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First Comparison (first + comparison)
Selected AbstractsBacterial community structure of glacier forefields on siliceous and calcareous bedrockEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 6 2009A. Lazzaro Summary Forefields of retreating glaciers represent unique opportunities to investigate the initial phases of soil formation and microbial interactions with mineral surfaces. An open question concerns the physical and chemical driving-factors affecting the establishment of microbial communities in these young ecosystems. In this study we compared the bacterial community structure of six glacier forefield soils belonging to two contrasting bedrock categories (calcareous and siliceous) through T-RFLP profiling of the 16S rRNA gene. The community profiles were correlated with an array of physical (soil texture, water holding capacity, hours of sunshine, temperature, rainfall and exposure) and chemical (TC, TN, DOC, extractable nutrients and pH) factors using canonical correspondence analysis (CCA). A first comparison of the T-RFLP profiles suggested that the degree of operational taxonomic unit (OTU) diversity of these soils was similar, and that community structure was dominated by ubiquitous taxa. CCA showed that both physical (e.g. hours of sunshine or rainfall) and chemical factors (e.g. SO2,4 or PO3,4) played an equal role in shaping the soil bacterial communities. OTUs unique to specific sites appeared to be strongly influenced by the climatic regime and by texture. Overall, the community structure of the six glacial forefields showed no clear dependence on the bedrock categories. [source] Biochemical characterization of MI-ENG1, a family 5 endoglucanase secreted by the root-knot nematode Meloidogyne incognitaFEBS JOURNAL, Issue 11 2000Christel Béra-Maillet A ,-1,4-endoglucanase named MI-ENG1, homologous to the family 5 glycoside hydrolases, was previously isolated from the plant parasitic root-knot nematode Meloidogyne incognita. We describe here the detection of the enzyme in the nematode homogenate and secretion and its complete biochemical characterization. This study is the first comparison of the enzymatic properties of an animal glycoside hydrolase with plant and microbial enzymes. MI-ENG1 shares many enzymatic properties with known endoglucanases from plants, free-living or rumen-associated microorganisms and phytopathogens. In spite of the presence of a cellulose-binding domain at the C-terminus, the ability of MI-ENG1 to bind cellulose could not be demonstrated, whatever the experimental conditions used. The biochemical characterization of the enzyme is a first step towards the understanding of the molecular events taking place during the plant,nematode interaction. [source] Comparing welfare estimates from payment card contingent valuation and discrete choice experimentsHEALTH ECONOMICS, Issue 4 2009Mandy Ryan Abstract This study presents the first comparison of willingness to pay estimates derived from the payment card (PC) contingent valuation and discrete choice experiment (DCE) methods. A within-sample experiment was used to elicit women's preferences for Chlamydia screening. The willingness to pay estimate derived from the DCE was larger than that derived from the PC. To investigate why the willingness to pay estimates were different, a range of validity tests were conducted. Both methods produced theoretically valid results, and there was no difference in the reported difficulty of completing the tasks. Evidence of a prominence effect was found in the PC responses. Responses to the DCE satisfied tests of non-satiation. Responses to both methods were compared with revealed preference data. There were significant differences between stated screening intention in both methods and actual screening uptake. Future work should address the external validity of stated preference methods. Copyright © 2008 John Wiley & Sons, Ltd. [source] An assessment of the differences between three satellite snow cover mapping techniques,HYDROLOGICAL PROCESSES, Issue 18 2002David Bitner Abstract The National Operational Hydrologic Remote Sensing Center (NOHRSC) of the National Oceanic and Atmospheric Administration's (NOAA's) National Weather Service (NWS) provides daily satellite-derived snow cover maps to support the NWS Hydrologic Services Program covering the coterminous USA and Alaska. This study compared the NOHRSC snow cover maps with new automated snow cover maps produced by the National Environmental Satellite, Data, and Information Service (NESDIS) and the snow cover maps created from the Moderate Resolution Imaging Spectroradiometer (MODIS) imagery. The purpose of this paper is to demonstrate and account for the differences that occur between the three different snow cover mapping techniques. Because each of these snow cover products uses data from different sensors at different resolutions, the data were degraded to the coarsest relevant resolution. In both comparisons, forest canopy density was examined as a possible explanatory factor to account for those differences. NOHRSC snow cover maps were compared with NESDIS snow cover maps for 32 different dates from November 2000 to February 2001. NOHRSC snow cover maps were also compared with MODIS snow cover maps in the Pacific Northwest and the Great Plains for 18 days and 21 days, respectively, between March and June 2001. In the first comparison, where the NOHRSC product (,1 km) was degraded to match the resolution of the NESDIS data (,5 km), the two products showed an average agreement of 96%. Forest canopy density data provided only weak explanation for the differences between the NOHRSC and the NESDIS snow cover maps. In the second comparison, where the MODIS product (,500 m) was degraded to match the resolution of the NOHRSC product for two sample areas, the agreement was 94% in the study area in the Pacific Northwest, and 95% in the study area in the Great Plains. Published in 2002 by John Wiley & Sons, Ltd. [source] Allergen content of grass pollen preparations for skin prick testing and sublingual immunotherapyALLERGY, Issue 10 2009I. Sander Background:, The allergen content of diagnostics and immunotherapeutics is crucial for effective diagnosis and treatment. The aim of this study was to quantify and compare the allergen content of different grass pollen preparations for skin prick testing and sublingual immunotherapy (SLIT). Methods:, Five skin prick test (SPT) solutions and 10 sublingual immunotherapeutics were analysed for protein and allergen concentration by Bradford assay, inhibition of IgE-binding to Phleum pratense ImmunoCAPs and content of the main allergen Phl p 5 by two-site enzyme immunoassay. In addition, the grass pollen preparations were compared by sodium dodecyl sulfate,polyacrylamide gel electrophoresis (SDS-PAGE) and immunoblotting analyses. Results:, Protein concentrations of SPT solutions ranged from 15 to 427 ,g/ml, and Phl p 5 concentrations ranged from 0.15 to 18.3 ,g/ml. The ranking of SPT solutions concerning Phl p 5 content and IgE inhibition capacity was the same, and the ranking of protein and allergen content was closely correlated (r = 0.9). Protein content of the maintenance doses of the immunotheurapeutics ranged from 5 to 153 ,g, Phl p 5 content ranged from 0.2 to 21.6 ,g. IgE inhibition capacity of the maintenance doses was closely correlated to their Phl p 5 and protein content. SDS-PAGE and immunoblots confirmed the differences in protein and allergen content. Conclusions:, Grass pollen preparations for SPT and SLIT varied greatly concerning protein and allergen content. Whereas this result corresponds to previous analyses results of SPT solutions, it was the first comparison of grass pollen immunotherapeutics. For diagnosis and therapy, these differences should be taken into account. [source] Genome-wide gene expression profiling and a forward genetic screen show that differential expression of the sodium ion transporter Ena21 contributes to the differential tolerance of Candida albicans and Candida dubliniensis to osmotic stressMOLECULAR MICROBIOLOGY, Issue 1 2009Brice Enjalbert Summary Candida albicans is more pathogenic than Candida dubliniensis. However, this disparity in virulence is surprising given the high level of sequence conservation and the wide range of phenotypic traits shared by these two species. Increased sensitivity to environmental stresses has been suggested to be a possible contributory factor to the lower virulence of C. dubliniensis. In this study, we investigated, in the first comparison of C. albicans and C. dubliniensis by transcriptional profiling, global gene expression in each species when grown under conditions in which the two species exhibit differential stress tolerance. The profiles revealed similar core responses to stresses in both species, but differences in the amplitude of the general transcriptional responses to thermal, salt and oxidative stress. Differences in the regulation of specific stress genes were observed between the two species. In particular, ENA21, encoding a sodium ion transporter, was strongly induced in C. albicans but not in C. dubliniensis. In addition, ENA21 was identified in a forward genetic screen for C. albicans genomic sequences that increase salt tolerance in C. dubliniensis. Introduction of a single copy of CaENA21 was subsequently shown to be sufficient to confer salt tolerance upon C. dubliniensis. [source] Plumage colour mutations and melanins in the feathers of the Japanese quail: a first comparisonANIMAL GENETICS, Issue 6 2009F. Minvielle Summary The absorbance of melanin content from dorsal feathers was compared between wild-type Japanese quail and nine other quail plumage colours determined by single mutations in one of seven genes: extended brown (MC1R), yellow (ASIP), silver (MITF), lavender (MLPH), roux (TYRP1), imperfect albinism (SLC45A2) and rusty. As compared with wild-type quail, all mutations but extended brown decreased total melanins. The largest decrease was observed in quail with one of the dilution mutations at TYRP1, MLPH or SLCA45A2. No difference in eumelanins was found between the 10 plumage colours. Despite visible colour differences, homozygous and heterozygous mutants at MITF, or the two imperfect albino (white) and cinnamon (pale yellow) alleles at SLC45A2, could not be differentiated on the basis of melanins. In contrast, the two white phenotypes caused by mutations at MITF and SLC45A2, or the two reddish plumage colours caused by the roux and rusty non-allelic mutations had different total melanin contents. The results showed that rusty was not likely to be a dilution mutation. [source] Diagnostic value and prognostic significance of protein S-100,, melanoma-inhibitory activity, and tyrosinase/MART-1 reverse transcription-polymerase chain reaction in the follow-up of high-risk melanoma patientsCANCER, Issue 7 2003Claus Garbe M.D. Abstract BACKGROUND Cutaneous melanoma is the most aggressive form of skin carcinoma in humans, frequently with a rapid progression of disease. To detect early developing metastasis, laboratory tests to determine levels of lactate dehydrogenase (LDH) and alkaline phosphatase (AP) form part of the regular follow-up, but often cannot discover recurrent disease at a sufficiently early stage. METHODS To evaluate the diagnostic accuracy of protein S-100, (S-100,), melanoma-inhibitory activity (MIA), LDH, AP, and tyrosinase/MART-1 reverse transcription-polymerase chain reaction (RT-PCR), the authors included 296 consecutive AJCC Stage II or III clinically disease-free melanoma patients. Follow-up examinations were performed every 3 months and blood samples were drawn to determine the levels of these tumor markers. RESULTS Metastasis occurred in 41 of the 296 patients during a median follow-up period of 19 months (range, 1,33 months). The sensitivity to detect new metastases was 29% for protein S-100,, 22% for MIA, 2% for LDH, 17% for AP, and 24% for RT-PCR. The diagnostic accuracy was best for MIA (86%) and S-100, (84%), whereas AP (79%), LDH (77%), and RT-PCR (72%) demonstrated lower values. Elevated values of S-100, and MIA during follow-up examinations were associated with decreased survival rates in the further course of the disease, but pathologic findings of the other tumor markers showed no prognostic impact. CONCLUSIONS To the authors' knowledge, the current study is the first comparison of the diagnostic accuracy of currently available tumor markers in the follow-up of high-risk melanoma patients. Protein S-100, and MIA demonstrated a higher sensitivity, specificity, and diagnostic accuracy in the diagnosis of newly occurring metastasis compared with to the tumor markers AP, LDH, and RT-PCR diagnostics. Therefore, the tumor markers S-100, and MIA may be useful in the follow-up of disease-free Stage II and III melanoma patients. Cancer 2003;97:1737,45. © 2003 American Cancer Society. DOI 10.1002/cncr.11250 [source] | |||||||||||||