Home About us Contact
|
Home About us Contact | ||
|
|
||
Ecological Niches (ecological + niche)
Kinds of Ecological Niches Terms modified by Ecological Niches Selected AbstractsEcological niche partitioning in the picoplanktonic green alga Micromonas pusilla: evidence from environmental surveys using phylogenetic probesENVIRONMENTAL MICROBIOLOGY, Issue 9 2008Elodie Foulon Summary Very few studies have analysed the niches of pelagic protist in details. This is because for most protists, both an accurate species definition and methods for routine detection and quantification of cells are lacking. The morphospecies Micromonas pusilla, a marine unicellular green alga, is the most ubiquitous and cosmopolitan picoeukaryote described to date. This species comprises several independent genetic lineages or clades, which are not currently distinguishable based on comparison of their morphology or biogeographical distribution. Molecular probes were used to detect and quantify the genetic clades of M. pusilla in samples from temperate, polar and tropical environments in order to assess potential ecological niche partitioning. The three clades were detected in all biogeographical regions studied and were commonly found in sympatry. Cell abundances recorded for clades A and B were high, especially at coastal stations. Clade C, when detected, was always at low abundances and is suggested to be a low-light clade. Shifts in the contribution of clades to total M. pusilla abundance were observed along environmental gradients, both at local and basin-wide scales. This suggests that the phylogenetic clades occupy specific niches and confirms the existence of cryptic species within the morphospecies M. pusilla. Parameters which can precisely explain the distribution of these cryptic species remain to be elucidated. [source] Accelerated nervous system development contributes to behavioral efficiency in the laboratory mouse: A behavioral review and theoretical proposalDEVELOPMENTAL PSYCHOBIOLOGY, Issue 3 2001Ian Q. Whishaw Abstract The emergence of the laboratory mouse as a favored species for genetic research has posed a number of problems for scientists interested in the reflection of genetic influences in mouse behavior. It is commonly thought that rat behavior, which has been studied more extensively than mouse behavior, could be easily generalized to mice. In this article, a number of categories of behavior displayed by the mouse (motor, spatial, defensive, social) are reviewed and contrasted with the same categories of behavior displayed by the rat. The comparison suggests that mouse behavior is simpler and more dependent upon elementary actions than the behavior of the rat. We suggest that the behavioral simplification in the mouse adapts it for a different ecological niche than that occupied by the rat. We propose that this simplification may be mediated by accelerated brain maturation during development. We further propose that this developmental acceleration in the mouse renders it less dependent upon complex social behavior and plastic nervous system changes associated with learning than the rat. This difference poses problems for the development of relevant methods of behavioral analysis and interpretation. Since the mouse's biological adaptations will be reflected in laboratory behavior, suggestions are made for behavioral approaches to the study and interpretation of mouse behavior. © 2001 John Wiley & Sons, Inc. Dev Psychobiol 39: 151,170, 2001 [source] GIS-based niche models identify environmental correlates sustaining a contact zone between three species of European vipersDIVERSITY AND DISTRIBUTIONS, Issue 3 2008F. Martínez-Freiría ABSTRACT The current range of European vipers is mostly parapatric but local-scale allopatric distribution is common and few cases of sympatry are known. In the High Course of Ebro River, northern Spain, there is a contact zone between Vipera aspis, V. latastei, and V. seoanei. Sympatry was detected between aspis and latastei and also specimens with intermediate morphological traits. Presence-data at a local scale (1 × 1 km) and ecological niche-based models manipulated in a GIS were used to (1) identify how environmental factors correlate with the distribution of the three vipers and with the location of the sympatry area, and (2) identify potential areas for viper occurrence and sympatry. Ensemble for casting with 10 Maximum Entropy models identified a mixture of topographical (altitude, slope), climatic (precipitation, evapotranspiration, and minimum and maximum temperature), and habitat factors (land cover) as predictors for viper occurrence. Similar predicted probabilities according to the variation of some environmental factors (indicating probable sympatry) were observed only for aspis-latastei and aspis-seoanei. In fact, areas of probable occurrence of vipers were generally allopatric but probable sympatry between vipers was identified for aspis-latastei in 76 UTM 1 × 1 km squares, for aspis-seoanei in 23 squares, and latastei-seoanei in two squares. Environmental factors correlate with the location of this contact zone by shaping the species range: some enhance spatial exclusion and constrain distribution to spatially non-overlapping ranges, while others allow contact between species. The distribution in the contact zone apparently results from the balance between the pressures exerted by the different environmental factors and in the sympatry area probably by interspecific competition. Further ecological and genetical data are needed to evaluate the dynamics of the probable hybrid zone. GIS and niche-modelling tools proved to be powerful tools to identify environmental factors sustaining the location of contact zones. [source] The tri-trophic niche concept and adaptive radiation of phytophagous insectsECOLOGY LETTERS, Issue 12 2005Michael S. Singer Abstract A conceptual divide exists between ecological and evolutionary approaches to understanding adaptive radiation, although the phenomenon is inherently both ecological and evolutionary. This divide is evident in studies of phytophagous insects, a highly diverse group that has been frequently investigated with the implicit or explicit goal of understanding its diversity. Whereas ecological studies of phytophagous insects increasingly recognize the importance of tri-trophic interactions as determinants of niche dimensions such as host-plant associations, evolutionary studies typically neglect the third trophic level. Here we attempt to reconcile ecological and evolutionary approaches through the concept of the ecological niche. We specifically present a tri-trophic niche concept as a foil to the traditional bi-trophic niche concept for phytophagous insects. We argue that these niche concepts have different implications for understanding herbivore community structure, population divergence, and evolutionary diversification. To this end, we offer contrasting empirical predictions of bi- and tri-trophic niche concepts for patterns of community structure, the process of population divergence, and patterns of evolutionary diversification of phytophagous insects. [source] Towards clarification of the biological role of microcystins, a family of cyanobacterial toxinsENVIRONMENTAL MICROBIOLOGY, Issue 4 2007Daniella Schatz Summary Microcystins constitute a serious threat to the quality of drinking water worldwide. These protein phosphatase inhibitors are formed by various cyanobacterial species, including Microcystis sp. Microcystins are produced by a complex microcystin synthetase, composed of peptide synthetases and polyketide synthases, encoded by the mcyA-J gene cluster. Recent phylogenetic analysis suggested that the microcystin synthetase predated the metazoan lineage, thus dismissing the possibility that microcystins emerged as a means of defence against grazing, and their original biological role is not clear. We show that lysis of Microcystis cells, either mechanically or because of various stress conditions, induced massive accumulation of McyB and enhanced the production of microcystins in the remaining Microcystis cells. A rise in McyB content was also observed following exposure to microcystin or the protease inhibitors micropeptin and microginin, also produced by Microcystis. The extent of the stimulation by cell extract was strongly affected by the age of the treated Microcystis culture. Older cultures, or those recently diluted from stock cultures, hardly responded to the components in the cell extract. We propose that lysis of a fraction of the Microcystis population is sensed by the rest of the cells because of the release of non-ribosomal peptides. The remaining cells respond by raising their ability to produce microcystins thereby enhancing their fitness in their ecological niche, because of their toxicity. [source] Persistence of vibrios in marine bivalves: the role of interactions with haemolymph componentsENVIRONMENTAL MICROBIOLOGY, Issue 6 2005Carla Pruzzo Summary Marine bivalves are widespread in coastal environments and, due to their filter-feeding habit, they can accumulate large numbers of bacteria thus acting as passive carriers of human pathogens. Bivalves possess both humoral and cellular defence mechanisms that operate in a co-ordinated way to kill and eliminate infecting bacteria. Vibrio species are very abundant in coastal waters and are commonly isolated from edible bivalves tissues where they can persist after depuration processes in controlled waters. Such observations indicate that vibrios are regular components of bivalve microflora and that the molluscs can represent an important ecological niche for these bacteria. Here we tried to summarize data on the interactions between vibrios and bivalve haemolymph; the available evidence supports the hypothesis that persistence of bacteria in bivalve tissues depends, at least in part, on their sensitivity to the bactericidal activity of the haemolymph. Results obtained with an in vitro model of Vibrio cholerae challenged against Mytilus galloprovincialis haemocytes indicate that bacterial surface components, soluble haemolymph factors and the signalling pathways of the haemocyte host are involved in determining the result of vibrio,haemolymph interactions. [source] Penguin responses to climate change in the Southern OceanGLOBAL CHANGE BIOLOGY, Issue 7 2009JAUME FORCADA Abstract Penguins are adapted to live in extreme environments, but they can be highly sensitive to climate change, which disrupts penguin life history strategies when it alters the weather, oceanography and critical habitats. For example, in the southwest Atlantic, the distributional range of the ice-obligate emperor and Adélie penguins has shifted poleward and contracted, while the ice-intolerant gentoo and chinstrap penguins have expanded their range southward. In the Southern Ocean, the El Niño-Southern Oscillation and the Southern Annular Mode are the main modes of climate variability that drive changes in the marine ecosystem, ultimately affecting penguins. The interaction between these modes is complex and changes over time, so that penguin responses to climate change are expected to vary accordingly, complicating our understanding of their future population processes. Penguins have long life spans, which slow microevolution, and which is unlikely to increase their tolerance to rapid warming. Therefore, in order that penguins may continue to exploit their transformed ecological niche and maintain their current distributional ranges, they must possess adequate phenotypic plasticity. However, past species-specific adaptations also constrain potential changes in phenology, and are unlikely to be adaptive for altered climatic conditions. Thus, the paleoecological record suggests that penguins are more likely to respond by dispersal rather than adaptation. Ecosystem changes are potentially most important at the borders of current geographic distributions, where penguins operate at the limits of their tolerance; species with low adaptability, particularly the ice-obligates, may therefore be more affected by their need to disperse in response to climate and may struggle to colonize new habitats. While future sea-ice contraction around Antarctica is likely to continue affecting the ice-obligate penguins, understanding the responses of the ice-intolerant penguins also depends on changes in climate mode periodicities and interactions, which to date remain difficult to reproduce in general circulation models. [source] Trait-based ecological risk assessment (TERA): The new frontier?INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT, Issue 1 2008Donald J Baird Traits describe the physical characteristics, ecological niche, and functional role of species within ecosystems, and trait-based approaches are now being introduced into the field of Ecological Risk Assessment (ERA). The costs and benefits arising from the adoption of these approaches in the assessment of risks from toxic substances are described, and the path forward for this new frontier in risk assessment science is presented. In particular, the necessity for more open collaboration and web-based data-sharing to facilitate the development of these exciting new tools is stressed, and the role of scientific organizations such as SETAC as promoters of this ambitious program is highlighted. [source] Morphological specializations of baleen whales associated with hydrodynamic performance and ecological nicheJOURNAL OF MORPHOLOGY, Issue 11 2006Becky L. Woodward Abstract Feeding behavior, prey type, and habitat appear to be associated with the morphological design of body, fluke, and flippers in baleen whales. Morphometric data from whaling records and recent stranding events were compiled, and morphometric parameters describing the body length, and fluke and flipper dimensions for an "average" blue whale Balaenoptera musculus, humpback whale Megaptera novaeangliae, gray whale Eschrichtius robustus, and right whale Eubalaena glacialis were determined. Body mass, body volume, body surface area, and fluke and flipper surface areas were estimated. The resultant morphological configurations lent themselves to the following classifications based on hydrodynamic principles: fast cruiser, slow cruiser, fast maneuverer, and slow maneuverer. Blue whales have highly streamlined bodies with small, high aspect ratio flippers and flukes for fast efficient cruising in the open ocean. On the other hand, the rotund right whale has large, high aspect ratio flukes for efficient slow speed cruising that is optimal for their continuous filter feeding technique. Humpbacks have large, high aspect ratio flippers and a large, low aspect ratio tail for quick acceleration and high-speed maneuvering which would help them catch their elusive prey, while gray whales have large, low aspect ratio flippers and flukes for enhanced low-speed maneuvering in complex coastal water habitats. J. Morphol., 2006. © 2006 Wiley-Liss, Inc. [source] Pseudoplanktonic lifestyle of the Triassic crinoid Traumatocrinus from Southwest ChinaLETHAIA, Issue 3 2006Wang Xiaofeng Colonies of Traumatocrinus (Echinodermata, Crinoidea) attached to driftwood from the lower Upper Triassic (Carnian) Xiaowa Formation of the Guanling area (Guizhou, Southwest China) document a pseudoplanktonic lifestyle for this specialized offshoot of the otherwise benthic Middle Triassic Encrinidae. After the end-Carnian decline of Traumatocrinus, its ecological niche was subsumed in Norian by genera derived from another benthic family (Holocrinidae) with convergent morphological modifications. After the Toarcian (Lower Jurassic), this niche disappeared, possibly due to the emergence of wood-boring bivalves. [source] Survival of inoculated Saccharomyces cerevisiae strain on wine grapes during two vintagesLETTERS IN APPLIED MICROBIOLOGY, Issue 3 2006F. Comitini Abstract Aims:, To investigate the influence of a specific ecological niche, the wine grape, on the survival and development of Saccharomyces cerevisiae. Methods and Results:, A strain with a rare phenotype was sprayed onto the grape surfaces and monitored through two vintages using a specific indicative medium and analysing the internal transcribed spacer regions in the 5·8S rDNA. During the ripening process, there was a progressive colonization of the surface of the undamaged and damaged grapes by epiphytic yeasts, up to the time of harvest. The damaged wine grapes showed a much greater epiphytic yeast population. However, the inoculated S. cerevisiae strain showed a scarce persistence on both undamaged and damaged wine grapes, and the damaged grapes did not appear to improve the grape surface colonization of this strain. Conclusions:, Results indicated that wine grape is not a favourable ecological niche for the development and colonization of S. cerevisiae species. Significance and Impact of the Study:, Results of this work are further evidence that S. cerevisiae is not specifically associated with natural environments such as damaged and undamaged wine grapes. [source] Structural and bioinformatic analysis of the Roman snail Cd-Metallothionein gene uncovers molecular adaptation towards plasticity in coping with multifarious environmental stressMOLECULAR ECOLOGY, Issue 11 2009MARGIT EGG Abstract Metallothioneins (MTs) are a family of multifunctional proteins involved, among others, in stress response. The Cadmium (Cd)-MT gene of the Roman snail (Helix pomatia), for example, encodes for a protein induced upon cadmium exposure. While our previous studies have demonstrated that the expressed Cd-MT isoform of Roman snails assists detoxification of cadmium, the present work focuses on the potential plasticity of this gene in response to a variety of environmental stressors playing a crucial role in the specific ecological niche of H. pomatia. Our hypothesis is based on a bioinformatic approach involving gene sequencing, structural and in silico analysis of transcription factor binding sites (TFBs), and a comparison of these features with other MT genes. Our results show that the Roman snail's Cd-MT gene not only is the largest known MT gene, but also contains , apart from the regulatory promoter region , several intronic repeat cassettes of putative TFBs suggested to be involved in environmental stress response, immune competence, and regulation of gene expression. Moreover, intronic scaffold/matrix attachment regions (S/MARs) and stress-induced duplex destabilization sites confer a high potential for epigenetic gene regulation. This suggested regulatory plasticity is also supported by physiological data showing that Cd-MT in Roman snails can be induced differentially not only after cadmium exposure, but also in response to nonmetallic environmental stressors. It is concluded that structural analysis combined with bioinformatic screening may constitute valuable tools for predicting the potential for plasticity and niche-specific adaptation of stress-responsive genes in populations living under rapidly changing environmental conditions. [source] Case studies and mathematical models of ecological speciation.MOLECULAR ECOLOGY, Issue 14 2007Abstract A recent study of a pair of sympatric species of palms on the Lord Howe Island is viewed as providing probably one of the most convincing examples of sympatric speciation to date. Here we describe and study a stochastic, individual-based, explicit genetic model tailored for this palms system. Overall, our results show that relatively rapid (< 50 000 generations) colonization of a new ecological niche, and sympatric or parapatric speciation via local adaptation and divergence in flowering periods are theoretically plausible if (i) the number of loci controlling the ecological and flowering period traits is small; (ii) the strength of selection for local adaptation is intermediate; and (iii) an acceleration of flowering by a direct environmental effect associated with the new ecological niche is present. We discuss patterns and time-scales of ecological speciation identified by our model, and we highlight important parameters and features that need to be studied empirically in order to provide information that can be used to improve the biological realism and power of mathematical models of ecological speciation. [source] The RprY response regulator of Porphyromonas gingivalisMOLECULAR MICROBIOLOGY, Issue 4 2007Ana E. Duran-Pinedo Summary Porphyromonas gingivalis is a Gram-negative oral anaerobe associated with chronic adult periodontitis. Its ecological niche is the gingival crevice, where the organism adapts to the challenges of the infectious process such as host defence and bacterial products. Bacterial responses to environmental changes are partly regulated by two-component signal transduction systems. Several intact systems were annotated in the genome of P. gingivalis, as well as an orphan regulator encoding a homologue of RprY, a response regulator from Bacteroides fragilis. With the goal of defining the environmental cues that activate RprY in P. gingivalis, we used several strategies to identify its regulon. Results from gene expression and DNA,protein binding assays identified target genes that were either involved in transport functions or associated with oxidative stress, and indicated that RprY can act as an activator and a repressor. RprY positively activated the primary sodium pump, NADH : ubiquinone oxidoreductase (NQR), and RprY protein also interacted with the promoter regions of nqrA genes from B. fragilis and Vibrio cholerae. Given that gingival bleeding and infiltration of host defence cells are symptoms of periodontal infection, iron products released from blood and reactive oxygen species from polymorphonuclear leucocytes may be potential inducers of the RprY regulon. [source] Evolution of signalling in the sporulation phosphorelayMOLECULAR MICROBIOLOGY, Issue 2 2002Keith Stephenson Summary Two-component and phosphorelay signal transduction systems are believed to function as environ-mental sensors that programme gene expression to the composition of the ecological niche in which a microbe normally resides. The question of how evolutionarily related bacteria that occupy different environments change their signal transduction pathways to adapt to such environments was asked of the sporulation phosphorelay of Bacillus subtilis, Bacillus halodurans, Bacillus anthracis and Bacillus stearothermophilus. Comparison of the primary amino acid sequence of phosphorelay proteins with the known structural and interactive properties of the B. subtilis proteins revealed that the amino acid residues of interaction surfaces between phosphorelay proteins and between a phosphorelay protein and DNA resist evolutionary change. The absolute conservation of interaction surfaces allowed the identification of sporulation sensor kinases in B. halodurans, B. anthracis and B. stearothermophilus. In these sensor kinases, the signal-sensing domains are vastly different in size and subdomain composition, with little apparent conservation between species, whereas the catalytic domains of these sensor kinases retain the high level of homology observed for the other phosphorelay proteins. Adaptation to new environments appears to result in rapid evolution of signalling domains to maximize environmental impact while maintaining identical protein,protein and protein,DNA contacts in the entire phosphorelay. In Clostridial genomes, only the Spo0A protein was found, suggesting that the anaerobic relatives of the Bacilli do not use a phosphorelay and phosphorylate Spo0A directly with sensor kinases. [source] Was the Oligo-Miocene Australian metatherian Yalkaparidon a ,mammalian woodpecker'?BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 1 2009ROBIN M. D. BECK One of the most striking examples of convergent evolution within mammals is the suite of anatomical specializations shared by the primate Daubentonia of Madagascar and the marsupial Dactylopsila of Australia and New Guinea. Having last shared a common ancestor over 125 million years ago, these two genera have independently evolved extremely similar adaptations for feeding on xylophagous (wood-boring) insect larvae. These include enlarged incisors to gouge holes in wood, cranial modifications to strengthen the skull against the stresses generated by wood gouging and elongate manual digits that are used as probes to extract the larvae. Elsewhere in the world, the same ecological niche is filled by birds (woodpeckers or morphologically convergent forms) that use their beaks for wood gouging. An extinct group of eutherian mammals, the apatemyids, exhibit very similar craniodental and postcranial adaptations to Daubentonia and Dactylopsila and presumably also occupied the woodpecker niche. A qualitative analysis of characters of the skull and dentition of the enigmatic Oligo-Miocene Australian metatherian Yalkaparidon, specifically its combination of very large, open-rooted incisors, zalambdodont molars and features to strengthen the skull against rostral bending , supports the hypothesis that it is probably a fourth ,mammalian woodpecker'. Discovery of the (as yet unknown) manus of Yalkaparidon will test this hypothesis by revealing whether any of its digits are elongate. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 97, 1,17. [source] Quantifying spatial classification uncertainties of the historical Wisconsin landscape (USA)ECOGRAPHY, Issue 2 2005Janine Bolliger Landscape feature can be classified by creating categories based on aggregation of spatially explicit information. However, many landscape features appear continuous rather than discrete. The aggregation process likely involves loss of information and introduces a variety of uncertainties whose degree and extent may differ spatially. Since landscape classifications have found wide application in e.g. natural resource policies or ecological research, assessments of spatial classification uncertainties are required. We present a quantitative framework to identify the degree of landscape continuity (fuzziness) and structure (categorization) based on fuzzy classification and offer measures to quantify uncertainties originating from aggregating features into categories. Fuzzy classification is a non-hierarchical, quantitative method of assessing class definitions using degrees of association between features and class. This results in classes which are well defined and compositionally distinct, as well as classes which are less clearly defined but which, to various degrees, share characteristics with some or all classes. The spatial variation in the degree of class definition on the landscape is used to assess classification uncertainties. The two aspects of uncertainty investigated are the degree of association of a feature with the overall class definitions (membership diffusion), and the class-specific degree of association of each pixel on the landscape with each class (membership saturation). Three classification scenarios, one fuzzy and one discrete, of the historical landscape of Wisconsin (USA) were compared for spatial classification uncertainties. Membership diffusion is highest in topographically heterogeneous environments, or areas characterized by many species occupying similar ecological niches. Classification uncertainties for individual classes show that differentiated species distributions can be identified, not only distribution centers. [source] Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex methodENVIRONMENTAL MICROBIOLOGY, Issue 10 2008David M. Gordon Summary It is well recognized that Escherichia coli consists of a number of distinct phylo-groups and that strains of the different phylo-groups vary in their ecological niches, life-history characteristics and propensity to cause disease. Consequently, much can be learnt by assigning a strain of E. coli to one of the recognized phylo-groups. A triplex PCR-based method that enables strains of E. coli to be assigned to a phylo-group using a dichotomous key approach based on the presence or absence of two genes (chuA and yjaA) and an anonymous DNA fragment (TSPE4.C2) has been developed. However, the accuracy with which this method assigns strains to their correct phylo-group has not been adequately evaluated. Consequently, 662 strains of E. coli were characterized using a multi-locus sequence typing approach. Unsupervised population assignment algorithms were used to assign strains to phylo-groups based on the multi-locus sequence typing data. The analyses revealed that 85,90% of E. coli strains can be assigned to a phylo-group and that 80,85% of the phylo-group memberships assigned using the Clermont method are correct. However, the accuracy with which strains are assigned to the correct phylo-group depends on their Clermont genotype. For example, strains yielding a Clermont genotype consistent with phylo-groups B1 and B2 are assigned correctly 95% of the time. Strains failing to yield any PCR products using the Clermont method are seldom members of phylo-group A and strains with such a genotype should not be assigned to a phylo-group. [source] Freshwater selenium-methylating bacterial thiopurine methyltransferases: diversity and molecular phylogenyENVIRONMENTAL MICROBIOLOGY, Issue 2 2005S. Favre-Bonté Summary The diversity of bacterial thiopurine methyltransferases (bTPMT) among five natural Se-methylating freshwaters was investigated by polymerase chain reaction (PCR) screenings and sequencings. DNA sequence analyses confirmed the cloned products' identity and revealed a broad diversity of freshwater TPMTs. Neighbour-joining (NJ) phylogenetic analyses combining these sequences, all GenBank entries closely related to these sequences and deduced TPMTs obtained in this work from selected ,-proteobacteria showed TPMTs to form a distinct radiation, closely related to UbiG methyltransferases. Inside the TPMT phylogenetic cluster, eukaryote sequences diverged early from the bacterial ones, and all the bacterial database entries belonged to a subgroup of ,-proteobacteria, with an apparent lateral transfer of a particular allele to ,-proteobacteria of Bordetella. The NJ phylogenetic tree revealed 22 bTPMT lineages, 10 of which harboured freshwater sequences. All lineages showed deep and long branches indicative of major genetic drifts outside regions encoding highly conserved domains. Selected residues among these highly variable domains could reflect adaptations for particular ecological niches. PCR lineage-specific primers differentiated Se-methylating freshwaters according to their ,tpm lineage' signatures. Most freshwater tpm alleles were found to be distinct from those available in the databases, but a group of tpm was found encoding TPMTs identical to an Aeromonas veronii TPMT characterized in this work. [source] TESTING THE ROLE OF INTERSPECIFIC COMPETITION IN THE EVOLUTIONARY ORIGIN OF ELEVATIONAL ZONATION: AN EXAMPLE WITH BUARREMON BRUSH-FINCHES (AVES, EMBERIZIDAE) IN THE NEOTROPICAL MOUNTAINSEVOLUTION, Issue 5 2007Carlos Daniel Cadena Interspecific competition might drive the evolution of ecological niches and result in pairs of formerly competing species segregating along ecological gradients following a process of character displacement. This mechanism has been proposed to account for replacement of related species along gradients of elevation in many areas of the world, but the fundamental issue of whether competition is responsible for the origin of elevational replacements has not been tested. To test hypotheses about the role of interspecific competition in the origin of complementary elevational ranges, I combined molecular phylogenetics, phylogeography, and population genetic analyses on Buarremon torquatus and B. brunneinucha (Aves, Emberizidae), whose patterns of elevational distribution suggest character displacement or ecological release. The hypothesis that elevational distributions in these species changed in opposite directions as a result of competition is untenable because: (1) a historical expansion of the range of B. brunneinucha into areas occupied by B. torquatus was not accompanied by a shift in the elevational range of the former species; (2) when B. brunneinucha colonized the range of B. torquatus, lineages of the latter distributions had already diverged; and (3) historical trends in effective population size do not suggest populations with elevational ranges abutting those of putative competitors have declined as would be expected if competition caused range contractions. However, owing to uncertainty in coalescent estimates of historical population sizes, the hypothesis that some populations of B. torquatus have declined cannot be confidently rejected, which suggests asymmetric character displacement might have occurred. I suggest that the main role of competition in elevational zonation may be to act as a sorting mechanism that allows the coexistence along mountain slopes only of ecologically similar species that differ in elevational distributions prior to attaining sympatry. The contrasting biogeographic histories of B. brunneinucha and B. torquatus illustrate how present-day ecological interactions can have recent origins, and highlights important challenges for testing the hypothesis of character displacement in the absence of data on population history and robust reconstructions of the evolution of traits and geographic ranges. [source] THE EVOLUTION OF GENETIC ARCHITECTURE UNDER FREQUENCY-DEPENDENT DISRUPTIVE SELECTIONEVOLUTION, Issue 8 2006Michael Kopp Abstract We propose a model to analyze a quantitative trait under frequency-dependent disruptive selection. Selection on the trait is a combination of stabilizing selection and intraspecific competition, where competition is maximal between individuals with equal phenotypes. In addition, there is a density-dependent component induced by population regulation. The trait is determined additively by a number of biallelic loci, which can have different effects on the trait value. In contrast to most previous models, we assume that the allelic effects at the loci can evolve due to epistatic interactions with the genetic background. Using a modifier approach, we derive analytical results under the assumption of weak selection and constant population size, and we investigate the full model by numerical simulations. We find that frequency-dependent disruptive selection favors the evolution of a highly asymmetric genetic architecture, where most of the genetic variation is concentrated on a small number of loci. We show that the evolution of genetic architecture can be understood in terms of the ecological niches created by competition. The phenotypic distribution of a population with an adapted genetic architecture closely matches this niche structure. Thus, evolution of the genetic architecture seems to be a plausible way for populations to adapt to regimes of frequency-dependent disruptive selection. As such, it should be seen as a potential evolutionary pathway to discrete polymorphisms and as a potential alternative to other evolutionary responses, such as the evolution of sexual dimorphism or assortative mating. [source] PHYLOGEOGRAPHY AND DEMOGRAPHY OF SYMPATRIC SISTER SURFPERCH SPECIES, EMBIOTOCA JACKSONI AND E. LATERALIS ALONG THE CALIFORNIA COAST: HISTORICAL VERSUS ECOLOGICAL FACTORSEVOLUTION, Issue 2 2005Glacomo Bernardi Abstract With 18 closely related endemic species that radiated in a diversity of ecological niches, the California surfperches (Embiotocidae) species flock is a good candidate for the study of sympatric speciation. Resource partitioninghas been suggested as an important driving force in the radiation of the surfperch family. Within the family, two congeneric sister species, Embiotoca jacksoni and E. lateralis, are known to compete strongly for a preferred singleood resource and may be used as a model of ecological interactions for the family. Along the California coast, the distribution of the two species differs. Embiotoca jacksoni has a continuous range, whereas E. lateralis shows a disjunction with a distribution gap in the Southern California Bight. Two hypotheses may explain this disjunct distribution. Ecological competition may have displaced E. lateralis in favor of E. jacksoni. Alternatively, a common vicariant event may have separated the species into northern and southern populations, followed by secondary contactin E. jacksoni but not in E. lateralis. The two hypotheses predict different phylogeographic and demographic signatures. Using a combined phylogeographic and coalescent approach based on mitochondrial control region data, we show that vicariance can only account for a portion of the observed divergences. Our results are compatible with a significant role played by ecological competition in the southern range of the species. [source] Environmental factors shaping the ecological niches of ammonia-oxidizing archaeaFEMS MICROBIOLOGY REVIEWS, Issue 5 2009Tuba H. Erguder Abstract For more than 100 years it was believed that bacteria were the only group responsible for the oxidation of ammonia. However, recently, a new strain of archaea bearing a putative ammonia monooxygenase subunit A (amoA) gene and able to oxidize ammonia was isolated from a marine aquarium tank. Ammonia-oxidizing archaea (AOA) were subsequently discovered in many ecosystems of varied characteristics and even found as the predominant causal organisms in some environments. Here, we summarize the current knowledge on the environmental conditions related to the presence of AOA and discuss the possible site-related properties. Considering these data, we deduct the possible niches of AOA based on pH, sulfide and phosphate levels. It is proposed that the AOA might be important actors within the nitrogen cycle in low-nutrient, low-pH, and sulfide-containing environments. [source] Assessing the health of European rivers using functional ecological guilds of fish communities: standardising species classification and approaches to metric selectionFISHERIES MANAGEMENT & ECOLOGY, Issue 6 2007R. A. A. NOBLE Abstract, The functional ecological guild approach is the cornerstone for the development of Indices of Biotic Integrity and multi-metric indices to assess the ecological status of aquatic systems. These indices combine metrics (unit-specific measures of a functional component of the fish community known to respond to degradation) into a single measure of ecological assessment. The guild approach provides an operational unit linking individual species characteristics with the community as a whole. Species are grouped into guilds based on some degree of overlap in their ecological niches, regardless of taxonomic relationships. Despite European fish species having been classified into ecological guilds, classification has not been standardised Europe-wide or within the context of classifying species into guilds from which metrics can be developed for ecological assessment purposes. This paper examines the approach used by the EU project FAME to classify European fish species into consistent ecological guilds and to identify suitable metrics as basic tools for the development of a standardised ecological assessment method for European rivers to meet the requirements of the Water Framework Directive. [source] Power law relationships among hierarchical taxonomic categories in algae reveal a new paradox of the planktonGLOBAL ECOLOGY, Issue 5 2006Sophia I. Passy ABSTRACT Aim, In this continental-scale study, the biodiversity of benthic and planktonic algal communities was explored. A recent analysis of extinct and extant tree communities by Enquist et al. (2002) showed that richness of higher taxa was a power function of species richness, invariant across temporal and spatial scales. Here we examined whether the relationships between algal richness at hierarchical taxonomic levels conform to power laws as seen for trees, and if these relationships differ between benthic and planktonic habitats. Location, Streams from more than 50 major watersheds in the United States. Method, A total of 3698 samples were collected from 1277 locations by the National Water-Quality Assessment Program. Three types of stream habitat were sampled: richest targeted habitats, depositional targeted habitats, and phytoplankton. The relationships between taxonomic richness at the species level vs. all higher categories from genus to phylum across the three habitats were examined by ordinary least squares (OLS) regressions after ln-transformation of all variables. The slopes, b, of these regressions represent the exponents of the power functions that scaled the richness of higher taxonomic levels (T) to species richness (S) in the form: T,Sb. Results, Algal richness at hierarchical taxonomic categories (genus to phylum) is a power function of species richness. The scaling exponent of this function, which captures the diversification of higher taxa, i.e. the rate of increase of their richness with the increase of species richness, is significantly different across environments. Main conclusions, The differential algal diversification in the three studied habitats emphasizes the fundamental role of the environment in structuring the communities of simple organisms such as algae. The finding that the diversification of higher taxa is greater in the seemingly homogeneous planktonic environment, when compared to benthic habitats, encompassing an array of ecological niches, poses a new paradox of the plankton. [source] Steps to an ecology of transnational sportsGLOBAL NETWORKS, Issue 2 2007THOMAS HYLLAND ERIKSEN Abstract It is sometimes said that if you are on the team that wins the Irish championship in Gaelic football, you will never have to pay for a pint in your village pub again. However, if you are an outstanding soccer player, you may end up very rich and world famous. Sports are global, transnational or international to varying degrees: Scandinavians are deeply involved in Winter Olympics, which are unknown in most of the world, while many of the New Commonwealth countries participate in international cricket events which must seem global to them, but which are never heard about elsewhere. This essay discusses the factors that lead to the uneven globalization of different sports and the impact of transnational processes on local football, and briefly considers a few sports which have not succeeded (or tried) to become global. The biological concepts of natural selection and ecological niches are used metaphorically to account for the uneven spread, and alternative strategies, of transnational sports. [source] Adaptive radiation into ecological niches with eruptive dynamics: a comparison of tenthredinid and diprionid sawfliesJOURNAL OF ANIMAL ECOLOGY, Issue 3 2005PETER W. PRICE Summary 1We tested the hypothesis that the bottom-up influence of coniferous plant resources promotes the probability of outbreak or eruptive dynamics in sawflies. The literature was examined for three geographical regions , North America north of Mexico, Europe and Japan. 2In each region tenthredinid sawflies (Hymenoptera: Tenthredinidae) were significantly more likely to be eruptive on conifers than on angiosperms. 3The diprionid sawflies (Hymenoptera: Diprionidae) that attack conifers exclusively showed a significantly higher probability of eruptive dynamics than the tenthredinid sawflies on angiosperms in two regions, North America and Europe, and in Japan the trend was in the same direction. 4The probability of species showing eruptive dynamics on coniferous hosts was not significantly different among tenthredinids and diprionids on conifers in North America, Europe and Japan. 5The weight of evidence supports the hypothesis of conifers supporting a higher percentage of eruptive species than angiosperms. 6In the adaptive radiation of tenthredinid sawflies from flowering plants onto conifers, larches (Larix) appear to be particularly favourable for colonization, but pines (Pinus) have not been colonized in any region, a pattern likely to be explained by the growth characteristics of the host plants. 7Among tenthredinid species in Europe, where sawfly/host relationships are best known, there is a significant trend for an increasing proportion of outbreaking species from herbs, to shrubs, to trees. 8The results indicate for the first time the strong bottom-up effects of plant resources on the population dynamics of sawflies, involving general features of host plant taxa and growth characteristics. [source] The inselberg flora of Atlantic Central Africa.JOURNAL OF BIOGEOGRAPHY, Issue 4 2005Abstract Aims, To identify the relative contributions of environmental determinism, dispersal limitation and historical factors in the spatial structure of the floristic data of inselbergs at the local and regional scales, and to test if the extent of species spatial aggregation is related to dispersal abilities. Location, Rain forest inselbergs of Equatorial Guinea, northern Gabon and southern Cameroon (western central Africa). Methods, We use phytosociological relevés and herbarium collections obtained from 27 inselbergs using a stratified sampling scheme considering six plant formations. Data analysis focused on Rubiaceae, Orchidaceae, Melastomataceae, Poaceae, Commelinaceae, Acanthaceae, Begoniaceae and Pteridophytes. Data were investigated using ordination methods (detrended correspondence analysis, DCA; canonical correspondence analysis, CCA), Sørensen's coefficient of similarity and spatial autocorrelation statistics. Comparisons were made at the local and regional scales using ordinations of life-form spectra and ordinations of species data. Results, At the local scale, the forest-inselberg ecotone is the main gradient structuring the floristic data. At the regional scale, this is still the main gradient in the ordination of life-form spectra, but other factors become predominant in analyses of species assemblages. CCA identified three environmental variables explaining a significant part of the variation in floristic data. Spatial autocorrelation analyses showed that both the flora and the environmental factors are spatially autocorrelated: the similarity of species compositions within plant formations decreasing approximately linearly with the logarithm of the spatial distance. The extent of species distribution was correlated with their a priori dispersal abilities as assessed by their diaspore types. Main conclusions, At a local scale, species composition is best explained by a continuous cline of edaphic conditions along the forest-inselberg ecotone, generating a wide array of ecological niches. At a regional scale, these ecological niches are occupied by different species depending on the available local species pool. These subregional species pools probably result from varying environmental conditions, dispersal limitation and the history of past vegetation changes due to climatic fluctuations. [source] Weak phylogenetic effects on ecological niches of Sylvia warblersJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 5 2003K. Böhning-Gaese Abstract To understand the evolution of ecological niches it is important to know whether niche evolution is constrained by phylogeny. We approached this question for Sylvia warblers by testing if closely related species are more similar in 20 ecologically relevant morphological traits than distantly related species. Phylogenetic relatedness was quantified using a molecular phylogeny based on the mitochondrial cytochrome b gene. By Principal Component Analysis (PCA) two major niche axes were extracted. We tested the individual ecomorphological traits and the positions of the species on the PCA axes for phylogenetic effects using Mantel tests. The results demonstrated small but significant phylogenetic effects only for the length of the middle toe, a trait probably correlated with locomotion. In general, however, phylogenetic effects were very weak. This suggests that ecological niches in passerine birds have the potential to evolve rapidly and are not subject to major phylogenetic constraints. [source] The Social Ecology of Marriage and Other Intimate UnionsJOURNAL OF MARRIAGE AND FAMILY, Issue 2 2000Ted L. Huston This article provides an interdisciplinary framework for studying marital and other intimate relationships. Three levels of analysis are distinguished: (a) the society, characterized in terms of both macrosocietal forces and the ecological niches within which particular spouses and couples function; (b) the individual spouses, including their psychosocial and physical attributes, as well as the attitudes and beliefs they have about each other and their relationship; and (c) the marriage relationship, viewed as a behavioral system embedded within a larger network of close relationships. The discussion focuses primarily on the interplay between the spouses and their marriage, emphasizing the importance of distinguishing, both analytically and operationally, the individual from the dyadic (or group) levels of analysis. It is also argued that in order to appreciate how marriages work, social scientists must understand not only how these 2 levels of analysis interpenetrate each other but also how macrosocietal forces and the ecological niches within which couples live impinge on partners and their marital relationship. [source] | |||||||||||||||||||||||||||||||||||||