Home About us Contact
|
Home About us Contact | ||
|
|
||
Diffuse Streaks (diffuse + streak)
Selected AbstractsStructural characterization of YV4O8: simultaneous analysis of coexisting polytypes and simulation of diffuse scattering for a stacking disorder modelACTA CRYSTALLOGRAPHICA SECTION B, Issue 4 2003Mitsuko Onoda The structure of a crystal of newly synthesized YV4O8 was refined on the assumption that two polytypes and their respective twin forms intergrow. The model was expressed as a commensurate composite crystal with two types of subsystem: one is a V4O8 framework with rather large tunnels and the other consists of Y ions. In the tunnels, Y ions and vacancies are located at every second site in an ordered manner that is characteristic of each polytype. Refinement was performed using a high-dimensional formalism and all reflections from all domains. Diffuse streaks observed in the X-ray and electron diffraction patterns were simulated using the matrix method that has been used for one-dimensional disorder such as stacking faults. The unusual diffraction phenomena that occur in a crystal of YV4O8 are explained as arising from a multiple-domain structure of coexisting polytypes. [source] Single-crystal diffuse scattering studies on polymorphs of molecular crystals.ACTA CRYSTALLOGRAPHICA SECTION B, Issue 3 2009The drug benzocaine (ethyl 4-aminobenzoate), commonly used as a local anaesthetic, is a bimorphic solid at room temperature. Form (I) is monoclinic P21/c, while the metastable form (II) is orthorhombic P212121. Three-dimensional diffuse X-ray scattering data have been collected for the two forms on the 11-ID-B beamline at the Advanced Photon Source (APS). Both forms show strong and highly structured diffuse scattering. The data have been interpreted and analysed using Monte Carlo (MC) modelling on the basis that the scattering is purely thermal in origin and indicates the presence of highly correlated molecular motions. In both forms (I) and (II) broad diffuse streaks are observed in the 0kl section which indicate strong longitudinal displacement correlations between molecules in the ,031, directions, extending over distances of up to 50,Å. Streaks extending between Bragg peaks in the hk0 section normal to [100] correspond to correlated motions of chains of molecules extending along a that are linked by N,H...O=C hydrogen bonds and which occur together as coplanar ribbon pairs. The main difference between the two forms is in the dynamical behaviour of the ribbon pairs and in particular how they are able to slide relative to each other. While for form (I) a model involving harmonic springs is able to describe the motion satisfactorily, as simple excursions away from the average structure, there is evidence in form (II) of anharmonic effects that are precursors of a phase transition to a new low-temperature phase, form (III), that was subsequently found. [source] Complex disorder in ,-NH4Fe2(PO4)2: deciphering from a five-dimensional formalismACTA CRYSTALLOGRAPHICA SECTION B, Issue 4 2007Olivier Pérez A new mixed-valent iron ammonium phosphate, ,-NH4Fe2(PO4)2, has been synthesized. The diffuse scattering observed on the diffraction patterns implies complex disorder phenomena and prevents a direct structure resolution. The latter can be solved by generating an artificially ordered orthorhombic structure, using a five-dimensional approach and performing partial integration of the diffuse streaks. In the artificially ordered structure, hexagonal tunnels, delimited by FeO6 octahedra, perpendicular to the directions [011] and [01] can then be seen; they are filled either by [FeP2O10], zigzag ribbons or by NH cations. It is shown that the disordering originates from the shifting of adjacent (100) tunnel slices of the structure with respect to each other along [011], allowing the formation of either new commensurate (superstructure) or incommensurate modulations, or even complete disorder along a. The close relationships with the ordered monoclinic form ,-NH4Fe2(PO4)2 are also explained by this description. [source] Structural phases of hexamethylenetetramine,pimelic acid (1/1): a unified description based on a stacking modelACTA CRYSTALLOGRAPHICA SECTION B, Issue 4 2003Gervais Chapuis The thermotropic phase diagram of 1:1 co-crystals of hexamethylenetetramine and pimelic acid (heptanedioic acid) is investigated. Three crystalline phases are identified at ambient pressure. Phase I is disordered, as revealed by diffuse rods in its diffraction pattern. When the temperature is lowered the diffuse streaks disappear in Phase II, but superstructure reflections emerge indicating an ordering process of the structure through a non-ferroic, or at least non-ferroelastic, phase transition. Phase II is mainly characterized by an unusual distribution of its reflection intensities. Phase III is reached through a ferroelastic phase transition that induces twinned domains. A model based on the stacking of an elementary layer is proposed with the aim of describing the structures in a unified framework. Depending on the value of the unique stacking parameter ,, each of the different structures observed can be reproduced by this model. Its validity is then tested by a series of simulations reproducing the main features of the diffraction patterns such as the diffuse scattering streaks, the occurrence of superstructure peaks at lower temperature and twinning. [source] Phase transition of triclinic hen egg-white lysozyme crystal associated with sodium bindingACTA CRYSTALLOGRAPHICA SECTION D, Issue 4 2004Kazuaki Harata A triclinic crystal of hen egg-white lysozyme obtained from a D2O solution at 313,K was transformed into a new triclinic crystal by slow release of solvent under a temperature-regulated nitrogen-gas stream. The progress of the transition was monitored by X-ray diffraction. The transition started with the appearance of strong diffuse streaks. The diffraction spots gradually fused and faded with the emergence of diffraction from the new lattice; the scattering power of the crystal fell to a resolution of 1.5,Å from the initial 0.9,Å resolution. At the end of the transition, the diffuse streaks disappeared and the scattering power recovered to 1.1,Å resolution. The transformed crystal contained two independent molecules and the solvent content had decreased to 18% from the 32% solvent content of the native crystal. The structure was determined at 1.1,Å resolution and compared with the native structure refined at the same resolution. The backbone structures of the two molecules in the transformed crystal were superimposed on the native structure with root-mean-square deviations of 0.71 and 0.96,Å. A prominent structural difference was observed in the loop region of residues Ser60,Leu75. In the native crystal, a water molecule located at the centre of this helical loop forms hydrogen bonds to main-chain peptide groups. In the transformed crystal, this water molecule is replaced by a sodium ion with octahedral coordination that involves water molecules and a nitrate ion. The peptide group connecting Arg73 and Asn74 is rotated by 180° so that the CO group of Arg73 can coordinate to the sodium ion. The change in the X-ray diffraction pattern during the phase transition suggests that the transition proceeds at the microcrystal level. A mechanism is proposed for the crystal transformation. [source] | ||||||||||