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Fermentation Pathways (fermentation + pathway)
Selected AbstractsDevelopment of Industrial-Medium-Required Elimination of the 2,3-Butanediol Fermentation Pathway To Maintain Ethanol Yield in an Ethanologenic Strain of Klebsiellaoxytoca,BIOTECHNOLOGY PROGRESS, Issue 5 2005Brent E. Wood Fermentation efficiency and nutrient costs are both significant factors in process economics for the microbial conversion of cellulosic biomass to commodity chemicals such as ethanol. In this study, we have developed a more industrial medium (OUM1) composed of 0.5% corn steep liquor (dry weight basis) supplemented with mineral salts (0.2%), urea (0.06%), and glucose (9%). Although the growth of strain P2 was vigorous in this medium, approximately 14% of substrate carbon was diverted into 2,3-butanediol and acetoin under the low pH conditions needed for optimal cellulase activity during simultaneous saccharification. Deleting the central region of the budAB genes encoding ,-acetolactate synthase and ,-acetolactate decarboxylase eliminated the butanediol and acetoin coproducts and increased ethanol yields by 12%. In OUM1 medium at pH 5.2, strain BW21 produced over 4% ethanol in 48 h (0.47 g ethanol per g glucose). Average productivity (48 h), ethanol titer, and ethanol yield for BW21 in OUM1 medium (pH 5.2) exceeded that of the parent (strain P2) in rich laboratory medium (Luria broth). [source] Genome-scale modeling of Synechocystis sp.JOURNAL OF CHEMICAL TECHNOLOGY & BIOTECHNOLOGY, Issue 4 2009PCC 680, prediction of pathway insertion Abstract BACKGROUND: Cyanobacterium Synechocystis sp. PCC 6803 has been used widely as a model system for the study of photosynthetic organisms and higher plants. The aim of this work was to integrate the genomic information, biochemistry and physiological information available for Synechocystis sp. PCC 6803 to reconstruct a metabolic network for system biology investigations. RESULTS: A genome-scale Synechocystis sp. PCC 6803 metabolic network, including 633 genes, 704 metabolites and 831 metabolic reactions, was reconstructed for the study of optimal Synechocystis growth, network capacity and functions. Heterotrophic, photoautotrophic and mixotrophic growth conditions were simulated. The Synechocystis model was used for in silico predictions for the insertion of ethanol fermentation pathway, which is a novel approach for bioenergy and biofuels production developed in the authors' laboratory. Simulations of Synechocystis cell growth and ethanol production were compared with actual metabolic measurements which showed a satisfactory agreement. CONCLUSION: The Synechocystis metabolic network developed in this study is the first genome-scale mathematical model for photosynthetic organisms. The model may be used not only in global understanding of cellular metabolism and photosynthesis, but also in designing metabolic engineering strategies for desirable bio-products. Copyright © 2008 Society of Chemical Industry [source] Carbohydrate,ethanol transition in cereal grains under anoxiaNEW PHYTOLOGIST, Issue 3 2001Lorenzo Guglielminetti Summary ,,Cereal grains differ greatly in their reponses to anaerobiosis. Here, the in vivo conversion of carbohydrates to ethanol and CO2 under anoxia is reported for three cereal grains. ,,The conversion of glucose, fructose or sucrose to ethanol under anaerobic conditions was investigated in rice (Oryza sativa), barley (Hordeum vulgare) and wheat (Triticum aestivum) grains; alcohol dehydrogenase (EC 1.1.1.1) and pyruvate decarboxylase (EC 4.1.1.1) activities were also analysed under aerobic and anaerobic incubation. ,,Our data suggest that rice grains are able to produce ethanol under anoxia for the whole period of anoxic treatment, whereas barley and wheat grains can produce this terminal product of fermentation only during the first days of anaerobiosis. The level of enzymes involved in the fermentation pathway increases strongly under anoxic conditions in all three cereals. ,,Conversion of hexose to CO2 is nearly unaffected by anoxia in wheat, barley and rice, whereas only rice grains are able to degrade and utilize sucrose efficiently under anoxia. By contrast, wheat and barley do not utilize sucrose efficiently under anaerobic conditions. [source] Effect of finishing diets on Escherichia coli populations and prevalence of enterohaemorrhagic E. coli virulence genes in cattle faecesJOURNAL OF APPLIED MICROBIOLOGY, Issue 4 2005R.A. Gilbert Abstract Aim:, To determine the effect of different carbohydrate-based finishing diets on fermentation characteristics and the shedding of Escherichia coli and enterohaemorrhagic E. coli (EHEC) virulence genes in cattle faeces. Methods and Results:, The size of faecal E. coli populations and fermentation characteristics were ascertained in three experiments where cattle were maintained on a range of finishing diets including high grain, roughage, and roughage + molasses (50%) diets. Increased E. coli numbers, decreased pH and enhanced butyrate and lactate fermentation pathways were associated with grain diets, whereas roughage and roughage + molasses diets resulted in decreased concentrations of ehxA, eaeA and stx1 genes, this trend remaining at lairage. In one experiment, faecal E. coli numbers were significantly lower in animals fed roughage and roughage + molasses, than animals fed grain (4·5, 5·2 and 6·3 mean log10 g,1 digesta respectively). In a second experiment, faecal E. coli numbers were 2 log lower in the roughage and roughage + molasses diets compared with grain-fed animals prior to lairage (5·6, 5·5 and 7·9 mean log10 g,1 digesta respectively) this difference increasing to 2·5 log at lairage. Conclusions:, The type of dietary carbohydrate has a significant effect on E. coli numbers and concentration of EHEC virulence genes in faeces of cattle. Significance and Impact of the Study:, The study provides a better understanding of the impact finishing diet and commercial lairage management practices may have on the shedding of E. coli and EHEC virulence factors, thus reducing the risk of carcass contamination by EHEC. [source] Comparison of sheep and red deer rumen fluids for assessing nutritive value of ruminant feedstuffsJOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 14 2005Gonzalo Hervás Abstract Four forages (alfalfa hay, barley straw, maize silage and beet pulp), four cereal grains (barley, maize, sorghum and wheat) and four shrubs (Calluna vulgaris, Erica australis, Cytisus cantabricus and Genista occidentalis) were incubated using rumen fluids from sheep and red deer, to examine differences in in vitro fermentation rates and ruminal parameters. For the forages and cereal grains, results suggest few differences between species in parameters related to gas production, rates of fermentation, organic matter disappearance and extent of degradation. Deer showed slightly better results for shrubs than sheep did. Disappearance of neutral detergent fibre was generally greater when the rumen fluid was derived from red deer (P < 0.05). On the other hand, ammonia-N concentration and total volatile fatty acids (VFAs) were higher in sheep (P < 0.05). Molar proportions of the major VFAs showed significant differences (P < 0.05) associated with the species of the inoculum donor and suggest that fermentation pathways might have been more efficient in red deer. The estimated amount of methane was higher in sheep, regardless of the substrate incubated (P < 0.001). The results indicate that although the sheep could be valid as a model to assess the nutritive value of good quality feedstuffs for red deer, it would fail to offer reliable information on non-conventional, low-quality feeds such as shrubs. Copyright © 2005 Society of Chemical Industry [source] Evaluation of metabolism using stoichiometry in fermentative biohydrogenBIOTECHNOLOGY & BIOENGINEERING, Issue 3 2009Hyung-Sool Lee Abstract We first constructed full stoichiometry, including cell synthesis, for glucose mixed-acid fermentation at different initial substrate concentrations (0.8,6 g-glucose/L) and pH conditions (final pH 4.0,8.6), based on experimentally determined electron-equivalent balances. The fermentative bioH2 reactions had good electron closure (,9.8 to +12.7% for variations in glucose concentration and ,3 to +2% for variations in pH), and C, H, and O errors were below 1%. From the stoichiometry, we computed the ATP yield based on known fermentation pathways. Glucose-variation tests (final pH 4.2,5.1) gave a consistent fermentation pattern of acetate,+,butyrate,+,large H2, while pH significantly shifted the catabolic pattern: acetate,+ butyrate,+,large H2 at final pH 4.0, acetate,+,ethanol,+ modest H2 at final pH 6.8, and acetate,+,lactate,+,trivial H2 at final pH 8.6. When lactate or propionate was a dominant soluble end product, the H2 yield was very low, which is in agreement with the theory that reduced ferredoxin (Fdred) formation is required for proton reduction to H2. Also consistent with this hypothesis is that high H2 production correlated with a high ratio of butyrate to acetate. Biomass was not a dominant sink for electron equivalents in H2 formation, but became significant (12%) for the lowest glucose concentration (i.e., the most oligotrophic condition). The fermenting bacteria conserved energy similarly at ,3 mol ATP/mol glucose (except 0.8 g-glucose/L, which had ,3.5 mol ATP/mol glucose) over a wide range of H2 production. The observed biomass yield did not correlate with ATP conservation; low observed biomass yields probably were caused by accelerated rates of decay or production of soluble microbial products. Biotechnol. Bioeng. 2009; 102: 749,758. © 2008 Wiley Periodicals, Inc. [source] | |||||||||||||