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Extant Species (extant + species)
Selected AbstractsA comparative analysis of the habitat of the extinct aurochs and other prehistoric mammals in BritainECOGRAPHY, Issue 2 2008Stephen J. G. Hall The present study tests the hypothesis that the habitat of the globally extinct aurochs Bos primigenius was primarily riverine flat-lands. Landscape features in Britain were analyzed for sites with Late Pleistocene and postglacial finds of aurochs (n=188), and, for comparison, wolf (101), brown bear (96), red deer (73), beaver (68), roe deer (46) and moose (23). Find sites were defined as Ordnance Survey 1 km map squares containing 1 or more finds. For each, spot height above sea level, heights of contour lines, flatness of terrain, total length of watercourses, and presence of woods, rock and water features were noted. Comparisons of find sites among species (Kruskal-Wallis test) show significant differences that accord with knowledge of present-day habitat preferences at the landscape level. Considering the species separately each find site was then compared with a randomly selected control map square within 10 km. Compared with their respective control squares, find sites of beaver have, today, a stronger association with presence of lakes; those of brown bear and wolf with presence of cliffs and rock outcrops; and those of aurochs with absence of woodland and with lower elevation and greater flatness. The concordance of these findings with the present-day habitats of the extant species suggests valid inferences can be made about the habitat preference of the extinct aurochs. On this basis the aurochs appears, as hypothesized, to have selected low-lying, flat ground, which (indicated by its present-day use for purposes other than woodland) was relatively fertile. [source] THE PHYLOGENETIC PATTERN OF SPECIATION AND WING PATTERN CHANGE IN NEOTROPICAL ITHOMIA BUTTERFLIES (LEPIDOPTERA: NYMPHALIDAE)EVOLUTION, Issue 7 2006Chris D. Jiggins Abstract Species level phylogenetic hypotheses can be used to explore patterns of divergence and speciation. In the tropics, speciation is commonly attributed to either vicariance, perhaps within climate-induced forest refugia, or ecological speciation caused by niche adaptation. Mimetic butterflies have been used to identify forest refugia as well as in studies of ecological speciation, so they are ideal for discriminating between these two models. The genus Ithomia contains 24 species of warningly colored mimetic butterflies found in South and Central America, and here we use a phylogenetic hypothesis based on seven genes for 23 species to investigate speciation in this group. The history of wing color pattern evolution in the genus was reconstructed using both parsimony and likelihood. The ancestral pattern for the group was almost certainly a transparent butterfly, and there is strong evidence for convergent evolution due to mimicry. A punctuationist model of pattern evolution was a significantly better fit to the data than a gradualist model, demonstrating that pattern changes above the species level were associated with cladogenesis and supporting a model of ecological speciation driven by mimicry adaptation. However, there was only one case of sister species unambiguously differing in pattern, suggesting that some recent speciation events have occurred without pattern shifts. The pattern of geographic overlap between clades over time shows that closely related species are mostly sympatric or, in one case, parapatric. This is consistent with modes of speciation with ongoing gene flow, although rapid range changes following allopatric speciation could give a similar pattern. Patterns of lineage accumulation through time differed significantly from that expected at random, and show that most of the extant species were present by the beginning of the Pleistocene at the latest. Hence Pleistocene refugia are unlikely to have played a major role in Ithomia diversification. [source] NONSTOCHASTIC VARIATION OF SPECIES-LEVEL DIVERSIFICATION RATES WITHIN ANGIOSPERMSEVOLUTION, Issue 3 2003Hallie J. Sims Abstract Variations in the origination and extinction rates of species over geological time often are linked with a range of factors, including the evolution of key innovations, changes in ecosystem structure, and environmental factors such as shifts in climate and physical geography. Before hypothesizing causality of a single factor, it is critical to demonstrate that the observed variation in diversification is significantly greater than one would expect due to natural stochasticity in the evolutionary branching process. Here, we use a likelihood-ratio test to compare taxonomic rate heterogeneity to a neutral birth-death model, using data on well-supported sister pairs of taxa and their species richness. We test the likelihood that the distribution of extant species among angiosperm genera and families could be the result of constant diversification rates. Results strongly support the conclusion that there is significantly more heterogeneity in diversity at the species level within angiosperms than would be expected due to stochastic processes. This result is consistent in datasets of genus pairs and family pairs and is not affected significantly by degrading pairs to simulate inaccuracy in the assumption of simultaneous origin of sister taxa. When we parse taxon pairs among higher groups of angiosperms, results indicate that a constant rates model is not rejected by rosid and basal eudicot pairs but is rejected by asterid and eumagnoliid pairs. These results provide strong support for the hypothesis that species-level rates of origination and/or extinction have varied nonrandomly within angiosperms and that the magnitude of heterogeneity varies among major groups within angiosperms. [source] PERSPECTIVE: GENE DIVERGENCE, POPULATION DIVERGENCE, AND THE VARIANCE IN COALESCENCE TIME IN PHYLOGEOGRAPHIC STUDIESEVOLUTION, Issue 6 2000ScottV. Abstract Molecular methods as applied to the biogeography of single species (phylogeography) or multiple codistributed species (comparative phylogeography) have been productively and extensively used to elucidate common historical features in the diversification of the Earth's biota. However, only recently have methods for estimating population divergence times or their confidence limits while taking into account the critical effects of genetic polymorphism in ancestral species become available, and earlier methods for doing so are underutilized. We review models that address the crucial distinction between the gene divergence, the parameter that is typically recovered in molecular phylogeographic studies, and the population divergence, which is in most cases the parameter of interest and will almost always postdate the gene divergence. Assuming that population sizes of ancestral species are distributed similarly to those of extant species, we show that phylogeographic studies in vertebrates suggest that divergence of alleles in ancestral species can comprise from less than 10% to over 50% of the total divergence between sister species, suggesting that the problem of ancestral polymorphism in dating population divergence can be substantial. The variance in the number of substitutions (among loci for a given species or among species for a given gene) resulting from the stochastic nature of DNA change is generally smaller than the variance due to substitutions along allelic lines whose coalescence times vary due to genetic drift in the ancestral population. Whereas the former variance can be reduced by further DNA sequencing at a single locus, the latter cannot. Contrary to phylogeographic intuition, dating population divergence times when allelic lines have achieved reciprocal monophyly is in some ways more challenging than when allelic lines have not achieved monophyly, because in the former case critical data on ancestral population size provided by residual ancestral polymorphism is lost. In the former case differences in coalescence time between species pairs can in principle be explained entirely by differences in ancestral population size without resorting to explanations involving differences in divergence time. Furthermore, the confidence limits on population divergence times are severely underestimated when those for number of substitutions per site in the DNA sequences examined are used as a proxy. This uncertainty highlights the importance of multilocus data in estimating population divergence times; multilocus data can in principle distinguish differences in coalescence time (T) resulting from differences in population divergence time and differences in T due to differences in ancestral population sizes and will reduce the confidence limits on the estimates. We analyze the contribution of ancestral population size (,) to T and the effect of uncertainty in , on estimates of population divergence (,) for single loci under reciprocal monophyly using a simple Bayesian extension of Takahata and Satta's and Yang's recent coalescent methods. The confidence limits on , decrease when the range over which ancestral population size , is assumed to be distributed decreases and when increases; they generally exclude zero when /(4Ne) > 1. We also apply a maximum-likelihood method to several single and multilocus data sets. With multilocus data, the criterion for excluding = 0 is roughly that l/(4Ne)> 1, where l is the number of loci. Our analyses corroborate recent suggestions that increasing the number of loci is critical to decreasing the uncertainty in estimates of population divergence time. [source] Unity in diversity: Lessons from macaque societiesEVOLUTIONARY ANTHROPOLOGY, Issue 6 2007Article first published online: 19 DEC 200, Bernard Thierry Abstract The macaque radiation is as old as the hominin radiation, approximately 7 million years. After Homo, Macaca has the widest geographical range among primates, and both of these genera are present in tropical and temperate regions as well. Whereas the single extant representative of the genus Homo diverged through processes of cultural diversification, extant species of macaques emerged through processes of evolutionary diversification. Macaque societies are characterized by profound unity and great diversity, and can best be described as variations on the same theme. To understand macaque variation and adaptation, we must take into account the processes that insure the persistence of their societies across generations and environments. [source] Fossil fruits of Salsola L. s.l. and Halanthium K.Koch (Chenopodiaceae) from Lower Pleistocene lacustrine sediments in Armenia,FEDDES REPERTORIUM, Issue 3-4 2008Janna Akopian Dr. For the first time imprints of fossil fruits of Salsola L. s.l. and Halanthium K.Koch (Chenopodiaceae, Salsoloideae,) are reported from the territory of Armenia, the latter being the first fossil record of the Southwest Asian genus worldwide. They were collected from fluvio-lacustrine diatomite layers of the Lower Pleistocene (Sisian series) in the upper-middle Vorotan river valley recently dated at 1.4,0.935 my (Early Pleistocene). The fossils are described, figured and compared with recent relatives. Due to poor preservation, the identity of the Salsola fruit cannot be specified but the similar genus Kochia can be excluded. The Halanthium fruit seems to differ from those of extant species. Both are also discussed in the context of the very poor fossil Salsoloideae record and of the actual and lower Pleistocene vegetation and environment. The findings of truly semidesert species underline the presence of open landscapes and extremely semiarid to arid conditions. However, stratigraphically more refined analyses are needed to draw conclusions about the former vegetation and the duration of arid periods because most macrofossils reported from the same strata indicate semiarid and even humid environments. (© 2008 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) Fossile Früchte von Salsola L. und Halanthium K.Koch (Chenopodiaceae) aus unterpleistozänen lakustrischen Sedimenten in Armenien Erstmals wird über Funde fossiler Früchte der Gattungen Salsola L. s.l. und Halanthium K.Koch (Chenopodiaceae, Salsoloideae) aus Armenien berichtet. Für die letztere Gattung handelt es sich weltweit um einen Erstfund. Die nur mäßig guten Abdrucke stammen aus fluvio-lakustrischen Diatomiten der Sisian Serie vom oberen Vorotan-Tal, die nach neuesten Datierungen 1,4,0,935 Millionen Jahre alt sind und damit in das Unterpleistozän gehören. Die Fossilien werden beschrieben, abgebildet und mit den nächsten rezenten Verwandten verglichen. Während bei der Salsola -Frucht wegen Beschädigungen vor der Einbettung keine Artbestimmung möglich ist, die Zugehörigkeit zu Kochia aber ausgeschlossen werden kann, stimmt die besser erhaltene Halanthium- Frucht mit keiner rezenten Art überein. Beide Arten werden im Zusammenhang mit dem bisher äußerst spärlichen Fossilbefund und im Hinblick auf ihren möglichen ökologischen und vegetationskundlichen Indikatorwert diskutiert. Die Nachweise dieser Halbwüstenpflanzen sprechen für eine waldfreie Umgebung und ein extremsemiarides oder arides Klima zur Zeit der Einbettung. Die gleichen Schichten enthalten aber vor allem Makrofossilien mesophytischer Gehölze, die an ein semiarides bis humides Klima gebunden sind. Weitergehende Rückschlüsse sind erst dann möglich, wenn eine feinstratigraphische Analyse vorliegt, durch die größere klimatische Fluktuationen nachgewiesen werden könnten. [source] Rhyacophila quadrata n. sp., a new caddisfly (Insecta, Trichoptera) from Eocene Baltic amberFOSSIL RECORD-MITTEILUNGEN AUS DEM MUSEUM FUER NATURKUNDE, Issue 1 2008Wilfried Wichard Abstract Rhyacophila quadrata n. sp., a new fossil caddisfly, is described from Eocene Baltic amber. The new species belongs to the family Rhyacophilidae whose extant larvae prefer cool running-water habitats. In Baltic amber, the genus Rhyacophila is now represented by only seven species, whereas more than 500 extant species are described from the Holarctic region. Differences in the biodiversity patterns of the rare fossil faunas and extant species are discussed. (© 2008 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Can the evolutionary-rates hypothesis explain species-energy relationships?FUNCTIONAL ECOLOGY, Issue 6 2005K. L. EVANS Summary 1There is growing consensus that much of the marked broad-scale spatial variation in species richness is associated with variation in environmental energy availability, but at least nine principal mechanisms have been proposed that may explain these patterns. 2The evolutionary-rates hypothesis suggests that high environmental energy availability elevates rates of molecular evolution, promoting faster speciation, so that more species occur in high-energy areas because more evolve there. Direct tests of this hypothesis are rare and their conclusions inconsistent. Here we focus on assessing the support for its underlying assumptions. 3First, the evolutionary-rates hypothesis assumes that high energy levels promote mutation. There is certainly evidence that high levels of ultraviolet radiation increase mutation rates. High temperatures may also reduce generation times and elevate metabolic rates, which may promote mutation. On balance, data support a link between rates of metabolism and mutation, but a link between the latter and generation time is more equivocal and is particularly unlikely in plants. 4Second, the evolutionary-rates hypothesis assumes that mutation rates limit speciation rates. This may be true if all else was equal, but correlations between mutation and speciation are probably very noisy as many other factors may influence rates both of sympatric and allopatric speciation, including the occurrence of physical isolation barriers, the magnitude of selection and population size. 5Third, the evolutionary-rates hypothesis assumes that there is a strong correlation between current and historical energy levels. Factors such as tectonic drift may weaken such relationships, but are likely to have had negligible effects over the time period during which the majority of extant species evolved. 6Fourth, the evolutionary-rates hypothesis assumes that changes in species ranges following speciation do not sufficiently weaken the correlation between the rate of speciation in an area and species richness. The ranges of many species appear to alter dramatically following speciation, and this may markedly reduce the strength of the relationship, but to what extent is unclear. 7In sum, the degree to which the evolutionary-rates hypothesis can explain spatial variation in species richness remains surprisingly uncertain. We suggest directions for further research. [source] Identification of Acipenseriformes species in tradeJOURNAL OF APPLIED ICHTHYOLOGY, Issue 2008A. Ludwig Summary Sturgeons and paddlefishes (Acipenseridae) are highly endangered freshwater fishes. Their eggs (sold as caviar) are one of the most valuable wildlife products in international trade. Concerns of overharvesting and the conservation status of many of the 27 extant species of Acipenseriformes led to all species being included on the CITES Appendices in 1998. Since then international trade in all products and parts from sturgeon and paddlefish has been regulated. However, despite the controls on trade, unsustainable harvesting continues to threaten many populations. Illegal fishing and trade continues to be a threat to the management of these fish. To enforce the regulation of legal trade and prevention of illegal trade, the development of a uniform identification system for parts and derivates of Acipenseriformes has been identified as an urgent requirement. Ideally this system should be suitable for (i) identification at the species-level of caviar and other products from Acipenseriformes; (ii) population identification; (iii) source identification (wild vs aquaculture); and (iv) determining the age of caviar because strict timeframes govern its international trade. This paper reviews the techniques currently available and their potential to be used in an identification system for Acipenseriformes species and their products in trade. A review of all available identification techniques has shown that there is not a single method that can meet all requirements (see i,iv), and it does not appear to be feasible to develop such a method in the near future therefore the most appropriate methods need to be developed for each. Considering the advantages and disadvantages of all techniques reviewed in this document, the following conclusions can be drawn: (i) for the identification of species, approaches are recommended that target mitochondrial cytochrome b sequences (RFLP, nested PCR or direct sequencing). However, they show limitations for the detection of hybrids (although natural hybrids are rare, the number of artificially produced hybrids in aquaculture is increasing) and for the differentiation of the following closely related species complexes: Acipenser gueldenstaedti,Acipenser baerii,Acipenser persicus,Acipenser naccarii; Acipenser medirostris,Acipenser mikadoi; and Scaphirhynchus albus,Scaphirhynchus plathorhynchus,Scaphirhynchus suttkusi; (ii) the identification of different populations of the same species is currently not feasible because genetic data are incomplete for most populations, and stocking and release programmes, which have become more and more common, often result in a mixture of phenotypes and genotypes, thereby impeding the creation and application of such a population identification system; (iii) source identification based on genetic approaches can be excluded at present because there are no genetic differences between wild and hatchery-raised fish. This is the result of the continuing restocking of natural populations with captive fish and vice versa. However, because rearing (i.e. environmental) conditions are different, methods focusing on differences in water quality or food seem to be more appropriate (for example differences in fatty acid composition). So far, very few studies have been conducted and therefore, source identification methods merit further exploration; and (iv) the age of a product in trade cannot be detected by DNA-based methods and protein profiling is undoubtedly impractical due to hard-to-perform, labour-and cost-intensive methods, which are highly susceptible to protein degradation. Arising from the limits discussed above, the next steps in the development of a uniform sturgeon identification system are proposed to be the following: (i) designation of qualified reference laboratories at national levels in (re-) exporting and importing countries. These should be approved through a standardized testing procedure, for instance a ring test on blind samples. Registered laboratories should be published and disseminated and their accreditations should be subject to certain guarantees regarding quality, economic independence and scientific rigour. Operational procedures have to be determined and standardized among reference laboratories; (ii) establishment of reference collections that are accessible to the reference laboratories containing DNA analyses results and information on the location and availability of tissue samples. This is highly recommended as an important step towards a population identification system and indispensable for a general species identification system; (iii) creation of a website access to the reference collections containing the reference database information about genetic samples, comparable to NCBI, which provides background data: sample location; population information; citation; available genetic data; location of archival storage; currently treated and distributed caviar and status of analysis. This website should also be a forum for the exchange of knowledge on and experiences with identification systems, species and population status information, relevant scientific research, etc.; and (iv) the outcome of the trade identification tests should be made available to the reference laboratories for future reference. The universal caviar labelling system could incorporate an indication of the verification of the consignment. In view of the lack of knowledge and the great need to develop a uniform identification system for Acipenseriformes with regard to the importance of the international caviar trade, further scientific guidance and appropriate research is strongly recommended. Progress should be assessed and exchanged on a regular basis. [source] Ecogeographical rules: elements of a synthesisJOURNAL OF BIOGEOGRAPHY, Issue 3 2008Kevin J. Gaston Abstract The development of a more synthetic approach to understanding spatial patterns in biogeography, particularly of the way in which these patterns interact, constitutes a major challenge for the field. Here we propose some key elements of such a synthesis for what can broadly be termed ,ecogeographical rules', that is spatial patterns in biological traits. These include understanding: (1) the different kinds of patterns (intraspecific, interspecific and assemblage), and the distinctions between them; (2) the unifying role that geographical ranges play in linking the patterns together; (3) that this unification can be obscured by the methodological assumptions made in documenting some patterns (e.g. assuming that intraspecific variation does not significantly influence interspecific and assemblage patterns in traits); (4) the implications of other methodological issues for the nature of observed patterns (e.g. how ranges are located on positional or environmental axes for interspecific patterns); (5) the need for further development of models linking different types of traits; (6) the nature of the generality of documented patterns at all levels, and particularly the difference between the frequency with which patterns are documented in the literature and the variety of extant species; and (7) the constraints that the form of intraspecifi patterns place on interspecific and assemblage patterns, and that interspecific patterns place on assemblage patterns. [source] Panbiogeography of Nothofagus (Nothofagaceae): analysis of the main species massingsJOURNAL OF BIOGEOGRAPHY, Issue 6 2006Michael Heads Abstract Aim, The aim of this paper is to analyse the biogeography of Nothofagus and its subgenera in the light of molecular phylogenies and revisions of fossil taxa. Location, Cooler parts of the South Pacific: Australia, Tasmania, New Zealand, montane New Guinea and New Caledonia, and southern South America. Methods, Panbiogeographical analysis is used. This involves comparative study of the geographic distributions of the Nothofagus taxa and other organisms in the region, and correlation of the main patterns with historical geology. Results, The four subgenera of Nothofagus have their main massings of extant species in the same localities as the main massings of all (fossil plus extant) species. These main massings are vicariant, with subgen. Lophozonia most diverse in southern South America (north of Chiloé I.), subgen. Fuscospora in New Zealand, subgen. Nothofagus in southern South America (south of Valdivia), and subgen. Brassospora in New Guinea and New Caledonia. The main massings of subgen. Brassospora and of the clade subgen. Brassospora/subgen. Nothofagus (New Guinea,New Caledonia,southern South America) conform to standard biogeographical patterns. Main conclusions, The vicariant main massings of the four subgenera are compatible with largely allopatric differentiation and no substantial dispersal since at least the Upper Cretaceous (Upper Campanian), by which time the fossil record shows that the four subgenera had evolved. The New Guinea,New Caledonia distribution of subgenus Brassospora is equivalent to its total main massing through geological time and is explained by different respective relationships of different component terranes of the two countries. Global vicariance at family level suggests that Nothofagaceae/Nothofagus evolved largely as the South Pacific/Antarctic vicariant in the breakup of a world-wide Fagales ancestor. [source] Evolution and biogeography of the austral genus Phyllocladus (Podocarpaceae)JOURNAL OF BIOGEOGRAPHY, Issue 10 2004Steven J. Wagstaff Abstract Aim, To infer evolutionary relationships within the genus Phyllocladus and among its close relatives by phylogenetic analysis of DNA sequences. Interpret the inferred relationships in association with the fossil record to examine the origin and diversification of the genus. Location, Australasia. Methods, Phylogenetic analyses of rbcL, matK and internal transcribed spacer (ITS) sequences representing all of the extant species of Phyllocladus and a selection of outgroups from Podocarpaceae and Araucariaceae. Results, The rbcL and matK sequences exhibit little variation within Phyllocladus, but ally its members to Podocarpaceae although its immediate sister remains unclear. The ITS sequences resolve all five species of Phyllocladus and two intraspecific ecotypes of P. alpinus. Main conclusions,Phyllocladus forms a distinct lineage that diverged early in the evolutionary history of Podocarpaceae. The fossil record indicates that the genus was more widely distributed and morphologically diverse during the early Tertiary than at present. Although of Mesozoic origin, the level of sequence variation within Phyllocladus suggests that the extant species radiated during the late Tertiary c. 6.3 ± 0.9 Ma. New Zealand is the present centre of species diversity. [source] Ecological aspects of seed desiccation sensitivityJOURNAL OF ECOLOGY, Issue 2 2003John C. Tweddle Summary 1The ability of seeds to survive desiccation is an important functional trait and is an integral part of plant regeneration ecology. Despite this, the topic has received relatively little attention from ecologists. In this study, we examine the relationships between seed desiccation tolerance and two important aspects of plant regeneration ecology: habitat and dormancy. This is done by comparative analysis of a data set of 886 tree and shrub species from 93 families. 2The proportion of species displaying desiccation sensitive seeds declines as the habitat becomes drier, and possibly also cooler, although the latter observation requires cautious interpretation. Desiccation sensitivity is most common in moist, relatively aseasonal vegetation zones, but is infrequent in, though not absent from arid and highly seasonal habitats. 3The highest frequency of desiccation sensitivity occurs in non-pioneer evergreen rain forest trees, although 48% of the species examined have desiccation tolerant seeds. In contrast, all pioneer taxa within the data set have drying tolerant seeds. 4Desiccation sensitivity is more frequent in seeds that are non-dormant on shedding (c. 31%), than dormant (c. 9%). Highest frequencies of drying tolerance occur in seeds with physical or combinational dormancy, at 99% and 100%, respectively. 5Although there is an association between non-dormancy and desiccation sensitivity in both tropical and temperate zones, the relationship does not appear to be causal. 6Working from the hypothesis that seed desiccation sensitivity represents a derived state in extant species, we use the results to investigate and discuss possible ecological trade-offs and associated fitness advantages. These may explain the hypothesized repeated loss of this trait. The frequent association between large seed size and desiccation sensitivity is also considered. [source] Cope's rule in cryptodiran turtles: do the body sizes of extant species reflect a trend of phyletic size increase?JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 4 2006D. S. MOEN Abstract Cope's rule of phyletic size increase is questioned as a general pattern of body size evolution. Most studies of Cope's rule have examined trends in the paleontological record. However, neontological approaches are now possible due to the development of model-based comparative methods, as well as the availability of an abundance of phylogenetic data. I examined whether the phylogenetic distribution of body sizes in extant cryptodiran turtles is consistent with Cope's rule. To do this, I examined body size evolution in each of six major clades of cryptodiran turtles and also across the whole tree of cryptodirans (n = 201 taxa). Extant cryptodiran turtles do not appear to follow Cope's rule, as no clade showed a significant phyletic body size trend. Previous analyses in other extant vertebrates have also found no evidence for phyletic size increase, which is in contrast to the paleontological data that support the rule in a number of extinct vertebrate taxa. [source] Patterns of speciation in endemic Mexican Goodeid fish: sexual conflict or early radiation?JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 4 2005M. G. RITCHIE Abstract Currently there is much interest in the potential for sexual selection or conflict to drive speciation. Theory proposes that speciation will be accelerated where sexual conflict is strong, particularly if females are ahead because mate choice will accentuate divergence by limiting gene flow. The Goodeinae are a monophyletic group of endemic Mexican fishes with an origin at least as old as the Miocene. Sexual selection is important in the Goodeinae and there is substantial interspecific variability in body morphology, which influences mate choice, allowing inference of the importance of female mate choice. We therefore used this group to test the relationship between sexual dimorphism and speciation rate. We quantified interspecific variation in sexual dimorphism amongst 25 species using a multivariate measure of total morphological differentiation between the sexes that accurately reflects sexual dimorphism driven by female mate choice and also used a mtDNA-based phylogeny to examine speciation rates. Comparative analyses failed to support a significant association between sexual dimorphism and speciation rate. In addition, variation in the time course of speciation throughout the whole clade was also examined using a similar tree containing 34 extant species. A constant rates model for the growth of this clade was rejected, but analyses instead indicated a decline in the rate of speciation over time. These results support the hypothesis of an early expansion of the group, perhaps due to an early radiation influenced by the key innovation of live bearing, or the prevalence of Miocene volcanism. In general, support for the role of sexual selection in generating patterns of speciation is proving equivocal and we argue that vicariance biogeography and adaptive radiations remain the most likely determinants of major patterns of diversification of continental organisms. [source] Evolution of reproductive seasonality in bearsMAMMAL REVIEW, Issue 1 2007THOMAS J. SPADY ABSTRACT 1Of the eight species of Ursidae, six are currently at risk of extinction and the remainder face significant risks to their future survival. One of the greatest threats to bears is human-imposed environmental alteration (e.g. global warming, chemical pollutants, deforestation). An examination of the reproductive biology and phylogeny of the Ursidae reveals reproductive seasonality as a probable adaptation to adverse environmental conditions. 2Seven of the eight extant species exhibit distinct mating and birth seasons, with the most ancient species evolving facultative seasonality as an adaptation to the increasingly seasonal climate of the Pliocene. The remainder of the extant species evolved during the Pleistocene glaciations, under conditions of severe seasonal food restriction. Under these conditions, an obligate mode of seasonality emerged and persists to the present. 3Knowledge of the natural history of seasonal reproduction in the ursids and how it evolved in response to global climatic change provides a context for understanding the ramifications of current environmental change on the reproduction of these important species. [source] Comparative phylogeography of five avian species: implications for Pleistocene evolutionary history in the Qinghai-Tibetan plateauMOLECULAR ECOLOGY, Issue 2 2010Y. QU Abstract Pleistocene climate fluctuations have shaped the patterns of genetic diversity observed in extant species. In contrast to Europe and North America where the effects of recent glacial cycles on genetic diversity have been well studied, the genetic legacy of the Pleistocene for the Qinghai-Tibetan (Tibetan) plateau, a region where glaciation was not synchronous with the North Hemisphere ice sheet maxima, remains poorly understood. Here, we compared the phylogeographical patterns of five avian species on the Qinghai-Tibetan plateau by three mitochondrial DNA fragments: the Tibetan snow finch (Montifringilla adamsi), the Blanford's snow finch (Pyrgilauda blanfordi), the horned lark (Eremophila alpestris), the twite (Carduelis flavirostris) and the black redstart (Phoenicurus ochruros). Our results revealed the three species mostly distributed on the platform region of the plateau that experienced population expansion following the retreat of the extensive glaciation period (0.5,0.175 Ma). These results are at odds with the results from avian species of Europe and North America, where population expansions occurred after Last Glacial Maximum (LGM, 0.023,0.018 Ma). A single refugium was identified in a restricted semi-continuous area around the eastern margin of the plateau, instead of multiple independent refugia for European and North American species. For the other two species distributed on the edges of the plateau (the twite and black redstart), populations were maintained at stable levels. Edge areas are located on the eastern margin, which might have had little or no ice cover during the glaciation period. Thus, milder climate may have mitigated demographic stresses for edge species relative to the extremes experienced by platform counterparts, the present-day ranges of which were heavily ice covered during the glaciation period. Finally, various behavioural and ecological characteristics, including dispersal capacities, habitat preference and altitude specificity along with evolutionary history might have helped to shape different phylogeographical structures appearing in these five species. [source] NEW SPECIES OF PARAPHIOMYS (RODENTIA, THRYONOMYIDAE) FROM THE LOWER MIOCENE OF AS-SARRAR, SAUDI ARABIAPALAEONTOLOGY, Issue 2 2005RAQUEL LÓPEZ ANTOÑANZAS Abstract:, The family Thryonomyidae is represented in the Lower Miocene of Saudi Arabia by a single species, Paraphiomys knolli sp. nov. This new taxon differs from all other thryonomyids in being small, lower molars having a short metalophulid II and an isolated anterolabial cuspid, and upper molars being antero-posteriorly compressed and pentalophodont. A cladistic analysis involving all extinct and extant species of thryonomyids is provided. Paraphiomys knolli branches as the sister-species of Paraphiomys pigotti, type species of the genus. [source] New species of the diatom genus Fryxelliella (Bacillariophyta), Fryxelliella pacifica sp. nov., from the tropical Mexican PacificPHYCOLOGICAL RESEARCH, Issue 3 2008David U. Hernández-Becerril SUMMARY During phytoplankton monitoring of coasts off Salina Cruz, Oaxaca, in the tropical Mexican Pacific, a new species, Fryxelliella pacifica sp. nov., was found and is described in this paper. The species is solitary, with cells of medium size, discoid with three relatively large ocelli on the valve face, located close to the margins (3,5 areolae from the margins) and placed symmetrically. Significantly, it possesses the morphological characters that distinguish the genus Fryxelliella from related genera: the presence of the ,circumferential marginal tube' (siphon marginalis), the external subcircular or subtriangular apertures at the valve margins, and the ,juxtaposed rectangular plates' in the valve mantle. The species that appears to be the most closely related is Fryxelliella floridana Prasad, an extant species and the type of the genus. However Fryxelliella pacifica differs from it (i) the size and shape of the cell; (ii) the size, location and structure of the ocelli (which additionally are not elevated); (iii) the shape and density of the subcircular to subtriangular marginal apertures; (iv) the external morphology of the rimoportulae (short process, two concentric tubes with the outer tube tip as a crown); and (v) it is marine rather than brackish. Externally the rimoportulae have a rather complex structure of two concentric tubes: the exterior tube has a tip divided like a crown. In spite of the fact this species was found in plankton samples, it is considered to inhabit sandy sediments (epipsammic) or as tychoplanktonic. [source] Comparative 3D quantitative analyses of trapeziometacarpal joint surface curvatures among living catarrhines and fossil homininsAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 1 2010M.W. Marzke Abstract Comparisons of joint surface curvature at the base of the thumb have long been made to discern differences among living and fossil primates in functional capabilities of the hand. However, the complex shape of this joint makes it difficult to quantify differences among taxa. The purpose of this study is to determine whether significant differences in curvature exist among selected catarrhine genera and to compare these genera with hominin1 fossils in trapeziometacarpal curvature. Two 3D approaches are used to quantify curvatures of the trapezial and metacarpal joint surfaces: (1) stereophotogrammetry with nonuniform rational B-spline (NURBS) calculation of joint curvature to compare modern humans with captive chimpanzees and (2) laser scanning with a quadric-based calculation of curvature to compare modern humans and wild-caught Pan, Gorilla, Pongo, and Papio. Both approaches show that Homo has significantly lower curvature of the joint surfaces than does Pan. The second approach shows that Gorilla has significantly more curvature than modern humans, while Pongo overlaps with humans and African apes. The surfaces in Papio are more cylindrical and flatter than in Homo. Australopithecus afarensis resembles African apes more than modern humans in curvatures, whereas the Homo habilis trapezial metacarpal surface is flatter than in all genera except Papio. Neandertals fall at one end of the modern human range of variation, with smaller dorsovolar curvature. Modern human topography appears to be derived relative to great apes and Australopithecus and contributes to the distinctive human morphology that facilitates forceful precision and power gripping, fundamental to human manipulative activities. Am J Phys Anthropol, 2010. © 2009 Wiley-Liss, Inc. 1 The term "hominin" refers to members of the tribe Hominini, which includes modern humans and fossil species that are related more closely to modern humans than to extant species of chimpanzees, Wood and Lonergan (2008). Hominins are in the family Hominidae with great apes. [source] Beyond Gorilla and Pongo: Alternative models for evaluating variation and sexual dimorphism in fossil hominoid samplesAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 2 2009Jeremiah E. Scott Abstract Sexual size dimorphism in the postcanine dentition of the late Miocene hominoid Lufengpithecus lufengensis exceeds that in Pongo pygmaeus, demonstrating that the maximum degree of molar size dimorphism in apes is not represented among the extant Hominoidea. It has not been established, however, that the molars of Pongo are more dimorphic than those of any other living primate. In this study, we used resampling-based methods to compare molar dimorphism in Gorilla, Pongo, and Lufengpithecus to that in the papionin Mandrillus leucophaeus to test two hypotheses: (1) Pongo possesses the most size-dimorphic molars among living primates and (2) molar size dimorphism in Lufengpithecus is greater than that in the most dimorphic living primates. Our results show that M. leucophaeus exceeds great apes in its overall level of dimorphism and that L. lufengensis is more dimorphic than the extant species. Using these samples, we also evaluated molar dimorphism and taxonomic composition in two other Miocene ape samples,Ouranopithecus macedoniensis from Greece, specimens of which can be sexed based on associated canines and P3s, and the Sivapithecus sample from Haritalyangar, India. Ouranopithecus is more dimorphic than the extant taxa but is similar to Lufengpithecus, demonstrating that the level of molar dimorphism required for the Greek fossil sample under the single-species taxonomy is not unprecedented when the comparative framework is expanded to include extinct primates. In contrast, the Haritalyangar Sivapithecus sample, if itrepresents a single species, exhibits substantially greater molar dimorphism than does Lufengpithecus. Given these results, the taxonomic status of this sample remains equivocal. Am J Phys Anthropol, 2009. © 2009 Wiley-Liss, Inc. [source] Ecogeographic size variation in small-bodied subfossil primates from Ankilitelo, Southwestern MadagascarAMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, Issue 2 2007Kathleen M. Muldoon Abstract Variation in body size is well documented for both extant and extinct Malagasy primates, and appears to be correlated with geographic patterns of resource seasonality. Less attention has been paid to extant lemurs in subfossil collections, although it has been suggested that subfossil forms of extant species are characterized by greater size than their modern counterpart. This trend of phyletic size change has been related to climate change, habitat fragmentation, or human hunting. However, space- and time-averaging in the subfossil samples of previous studies may have obscured more general ecogeographic patterns underlying these size differences. Our objective is to examine size variation in subfossil still-extant primates within a regional comparative context to determine if subfossil and living forms conform to similar ecogeographic patterns. We report on the subfossil still-extant primate assemblage from Ankilitelo, southwestern Madagascar (,500 yr BP) to test this hypothesis. The Ankilitelo primates were compared with museum specimens of known locality. Extant taxa were assigned to one of five distinct ecogeographic regions, including spiny thicket, dry deciduous forest, succulent woodland, lowland and subhumid rainforest. Comparisons of tooth size in extant lemurs reveal significant geographical patterns of variation within genera. In general, the primates from Ankilitelo are indeed larger than their modern counterpart. However, these differences fit an ecoregional model of size variation, whereby Ankilitelo species are comparable in size to living forms inhabiting ecoregions present near the cave today. This suggests that Malagasy primates have been subjected to similar patterns of resource seasonality for at least 500 years. Am J Phys Anthropol, 2007. © 2007 Wiley-Liss, Inc. [source] Ecological and evolutionary components of body size: geographic variation of venomous snakes at the global scaleBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 1 2009LEVI CARINA TERRIBILE Biogeographical patterns of animal body size and the environmental and evolutionary mechanisms that may be driving them have been broadly investigated in macroecology, although just barely in ectotherms. We separately studied two snake clades, Viperidae and Elapidae, and used phylogenetic eigenvector regression and ordinary least squares multiple regression methods to perform a global grid-based analysis of the extent at which the patterns of body size (measured for each species as its log10 -transformed maximum body length) of these groups are phylogenetically structured or driven by current environment trends. Phylogenetic relatedness explained 20% of the across-species size variation in Viperidae, and 59% of that of Elapidae, which is a more recent clade. Conversely, when we analysed spatial trends in mean body size values (calculated for each grid-cell as the average size of its extant species), an environmental model including temperature, precipitation, primary productivity (as indicated by the global vegetation index) and topography (range in elevation) explained 37.6% of the variation of Viperidae, but only 4.5% of that of Elapidae. These contrasted responses of body size patterns to current environment gradients are discussed, taking into consideration the dissimilar evolutionary histories of these closely-related groups. Additionally, the results obtained emphasize the importance of the need to start adopting deconstructive approaches in macroecology. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 98, 94,109. [source] Molecular and morphological supertree of stony corals (Anthozoa: Scleractinia) using matrix representation parsimonyBIOLOGICAL REVIEWS, Issue 4 2005Alexander M. Kerr ABSTRACT The supertree algorithm matrix representation with parsimony was used to combine existing hypotheses of coral relationships and provide the most comprehensive species-level estimate of scleractinian phylogeny, comprised of 353 species (27% of extant species), 141 genera (63%) and 23 families (92%) from all seven suborders. The resulting supertree offers a guide for future studies in coral systematics by highlighting regions of concordance and conflict in existing source phylogenies. It should also prove useful in formal comparative studies of character evolution. Phylogenetic effort within Scleractinia has been taxonomically uneven, with a third of studies focussing on the Acroporidae or its most diverse genera. Sampling has also been geographically non-uniform, as tropical, reef-forming taxa have been considered twice as often as non-reef species. The supertree indicated that source trees concur on numerous aspects of coral relationships, such as the division between robust versus complex corals and the distant relationship between families in Archaeocoeniina. The supertree also supported the existence of a large, taxonomically diverse and monophyletic group of corals with many Atlantic representatives having exsert corallites. Another large, unanticipated clade consisted entirely of solitary deep-water species from three families. Important areas of ambiguity include the relationship of Astrocoeniidae to Pocilloporidae and the relative positions of several, mostly deep-water genera of Caryophylliidae. Conservative grafting of species at the base of congeneric groups with uncontroversial monophyletic status resulted in a more comprehensive, though less resolved tree of 1016 taxa. [source] A New Species Group in the Genus Tanytarsus van der Wulp (Diptera: Chironomidae) Based on a Fossil Record from Baltic AmberACTA GEOLOGICA SINICA (ENGLISH EDITION), Issue 4 2010Wojciech GI Abstract: A new fossil chlronomid, Tanytarsus serafini, found in Baltic amber is described and illustrated based on adult males. The new species and similar extant species of the genus Tanytarsus van der Wulp are compared. Due to several distinct characters of wing, legs and hypopygium, a new species group for Tanytarsus serafini is proposed, and its diagnostic features are evaluated. [source] Primate Numerical Competence: Contributions Toward Understanding Nonhuman CognitionCOGNITIVE SCIENCE - A MULTIDISCIPLINARY JOURNAL, Issue 3 2000Sarah T. Boysen Nonhuman primates represent the most significant extant species for comparative studies of cognition, including such complex phenomena as numerical competence, among others. Studies of numerical skills in monkeys and apes have a long, though somewhat sparse history, although questions for current empirical studies remain of great interest to several fields, including comparative, developmental, and cognitive psychology; anthropology; ethology; and philosophy, to name a few. In addition to demonstrated similarities in complex information processing, empirical studies of a variety of potential cognitive limitations or constraints have provided insights into similarities and differences across the primate order, and continue to offer theoretical and pragmatic directions for future research. An historical overview of primate numerical studies is presented, as well as a summary of the 17-year research history, including recent findings, of the Comparative Cognition Project at The Ohio State University Chimpanzee Center. Overall, the archival literature on number-related skills and counting in nonhuman primates offers important implications for revising our thinking about comparative neuroanatomy, cross-species (human/ape) cognitive similarities and differences, and the evolution of cognition represented by the primate continuum. [source] | |||||||||||||||||||||||||