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Selected AbstractsGuidelines for the descriptive presentation and statistical analysis of contact allergy dataCONTACT DERMATITIS, Issue 2 2004Wolfgang Uter The present guidelines aim to support clinical researchers in adequately presenting data on contact allergy, and to use statistical tests appropriate for their data. A description of the mode of selection of patients, and of their relevant demographic details, is an essential prerequisite for the correct interpretation of study results. Proportions and rates, if regarded as estimate of these parameters of a target populations, should normally be supplemented with confidence intervals to address precision. Concordance, i.e., agreement between two ratings in a dependent sample, must be quantified with a chance-corrected measure such as Cohen's kappa coefficient. If the diagnostic quality of an outcome is being assessed, standard measures like sensitivity and specificity, as well as the prevalence-dependent positive and negative predictive values should be calculated. Often, contact allergy to a certain substance depends on several factors. In this situation, depending on the research question, techniques like stratification, standardization or multifactorial analysis should be employed. With increasing complexity of statistical description and analysis, consulting with a biostatistician is often mandatory. [source] Changes in gene expression and morphology of mouse embryonic stem cells on differentiation into insulin-producing cells in vitro and in vivoDIABETES/METABOLISM: RESEARCH AND REVIEWS, Issue 5 2009Ortwin Naujok Abstract Background Embryonic stem (ES) cells have the potential to produce unlimited numbers of surrogate insulin-producing cells for cell replacement therapy of type 1 diabetes mellitus. The impact of the in vivo environment on mouse ES cell differentiation towards insulin-producing cells was analysed morphologically after implantation. Methods ES cells differentiated in vitro into insulin-producing cells according to the Lumelsky protocol or a new four-stage differentiation protocol were analysed morphologically before and after implantation for gene expression by in situ reverse transcription polymerase chain reaction and protein expression by immunohistochemistry and ultrastructural analysis. Results In comparison with nestin positive ES cells developed according to the reference protocol, the number of ES cells differentiated with the four-stage protocol increased under in vivo conditions upon morphological analysis. The cells exhibited, in comparison to the in vitro situation, increased gene and protein expression of Pdx1, insulin, islet amyloid polypeptide (IAPP), the GLUT2 glucose transporter and glucokinase, which are functional markers for glucose-induced insulin secretion of pancreatic beta cells. Renal sub-capsular implantation of ES cells with a higher degree of differentiation achieved by in vitro differentiation with a four-stage protocol enabled further significant maturation for the beta-cell-specific markers, insulin and the co-stored IAPP as well as the glucose recognition structures. In contrast, further in vivo differentiation was not achieved with cells differentiated in vitro by the reference protocol. Conclusions A sufficient degree of in vitro differentiation is an essential prerequisite for further substantial maturation in a beta-cell-specific way in vivo, supported by cell-cell contacts and vascularisation. Copyright © 2009 John Wiley & Sons, Ltd. [source] Nuclear morphometry and texture analysis of B-cell non-Hodgkin lymphoma: Utility in subclassification on cytosmearsDIAGNOSTIC CYTOPATHOLOGY, Issue 2 2010Shilpa Gupta M.D. Abstract Non-Hodgkin lymphoma (NHL) is a heterogeneous group of lymphoid neoplasms and accurate subclassification is an essential prerequisite for proper management of patients. This study was aimed at evaluating the utility of nuclear morphometry and textural features on cytology smears to classify the cases of NHL on aspiration cytology. Fine needle aspiration smears of 50 cases of B-cell NHL were included. Various morphometric and texture parameters were obtained by manually tracing the nuclei on digitized images in each case and discriminant analysis performed using various features taken individually as well as all together. The percentage of cells correctly classified to a particular NHL subtype using the discriminant functions so obtained was noted. Our results show that discriminant analysis done on size parameters could correctly classify a greater number of cells than on shape parameters (36.4% vs. 21.2%, respectively). Texture parameters based on single pixel values (first order texture) were inferior (42.8%) to those based on pair of pixels (58.7%) in subtyping of cells. Discriminant analysis based on color parameters was more effective (61.9%) as compared to rest of the morphometric and textural parameters. Using all the morphometric and textural parameters together, 83.3% of cells could be correctly classified to a particular NHL subtype. The present study, perhaps the first study of detailed morphometric analysis on cytosmears, shows that satisfactory classification of NHL on aspiration cytology is possible using nuclear morphometry and textural parameters considered together. These results are promising for further studies on this subject and development of automated cytodiagnosis. Diagn. Cytopathol. 2010. © 2009 Wiley-Liss, Inc. [source] Radiological interpretation of the navicular boneEQUINE VETERINARY EDUCATION, Issue 5 2008S. Dyson Summary Acquisition of a sufficient number of high quality radiographic views is an essential prerequisite to accurate radiological interpretation of the navicular bone. This requires appropriate preparation of the foot, careful attention to limb position and to both centring and direction of the x-ray beam, according to hoof capsule conformation. Artefacts are easily created. Potentially significant radiological abnormalities include: entheseiophytes at the proximomedial and proximolateral aspect of the bone; proximal or distal extension of the flexor border of the bone, distal border fragments, 8 or more large and variably shaped distal border radiolucent zones; discrete radiolucent areas in the spongiosa with or without detectable communication with the flexor cortex; new bone at the sagittal ridge; increased thickness of the flexor cortex; sclerosis of the spongiosa; and a bipartite bone. [source] A strategy for correlative microscopy of large skin samples: towards a holistic view of axillary skin complexityEXPERIMENTAL DERMATOLOGY, Issue 1 2008Katrin Wilke Abstract:, Knowledge about the structural elements of skin and its appendices is an essential prerequisite for understanding their complex functions and interactions. The hence necessary morphological description across several orders of scale not only requires the investigation at the light microscopic level but also ultrastructural investigation, ideally on the identical sample. For a correlative and multimodal observation one unique preparation protocol is mandatory. As a compromise between sample sizes of >500 ,m in diameter on the one hand and optimal preservation of antigenicity and morphology on the other, we developed a new preparation protocol that allows (i) 3D reconstruction of the resin-embedded sample by confocal light microscopy prior to (ii) direct immunolocalization of target proteins within selected sample planes by light and fluorescence microscopy or transmission electron microscopy. Alternatively, (iii) serial cryosections of the frozen sample can be taken for characterizing the sample in toto. With this unique approach we were able to fully demonstrate the structural complexity of axillary skin samples, increasing the structural resolution from 3D reconstruction of the whole gland up to ultrastructural investigations at the subcellular level. We could demonstrate that axillary sweat glands are not separately distributed, as has been assumed to date; instead, they seem to be intricately twisted into one another. This promotes the concept of a complex axillary sweat gland organ instead of single sweat gland entities. [source] Genetic population structure of marine fish: mismatch between biological and fisheries management unitsFISH AND FISHERIES, Issue 4 2009Henning Reiss Abstract An essential prerequisite of a sustainable fisheries management is the matching of biologically relevant processes and management action. In fisheries management and assessment, fish stocks are the fundamental biological unit, but the reasoning for the operational management unit is often indistinct and mismatches between the biology and the management action frequently occur. Despite the plethora of population genetic data on marine fishes, to date little or no use is made of the information, despite the fact that the detection of genetic differentiation may indicate reproductively distinct populations. Here, we discuss key aspects of genetic population differentiation in the context of their importance for fisheries management. Furthermore, we evaluate the population structure of all 32 managed marine fish species in the north-east Atlantic and relate this structure to current management units and practice. Although a large number of studies on genetic population structure have been published in the last decades, data are still rare for most exploited species. The mismatch between genetic population structure and the current management units found for six species (Gadus morhua, Melanogrammus aeglefinus, Merlangius merlangus, Micromesistius poutassou, Merluccius merluccius and Clupea harengus), emphasizes the need for a revision of these units and questions the appropriateness of current management measures. The implementation of complex and dynamic population structures into novel and less static management procedures should be a primary task for future fisheries management approaches. [source] Role for CXCR2 and CXCL1 on glia in multiple sclerosisGLIA, Issue 1 2006Kakuri M. Omari Abstract As part of a need to understand myelin repair mechanisms, molecular pathways underlying oligodendrocyte behavior and central nervous system (CNS) remyelination are currently key topics in multiple sclerosis (MS). In the present study, we report expression of a chemoattractant receptor of the immune system, the chemokine receptor, CXCR2, on normal and proliferating oligodendrocytes in active MS lesions. Proliferating oligodendrocytes were occasionally associated with reactive astrocytes positive for CXCL1 (GRO-,), the ligand for CXCR2. CXCL1 expression was not seen on astrocytes in control and normal CNS tissue, while CXCR2 expression was constitutive on oligodendrocytes. At the functional level, following stimulation with the proinflammatory cytokine, interleukin-1, (IL-1,), we found high-level synthesis of CXCL1 by human fetal astrocytes in vitro. In contrast, human oligodendrocytes in culture expressed the receptor, CXCR2, constitutively. We propose that the concurrence of CXCR2 on oligodendrocytes and induced CXCL1 on hypertrophic astrocytes in MS provides a novel mechanism for recruitment of oligodendrocytes to areas of damage, an essential prerequisite for lesion repair in this devastating human condition. © 2005 Wiley-Liss, Inc. [source] Home management of haemophiliaHAEMOPHILIA, Issue 2 2004J. M. Teitel Summary., The demonstrated benefits of home care for haemophilia include improved quality of life, less pain and disability, fewer hospitalizations, and less time lost from work or school. Although reduced mortality has not been demonstrated, the substantial increase in longevity since the early 1980s correlates with the introduction of home treatment and prophylaxis programmes. These programmes must be designed and monitored by haemophilia treatment centres (HTC), which are staffed with professionals with broad and complementary expertise in the disease and its complications. In return, patients and their families must be willing to accept the reciprocal responsibilities that come from administering blood products or their recombinant equivalents at home. Patients with inhibitors to factors VIII or IX pose special challenges, but these complications do not obviate participation in home care programmes. Home care was an essential prerequisite to the introduction of effective prophylactic factor replacement therapy. Prophylaxis offers significant improvements in quality of life, but requires a substantial commitment. The use of implantable venous access devices can eliminate some of the difficulty and discomfort of peripheral venous access in small children, but brings additional risks. The future holds the promise of factor concentrates for home use that have longer half-lives, or can be administered by alternate routes. Knowledge of patient genotypes may allow treatments tailored to avoid complications such as inhibitor development. Gene therapy trials, which are currently ongoing, will ultimately lead to gene-based treatments as a complement to traditional protein-based therapy. [source] Geostatistical characterization of the spatial distribution of Grapholita molesta and Anarsia lineatella males in an agricultural landscapeJOURNAL OF APPLIED ENTOMOLOGY, Issue 2 2006A. Sciarretta Abstract:, The results obtained in spatial analysis of pheromone trap catches of oriental fruit moth, Grapholita molesta (Busck) and Peach twig borer, Anarsia lineatella (Zeller), are reported. The studies were performed in the Molise region, central Italy, during 2002 and 2003. Local distributions of oriental fruit moth and peach twig borer males were considered in a heterogeneous landscape. The aim of the study was to determine the temporal and spatial variation in distribution and abundance of the insect pests inside small plots of fruit orchards (apple, kiwi, peach, pear and plum fruits) and outside (in field crops, irrigation channels, hedgerows and a river), and to evaluate the importance of the host plants in relation to the adult distributions. Results showed that the main ,hot spot' for both lepidopterous pests was in a stone fruit orchard in the northern zone of the study area; other infested areas were in stone orchards and, in the case of A. lineatella, also in plum orchards. The river seems to act as a barrier rather than an ecological corridor. The observed spatio-temporal distributions of G. molesta and A. lineatella differed and were determined mainly by the location of the most important host plants and by the tendency of males to move in the environment, i.e. inside and outside the breeding and mating sites. Adequate knowledge of these spatial processes should be considered as an essential prerequisite for integrated pest management programmes in a precision farming approach. [source] Determination of mean free path for energy loss and surface oxide film thickness using convergent beam electron diffraction and thickness mapping: a case study using Si and P91 steelJOURNAL OF MICROSCOPY, Issue 2 2006D. R. G. MITCHELL Summary Determining transmission electron microscope specimen thickness is an essential prerequisite for carrying out quantitative microscopy. The convergent beam electron diffraction method is highly accurate but provides information only on the small region being probed and is only applicable to crystalline phases. Thickness mapping with an energy filter is rapid, maps an entire field of view and can be applied to both crystalline and amorphous phases. However, the thickness map is defined in terms of the mean free path for energy loss (,), which must be known in order to determine the thickness. Convergent beam electron diffraction and thickness mapping methods were used to determine , for two materials, Si and P91 steel. These represent best- and worst-case scenario materials, respectively, for this type of investigation, owing to their radically different microstructures. The effects of collection angle and the importance of dynamical diffraction contrast are also examined. By minimizing diffraction contrast effects in thickness maps, reasonably accurate (±15%) values of , were obtained for P91 and accuracies of ±5% were obtained for Si. The correlation between the convergent beam electron diffraction-derived thickness and the log intensity ratios from thickness maps also permits estimation of the thickness of amorphous layers on the upper and lower surfaces of transmission electron microscope specimens. These estimates were evaluated for both Si and P91 using cross-sectional transmission electron microscopy and were found to be quite accurate. [source] Transport characteristics of N -acetyl- l -aspartate in rat astrocytes: involvement of sodium-coupled high-affinity carboxylate transporter NaC3/NaDC3-mediated transport systemJOURNAL OF NEUROCHEMISTRY, Issue 3 2005Takuya Fujita Abstract We investigated in the present study the transport characteristics of N -acetyl- l -aspartate in primary cultures of astrocytes from rat cerebral cortex and the involvement of NA+ -coupled high-affinity carboxylate transporter NaC3 (formerly known as NaDC3) responsible for N -acetyl- l -aspartate transport. N -acetyl- l -aspartate transport was NA+ -dependent and saturable with a Michaelis,Menten constant (Km) of ,110 µm. NA+ -activation kinetics revealed that the NA+ to- N -acetyl- l -aspartate stoichiometry was 3 : 1 and concentration of Na+ necessary for half-maximal transport (KNAm) was 70 mm. NA+ -dependent N -acetyl- l -aspartate transport was competitively inhibited by succinate with an inhibitory constant (Ki) of 14.7 µm, which was comparable to the Km value of NA+ -dependent succinate transport (29.4 µm). l -Aspartate also inhibited NA+ -dependent [14C]N -acetyl- l -aspartate transport with relatively low affinity (Ki = 2.2 mm), whereas N -acetyl- l -aspartate was not able to inhibit NA+ -dependent aspartate transport in astrocytes. In addition, Li+ was found to have a significant inhibitory effect on the NA+ -dependent N -acetyl- l -aspartate transport in a concentration-dependent manner. Furthermore, RT,PCR and western blot analyses revealed that NaC3 is expressed in primary cultures of astrocytes. Taken collectively, these results indicate that NaC3 expressed in rat cerebrocortical astrocytes is responsible for NA+ -dependent N -acetyl- l -aspartate transport. This transporter is likely to be an essential prerequisite for the metabolic role of N -acetyl- l -aspartate in the process of myelination. [source] Real-time XRD Investigations During the Formation of Cu(IngGa)Se2 Thin FilmsPARTICLE & PARTICLE SYSTEMS CHARACTERIZATION, Issue 6 2005Frank Hergert Abstract Knowledge of the solid-state reactions providing the synthesis of the absorber material Cu(IngGa)Se2 well below its melting point is an essential prerequisite for the further optimization of the technologically relevant production processes. Therefore, powder XRD has been applied as nondestructive tool to follow chemical solide-state reactions in-situ. Subsequent Rietveld refinement provides the quantitative phase evolution time. [source] Control of single quantum dot emission characteristics and fine structure by lateral electric fieldsPHYSICA STATUS SOLIDI (B) BASIC SOLID STATE PHYSICS, Issue 2 2009S. M. Ulrich Abstract The spontaneous emission characteristics of individual self-assembled (In,Ga)As/GaAs quantum dots have been investigated under the application of a tunable electric field in the lateral growth plane. For the neutral excitonic and bi-excitonic as well as a singly-charged (trionic) QD carrier configuration, similar quantum-confined Stark effects could be observed, thus enabling a direct and comparative determination of corresponding polarizability values ,. In addition we have applied a refined detection technique of high-resolution Fabry,Pérot interferometry on single QDs to investigate the anisotropy-induced excitonic fine structure and to monitor its tunability under a lateral electric field. Whereas most quantum dots reveal an oscillatory-type modulation and partial reduction in fine structure under the applied field, we also demonstrate the case of a selected QD where the initial fine structure could even be reversibly tuned down to zero. This fine structure tunability of single QDs represents an essential prerequisite for the realization of individually controlled entangled photon sources in the future. (© 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Convergence study of a Schrödinger-equation algorithm and structure-factor determination from the wavefunctionACTA CRYSTALLOGRAPHICA SECTION A, Issue 4 2008Kostas Bethanis The algorithm [Bethanis, Tzamalis, Hountas & Tsoucaris (2002). Acta Cryst. A58, 265,269] which reformulates the quantum-mechanical problem of solving a Schrödinger (S) equation in a crystallographic context has been upgraded and tested for many aspects of convergence. The upgraded algorithm in reciprocal space aims at determining a wavefunction ,H such that (a) ,H fulfils the S equation within certain precision and (b) ,H minimizes by least squares the differences between the calculated structure factors from the wavefunction and the observed ones. Calculations have been made with three molecules (11, 41 and 110 non-H atoms in the asymmetric unit) for different numbers of initially given phases. Three main questions have been addressed: (I) Does the iterative calculation of the wavefunction converge? (II) Do the calculated wavefunctions converge to a unique set of ,H values independent of the initial random set of ,H? (III) Is the calculated ,H set a good approximation of a wavefunction able to produce within certain errors the correct values of the phases of the structure factors? Concerning questions (I) and (II), our results give a strong hint about fast convergence to a unique wavefunction independent of the arbitrary starting wavefunction. This is an essential prerequisite for practical applications. For question (III) in the case closer to the ab initio situation, the final mean phase error, respectively, for the three structures is 3, 26 and 28°. The combination of (a) and (b) in the upgraded algorithm has been proved crucial especially for the results concerning the larger structures. [source] Action Mechanisms of the Secondary Metabolite Euplotin C: Signaling and Functional Role in EuplotesTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 5 2008FRANCESCA TRIELLI ABSTRACT. Among secondary metabolites, the acetylated hemiacetal sesquiterpene euplotin C has been isolated from the marine, ciliated protist Euplotes crassus, and provides an effective mechanism for reducing populations of potential competitors through its cytotoxic properties. However, intracellular signaling mechanisms and their functional correlates mediating the ecological role of euplotin C are largely unknown. We report here that, in E. vannus (an Euplotes morphospecies that does not produce euplotin C and shares with E. crasssus the same interstitial habitat), euplotin C rapidly increases the intracellular concentration of both Ca2+ and Na+, suggesting a generalized effect of this metabolite on cation transport systems. In addition, euplotin C does not induce oxidative stress, but modulates the electrical properties of E. vannus through an increase of the amplitude of graded action potentials. These events parallel the disassembling of the ciliary structures, the inhibition of cell motility, the occurrence of aberrant cytoplasmic vacuoles, and the rapid inhibition of phagocytic activity. Euplotin C also increases lysosomal pH and decreases lysosomal membrane stability of E. vannus. These results suggest that euplotin C exerts a marked disruption of those homeostatic mechanisms whose efficiency represents the essential prerequisite to face the challenges of the interstitial environment. [source] Smoke and Mirrors: Inverting the Discourse on TobaccoANTIPODE, Issue 4 2010Marv Waterstone Abstract:, Understanding the mechanisms that construct and maintain the taken-for-granted, "common sense" understandings of everyday life is an essential prerequisite for reconfiguring conditions in more progressive directions. Highlighting particular moments, when these processes can be made visible, and drawing appropriate insights from such interrogations is useful not only for illuminating the fundamental malleability of "common sense" (itself a crucial element of change), but also for providing suggestive strategies and tactics for effectuating change. Here the construction and reconstruction of the "common sense" around tobacco is offered as an instructive case. [source] Comparison of 11 endogenous control genes for normalization of mRNA obtained from paraffin-embedded tissuesAPMIS, Issue 12 2009REKHA PAI Real-time reverse transcriptase PCR (RT-PCR) based assays are being increasingly used in characterization of gene expression. Good quality mRNA is an essential prerequisite for such assays. While fresh tissues provide quality mRNA, the same may not be true of tissues which are formalin-fixed and paraffin-embedded (FFPE). This emphasizes the need to identify a good endogenous control gene to normalize for differences in quality and RNA recovery. We attempted to characterize gene expression patterns of 11 commonly used endogenous control genes among 20 FFPE tissues (both neoplastic and normal). Pearson's coefficient of correlation was determined by comparing the expression of each gene against the mean expression of all other genes. ,2 microglobulin (,2M) and ,-actin (,A) (r = 0.95 and 0.94, respectively) were found to be stably expressed across all tissues. However, ,A had greater accuracy (2 × SD) than ,2M and therefore may be a better choice of an endogenous control for experiments that require normalization while using FFPE tissues. [source] Root canal morphology and its relationship to endodontic proceduresENDODONTIC TOPICS, Issue 1 2005Frank J. Vertucci The hard tissue repository of the human dental pulp takes on numerous configurations and shapes. A thorough knowledge of tooth morphology, careful interpretation of angled radiographs, proper access preparation and a detailed exploration of the interior of the tooth are essential prerequisites for a successful treatment outcome. Magnification and illumination are aids that must be utilized to achieve this goal. This article describes and illustrates tooth morphology and discusses its relationship to endodontic procedures. A thorough understanding of the complexity of the root canal system is essential for understanding the principles and problems of shaping and cleaning, for determining the apical limits and dimensions of canal preparations, and for performing successful microsurgical procedures. [source] | ||||||||||||||||