a useful variable in following UMN dysfunction in clinical practice and in clinical trials. Muscle Nerve, 2010 [source] A domain level interaction network of amyloid precursor protein and A, of Alzheimer's diseasePROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 12 2010Victoria M. Perreau Abstract The primary constituent of the amyloid plaque, ,-amyloid (A,), is thought to be the causal "toxic moiety" of Alzheimer's disease. However, despite much work focused on both A, and its parent protein, amyloid precursor protein (APP), the functional roles of APP and its cleavage products remain to be fully elucidated. Protein,protein interaction networks can provide insight into protein function, however, high-throughput data often report false positives and are in frequent disagreement with low-throughput experiments. Moreover, the complexity of the CNS is likely to be under represented in such databases. Therefore, we curated the published work characterizing both APP and A, to create a protein interaction network of APP and its proteolytic cleavage products, with annotation, where possible, to the level of APP binding domain and isoform. This is the first time that an interactome has been refined to domain level, essential for the interpretation of APP due to the presence of multiple isoforms and processed fragments. Gene ontology and network analysis were used to identify potentially novel functional relationships among interacting proteins. [source] Correlation-associated peptide networks of human cerebrospinal fluidPROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 11 2005Jens Lamerz Dr. Abstract Profiling of peptides and small proteins from either human body fluids or tissues by chromatography and subsequent mass spectrometry reveals several thousand individual peptide signals per sample. Any peptide is an intermediate in the course of biosynthesis, post-translational modification (PTM), proteolytic processing and degradation. Changes in the concentration of one peptide often affects the concentration of the other, hence a challenge consists in the development of suitable tools to turn this large amount of data into biologically relevant information. Comprehensive statistical analysis of the peptide profiling data allows associating peptides, which are closely related in terms of peptide biochemistry. Here, the bioinformatic concept of peptide networks, correlation-associated peptide networks (CANs), is introduced. Peptides with statistical similarity of their concentrations are grouped in form of networks, and these networks are interpreted in terms of peptide biochemistry. The spectrum of functional relationships found in cerebrospinal fluid CAN covers PTM and proteolytic degradation of peptides, clearance processing in the complement cascade, common secretion of peptides by neuroendocrine cells as well as ubiquitin-mediated degradation. Our results indicate that CAN is a powerful bioinformatic tool for the systematic analysis and interpretation of large peptidomics and proteomics data and helps to discover novel bioactive and diagnostic peptides. [source] Random Walks and the Cointegration of the ACLI and NCREIFREAL ESTATE ECONOMICS, Issue 3 2000Leon Shilton Do NCREIF returns influence commercial mortgage underwriters when they adjust capitalization rates? Are the ACLI capitalization series and the NCREIF return series cointegrated at the national and the smaller geographic sub-division levels? This research uses a two-step procedure to test for cointegration. First, the Phillips,Perron unit-root procedure must show that each series is a unit-root random walk. Previous research usually has assumed that these series are random walks, with the implication that the commercial mortgage market is efficient. Second, the Phillips,Ouliaris test of the residuals of a function of the two series determines the possibility of cointegration. At the national level and for the Northeast and Pacific regions the two series are random walks and cointegrated. In other geographic sub-divisions, neither or only one series is a random walk and therefore the data does not support a relationship. The lack of functional relationships in four of the six smaller geographic regions suggests that underwriters are not obtaining the NCREIF information or are ignoring it. The lack of random walks with the implication about capital-market efficiency invites further research. [source] 4133: Dry eye and human tear lipid compositional, conformational and functional relationships using spectroscopyACTA OPHTHALMOLOGICA, Issue 2010D BORCHMAN Purpose Knowledge of the relationships among composition, conformation and function of tear film lipids could facilitate the development of therapies to alleviate symptoms related to meibomian gland dysfunction (MGD) and to diagnose the disease. Toward this goal, we used spectroscopic approaches to assess tear lipid composition and conformation relationships with age, sex and meibomian gland dysfunction. Methods Spectra of meibum from 41 patients diagnosed with MGD (Md) and 27 normal donors (Mn) were acquired. Results 1H-NMR spectra showed cholesterol esters were found to decrease by 21% with MGD. The number of double bonds/ester increased with age and MGD which indirectly relates to tear film stability. With age, the amount of CH2 groups increased twice as much as the C=C moieties and the C=C/CH2 and CH3/CH2 ratios were related to lipid order and indirectly related to meibum delivery. With the use of MALDI-TOF MS, we quantified and identified lipid components in Mn and Md such as cholesterol, hydrocarbons and wax esters with a sensitivity of 9 pmoles for each analyte. Sixty-nine of the 189 resolved peaks were unique to Md spectra compared to Mn spectra and were not due to waxes. Extra peaks in Md spectra may arise from increased lipid synthesis, bacteria or cellular debris. Conclusion It is reasonable that as the lipids become more ordered and more viscous with Md, less lipid flows out of the meibomian gland orifice and more casual lipid is present on the lid margin. The age- and disease-related changes in the physical and chemical characteristics of meibum lipids suggest that the C=C/CH2 and CH3/CH2 ratios may be more important than quantity in relation to tear film stability. [source] | |||||||||||||||||||||||||||||||