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Diploid
Kinds of Diploid Terms modified by Diploid Selected AbstractsSelection on apomictic lineages of Taraxacum at establishment in a mixed sexual,apomictic populationJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 4 2000De Kovel A species' mode of reproduction, sexual or asexual, will affect its ecology and evolution. In many species, asexuality is related to polyploidy. In Taraxacum, apomicts are triploid, and sexuals are diploid. To disentangle the effects of ploidy level and reproductive mode on life-history traits, we compared established apomictic Taraxacum genotypes with newly synthesized apomictic genotypes, obtained from diploid,triploid crosses. Diploid,triploid crossing is probably the way that most apomictic lineages originate. New genotypes had on average a much lower seed set than established genotypes. Established genotypes differed on average from new genotypes, in particular under shaded conditions: the established genotypes had longer leaves and flowered later. The differences between new and established triploids resembled the differences that have been found between sexual diploids and established apomictic triploids. We conclude that ploidy differences alone are not directly responsible for observed differences between sexual diploid and apomictic triploid dandelions. [source] Variation of Apigenin Quantity in Diploid and Tetraploid Chamomilla recutita (L.) RauschertPLANT BIOLOGY, Issue 4 2000vehlíková Abstract: Apigenin, a pharmacologically important flavonoid of the chamomile plant, was analyzed at two ploidy levels during a three-year period. This flavonoid accumulates in the ligulate florets of the anthodium. Higher percentages of apigenin were found in the ligulate florets of a diploid cultivar, in comparison with tetraploid plants. However, when the total apigenin (mg of compound) in the anthodium was evaluated, tetraploid individuals accumulated significantly more flavonoid. Moreover, in contrast to morphological quantitative characteristics of the anthodium, which varied significantly in different years, apigenin percentage in the ligulate florets was constant and not influenced by environmental conditions. Apigenin content was also found to change during inflorescence ontogeny. It represents the highest percentage of dry mass in young developing florets and anthodia of both cultivars. The total apigenin content of the anthodium, however, increases during flowering, although at later stages apigenin forms only a minor part of ligulate floret and anthodium dry mass. [source] Ethylene insensitivity impedes a subset of responses to phosphorus deficiency in tomato and petuniaPLANT CELL & ENVIRONMENT, Issue 12 2008HYE-JI KIM ABSTRACT The role of ethylene in growth and developmental responses to low phosphorus stress was evaluated using ethylene-insensitive ,Never-ripe' (Nr) tomato and etr1 petunia plants. Low phosphorus increased adventitious root formation in ,Pearson' (wild-type) tomato plants, but not in Nr, supporting a role for ethylene in adventitious root development and showing that ethylene is important for this aspect of phosphorus response. Low phosphorus reduced ethylene production by adventitious roots of both genotypes, suggesting that ethylene perception , not production , regulates carbon allocation to adventitious roots at the expense of other roots under low phosphorus stress. With the exception of its effect on adventitious rooting, Nr had positive effects on growth and biomass accumulation in tomato whereas etr1 tended to have negative effects on petunia. This was particularly evident during the recovery from transplanting, when the effective quantum yield of photosystem II of etr1 petunia grown with low phosphorus was significantly lower than ,Mitchell Diploid', suggesting that etr1 petunia plants may undergo more severe post-transplant stress at low phosphorus availability. Our results demonstrate that ethylene mediates adventitious root formation in response to phosphorus stress and plays an important role for quick recovery of plants exposed to multiple environmental stresses, i.e. transplanting and low phosphorus. [source] Optimizing flow cytometric DNA ploidy and S-phase fraction as independent prognostic markers for node-negative breast cancer specimensCYTOMETRY, Issue 3 2001C.B. Bagwell Abstract Developing a reliable and quantitative assessment of the potential virulence of a malignancy has been a long-standing goal in clinical cytometry. DNA histogram analysis provides valuable information on the cycling activity of a tumor population through S-phase estimates; it also identifies nondiploid populations, a possible indicator of genetic instability and subsequent predisposition to metastasis. Because of conflicting studies in the literature, the clinical relevance of both of these potential prognostic markers has been questioned for the management of breast cancer patients. The purposes of this study are to present a set of 10 adjustments derived from a single large study that optimizes the prognostic strength of both DNA ploidy and S-phase and to test the validity of this approach on two other large multicenter studies. Ten adjustments to both DNA ploidy and S-phase were developed from a single node-negative breast cancer database from Baylor College (n = 961 cases). Seven of the adjustments were used to reclassify histograms into low-risk and high-risk ploidy patterns based on aneuploid fraction and DNA index optimum thresholds resulting in prognostic P values changing from little (P < 0.02) or no significance to P < 0.000005. Other databases from Sweden (n = 210 cases) and France (n = 220 cases) demonstrated similar improvement of DNA ploidy prognostic significance, P < 0.02 to P < 0.0009 and P < 0.12 to P < 0.002, respectively. Three other adjustments were applied to diploid and aneuploid S-phases. These adjustments eliminated a spurious correlation between DNA ploidy and S-phase and enabled them to combine independently into a powerful prognostic model capable of stratifying patients into low, intermediate, and high-risk groups (P < 0.000005). When the Baylor prognostic model was applied to the Sweden and French databases, similar significant patient stratifications were observed (P < 0.0003 and P < 0.00001, respectively). The successful transference of the Baylor prognostic model to other studies suggests that the proposed adjustments may play an important role in standardizing this test and provide valuable prognostic information to those involved in the management of breast cancer patients. Cytometry (Comm. Clin. Cytometry) 46:121,135, 2001. © 2001 Wiley-Liss, Inc. [source] Role of immunocytochemistry and DNA flow cytometry in the fine-needle aspiration diagnosis of malignant small round-cell tumorsDIAGNOSTIC CYTOPATHOLOGY, Issue 4 2001Urmil Brahmi M.Sc. Abstract In the present study, DNA flow cytometry (FCM) and immunocytochemistry (ICC) with a selected panel of antibodies were performed on 51 cases of malignant tumors which were referred for fine-needle aspiration biopsy (FNAB) to our Department of Cytology for the last 2 yr. Twelve cases were diagnosed as neuroblastoma, 16 as Ewing's sarcoma, 2 as retinoblastoma, 5 as non-Hodgkin's lymphoma (NHL), 5 as rhabdomyosarcoma, 2 as peripheral neuroectodermal tumors (PNETs), and 8 as Wilms' tumor. Eleven of 12 neuroblastomas were diploid by FCM, and 1 was aneuploid, with an S-phase fraction (SPF) of 8.3%. Neuron-specific enolase (NSE) was negative in 3 and positive in 8 cases of neuroblastoma, whereas neuroblastoma marker was positive in 3/11. Sixteen of 17 Ewing's sarcomas were diploid, and 1 showed tetraploid aneuploidy, with an SPF of 10.06%. Eight of 13 Ewing's sarcomas were positive for Mic-2 gene product (Ewing's marker). All 5 NHL were positive for leukocyte-common antigen (LCA). Three of 5 rhabdomyosarcomas were diploid, and 2 cases showed aneuploidy. Rhabdomyosarcoma showed muscle-specific actin positivity in 4 and desmin positivity in 3 cases. All 3 cases of PNET were diploid and positive for the Mic-2 gene product, whereas NSE and vimentin were positive in 2 cases. Both cases of retinoblastoma were diploid. Immunostaining was noncontributory in 1 case, and the other showed positivity for the retinoblastoma gene product, NSE, and chromogranin. Seven of 8 Wilms' tumors were diploid, and 1 showed aneuploid, with an SPF of 11.13%. Seven of 8 Wilms' tumors were positive for cytokeratin (CK), 5 were positive for NSE, 6 were positive for epithelial membrane antigen (EMA), and 5 were positive for vimentin. FNAB diagnosis of malignant round-cell tumors is difficult only by light microscopy. Due to the availability of specific markers for subgrouping tumors, ICC has proved to be more useful these days, while DNA FCM has little diagnostic value, as most of them are diploid. Further ancillary studies, e.g., electron microscopy, image analysis, and other molecular investigations, are required to further categorize these tumors more precisely for better clinical management of these cases. Diagn. Cytopathol. 24:233,239, 2001. © 2001 Wiley-Liss, Inc. [source] A new genetic algorithm with diploid chromosomes using probability decoding for adaptation to various environmentsELECTRONICS & COMMUNICATIONS IN JAPAN, Issue 8 2010Manabu Kominami Abstract This paper proposes a new diploid operation technique using probability for function optimization in nonstationary environments and describes a feature of diploid genetic algorithms (GAs). The advantage of the technique over previous diploid GAs is that one genotype is transformed into many phenotypes based on probability. This transformation is not made at random. It has a certain range of probabilities. Each individual has a range. The range allows adaptation to various environments. The technique allows genes to give a probabilistic representation of dominance, and can maintain the diversity of individuals. The experimental results show that the technique can adapt to severe environmental changes where previous diploid GAs cannot adapt. This paper shows that the technique can find optimum solutions with high probability and that the distribution of individuals changes when the environment changes. In addition, by comparing the proposed diploid GA with a haploid GA whose chromosome is twice the length, the features of the diploid are described. © 2010 Wiley Periodicals, Inc. Electron Comm Jpn, 93(8): 38,46, 2010; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/ecj.10097 [source] EVALUATION OF ELEVATED PLOIDY AND ASEXUAL REPRODUCTION AS ALTERNATIVE EXPLANATIONS FOR GEOGRAPHIC PARTHENOGENESIS IN EUCYPRIS VIRENS OSTRACODSEVOLUTION, Issue 4 2010Sofia Adolfsson Transitions from sexual to asexual reproduction are often coupled with elevations in ploidy. As a consequence, the importance of ploidy per se for the maintenance and spread of asexual populations is unclear. To examine the effects of ploidy and asexual reproduction as independent determinants of the success of asexual lineages, we sampled diploid sexual, diploid asexual, and triploid asexual Eucypris virens ostracods across a European wide range. Applying nuclear and mitochondrial markers, we found that E. virens consists of genetically highly differentiated diploid sexual populations, to the extent that these sexual clades could be considered as cryptic species. All sexual populations were found in southern Europe and North Africa and we found that both diploid asexual and triploid asexual lineages have originated multiple times from several sexual lineages. Therefore, the asexual lineages show a wide variety of genetic backgrounds and very strong population genetic structure across the wide geographic range. Finally, we found that triploid, but not diploid, asexual clones dominate habitats in northern Europe. The limited distribution of diploid asexual lineages, despite their shared ancestry with triploid asexual lineages, strongly suggests that the wider geographic distribution of triploids is due to elevated ploidy rather than to asexuality. [source] THE MUTATION MATRIX AND THE EVOLUTION OF EVOLVABILITYEVOLUTION, Issue 4 2007Adam G. Jones Evolvability is a key characteristic of any evolving system, and the concept of evolvability serves as a unifying theme in a wide range of disciplines related to evolutionary theory. The field of quantitative genetics provides a framework for the exploration of evolvability with the promise to produce insights of global importance. With respect to the quantitative genetics of biological systems, the parameters most relevant to evolvability are the G -matrix, which describes the standing additive genetic variances and covariances for a suite of traits, and the M -matrix, which describes the effects of new mutations on genetic variances and covariances. A population's immediate response to selection is governed by the G -matrix. However, evolvability is also concerned with the ability of mutational processes to produce adaptive variants, and consequently the M -matrix is a crucial quantitative genetic parameter. Here, we explore the evolution of evolvability by using analytical theory and simulation-based models to examine the evolution of the mutational correlation, r,, the key parameter determining the nature of genetic constraints imposed by M. The model uses a diploid, sexually reproducing population of finite size experiencing stabilizing selection on a two-trait phenotype. We assume that the mutational correlation is a third quantitative trait determined by multiple additive loci. An individual's value of the mutational correlation trait determines the correlation between pleiotropic effects of new alleles when they arise in that individual. Our results show that the mutational correlation, despite the fact that it is not involved directly in the specification of an individual's fitness, does evolve in response to selection on the bivariate phenotype. The mutational variance exhibits a weak tendency to evolve to produce alignment of the M -matrix with the adaptive landscape, but is prone to erratic fluctuations as a consequence of genetic drift. The interpretation of this result is that the evolvability of the population is capable of a response to selection, and whether this response results in an increase or decrease in evolvability depends on the way in which the bivariate phenotypic optimum is expected to move. Interestingly, both analytical and simulation results show that the mutational correlation experiences disruptive selection, with local fitness maxima at ,1 and +1. Genetic drift counteracts the tendency for the mutational correlation to persist at these extreme values, however. Our results also show that an evolving M -matrix tends to increase stability of the G -matrix under most circumstances. Previous studies of G -matrix stability, which assume nonevolving M -matrices, consequently may overestimate the level of instability of G relative to what might be expected in natural systems. Overall, our results indicate that evolvability can evolve in natural systems in a way that tends to result in alignment of the G -matrix, the M -matrix, and the adaptive landscape, and that such evolution tends to stabilize the G -matrix over evolutionary time. [source] ECOLOGICAL DIFFERENTIATION AND DIPLOID SUPERIORITY ACROSS A MOVING PLOIDY CONTACT ZONEEVOLUTION, Issue 1 2007Richard J. A. Buggs Plant polyploid complexes provide useful model systems for distinguishing between adaptive and nonadaptive causes of parapatric distributions in closely related lineages. Polyploidy often gives rise to morphological and physiological changes, which may be adaptive to different environments, but separate distributions may also be maintained by reproductive interference caused by postzygotic reproductive isolation. Here, we test the hypothesis that diploid and descendent polyploid races of the wind-pollinated herb Mercurialis annua, which are found in parapatry over an environmental gradient in northeast Spain, are differentiated in their ecophysiology and life history. We also ask whether any such differences represent adaptations to their different natural environments. On the basis of a series of reciprocal transplant experiments in the field, and experiments under controlled conditions, we found that diploid and polyploid populations of M. annua are ecologically differentiated, but that they do not show local adaptation; rather, the diploids have higher fitness than the polyploids across both diploid- and polyploid-occupied regions. In fact, diploids are currently displacing polyploids by advancing south on two separate fronts in Spain, and previous work has shown that this displacement is being driven to a large extent by asymmetrical pollen swamping. Our results here suggest that ecophysiological superiority of the diploids may also be contributing to their expansion. [source] THE EFFECT OF SELF-FERTILIZATION, INBREEDING DEPRESSION, AND POPULATION SIZE ON AUTOPOLYPLOID ESTABLISHMENEVOLUTION, Issue 9 2005Joseph H. Rausch Abstract The minority cytotype exclusion principle describes how random mating between diploid and autotetraploid cytotypes hinders establishment of the rare cytotype. We present deterministic and stochastic models to ascertain how selfing, inbreeding depression, unreduced gamete production, and finite population size affect minority cytotype exclusion and the establishment of autotetraploids. Results demonstrate that higher selfing rates and lower inbreeding depression in autotetraploids facilitate establishment of autotetraploid populations. Stochastic effects due to finite population size increase the probability of polyploid establishment and decrease the mean time to tetraploid fixation. Our results extend the minority cytotype exclusion principle to include important features of plant reproduction and demonstrate that variation in mating system parameters significantly influences the conditions necessary for polyploid establishment. [source] SEXUAL CONFLICT AND PROTEIN POLYMORPHISMEVOLUTION, Issue 7 2004Ralph Haygood Abstract Sexual conflict, where male and female reproductive interests differ, is probably widespread and often mediated by male or sperm proteins and female or egg proteins that bind to each other during mating or fertilization. One potential consequence is maintenance of polymorphism in these proteins, which might result in reproductive isolation between sympatric subpopulations. I investigate the conditions for polymorphism maintenance in a series of mathematical models of sexual conflict over mating or fertilization frequency. The models represent a male or sperm ligand and a female or egg receptor, and they differ in whether expression of either protein is haploid or diploid. For diploid expression, the conditions imply that patterns of dominance, which involve neither overdominance nor un-derdominance, can determine whether polymorphism is maintained. For example, suppose ligand expression is diploid, and consider ligand alleles L1 and L2 in interactions with a given receptor genotype; if L1/L1 males are fitter than L2/L2 males in these interactions, then polymorphism is more likely to be maintained when L1/L2 males more closely resemble L1/L1 males in these interactions. Such fitter-allele dominance might be typical of a ligand or its receptor due to their biochemistry, in which case polymorphism might be typical of the pair. [source] MODULARITY OF THE ANGIOSPERM FEMALE GAMETOPHYTE AND ITS BEARING ON THE EARLY EVOLUTION OF ENDOSPERM IN FLOWERING PLANTSEVOLUTION, Issue 2 2003William E. Friedman Abstract The monosporic seven-celled/eight-nucleate Polygonumtype female gametophyte has long served as a focal point for discussion of the origin and subsequent evolution of the angiosperm female gametophyte. In Polygonumtype female gametophytes, two haploid female nuclei are incorporated into the central cell, and fusion of a sperm cell with the binucleate central cell produces a triploid endosperm with a complement of two maternal and one paternal genomes, characteristic of most angiosperms. We document the development of a four-celled/four-nucleate female gametophyte in Nuphar polysepala (Engelm.) and infer its presence in many other ancient lineages of angiosperms. The central cell of the female gametophyte in these taxa contains only one haploid nucleus; thus endosperm is diploid and has a ratio of one maternal to one paternal genome. Based on comparisons among flowering plants, we conclude that the angiosperm female gametophyte is constructed of modular developmental subunits. Each module is characterized by a common developmental pattern: (1) positioning of a single nucleus within a cytoplasmic domain (pole) of the female gametophyte; (2) two free-nuclear mitoses to yield four nuclei within that domain; and (3) partitioning of three uninucleate cells adjacent to the pole such that the fourth nucleus is confined to the central region of the female gametophyte (central cell). Within the basal angiosperm lineages Nymphaeales and Illiciales, female gametophytes are characterized by a single developmental module that produces a four-celled/four-nucleate structure with a haploid uninucleate central cell. A second pattern, typical of Amborella and the overwhelming majority of eumagnoliids, monocots, and eudicots, involves the early establishment of two developmental modules that produce a seven-celled/eight-nucleate female gametophyte with two haploid nuclei in the central cell. Comparative analysis of onto-genetic sequences suggests that the seven-celled female gametophyte (two modules) evolved by duplication and ectopic expression of an ancestral Nuphar- like developmental module within the chalazal domain of the female gametophyte. These analyses indicate that the first angiosperm female gametophytes were composed of a single developmental module, which upon double fertilization yielded a diploid endosperm. Early in angiosperm history this basic module was duplicated, and resulted in a seven-celled/eight-nucleate female gametophyte, which yielded a triploid endosperm with the characteristic 2:1 maternal to paternal genome ratio. [source] Comparative development of fiber in wild and cultivated cottonEVOLUTION AND DEVELOPMENT, Issue 1 2001Wendy L. Applequist SUMMARY One of the most striking examples of plant hairs is the single-celled epidermal seed trichome of cultivated cotton. The developmental morphology of these commercial "fibers" has been well-characterized in Gossypium hirsutum, but little is known about the pattern and tempo of fiber development in wild Gossypium species, all of which have short, agronomically inferior fiber. To identify developmental differences that account for variation in fiber length, and to place these differences in a phylogenetic context, we conducted SEM studies of ovules at and near the time of flowering, and generated growth curves for cultivated and wild diploid and tetraploid species. Trichome initiation was found to be similar in all taxa, with few notable differences in trichome density or early growth. Developmental profiles of the fibers of most wild species are similar, with fiber elongation terminating at about two weeks post-anthesis. In contrast, growth is extended to three weeks in the A- and F-genome diploids. This prolonged elongation period is diagnosed as a key evolutionary event in the origin of long fiber. A second evolutionary innovation is that absolute growth rate is higher in species with long fibers. Domestication of species is associated with a further prolongation of elongation at both the diploid and allopolyploid levels, suggesting the effects of parallel artificial selection. Comparative analysis of fiber growth curves lends developmental support to previous quantitative genetic suggestions that genes for fiber "improvement" in tetraploid cotton were contributed by the agronomically inferior D-genome diploid parent. [source] The identity of Paeonia corsica Sieber ex Tausch (Paeoniaceae), with special reference to its relationship with P. mascula (L.) Mill.FEDDES REPERTORIUM, Issue 1-2 2006Hong De-Yuan The taxonomy of the genus Paeonia in central Mediterranean islands has been controversial, with number of recognized taxa changing greatly from one species without infraspecific division to three species or five infraspecific taxa in one species, and with the number of synonyms as great as 30. In the present work, the taxonomic history is thoroughly reviewed and a taxonomic revision is made based on extensive field work, chromosome observation, population sampling, examination of a large amount of herbarium specimens, and subsequent statistic analysis. As a result of the studies P. corsica Sieber ex Tausch, an ignored specific name, is restored at specific rank, and the species is found distinct from all the three subspecies of P. mascula in this region in having mostly nine (vs , 10) leaflets/segments, shorter hairs (1.5 mm vs 3 mm long) on carpels, rather densely holosericeous (vs glabrous or very sparsely hirsute) on the lower surface of leaves. It is a diploid, confined to Corsica France), Sardinia (Italy), Ionian Islands and Akarnania Province of Greece, whereas P. mascula is a tetraploid, widely distributed from Spain to Turkey and Iraq, but not in Corsica, Sardinia and W Greece. In addition, type specimens of four taxa are designated, and 29 botanic names are listed as synonyms of P. corsica in this paper. (© 2006 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) Die Identität von Paeonia corsica Sieber ex Tausch (Paeoniaceae), mit besonderem Bezug auf ihre Verwandtschaft mit P. mascula (L.) Mill. Die Taxonomie der Gattung Paeonia auf den zentralen Mittelmeerinseln ist stets kontrovers gewesen. Die Anzahl der Taxa wechselte zwischen einer Art ohne infraspezifische Differenzierung bis zu drei oder fünf infraspezifische Taxa innerhalb einer Art. Die Anzahl der Synonyme beträgt bis zu 30 Taxa. In vorliegender Arbeit wird die Geschichte der Taxonomie sorgfältig betrachtet und eine taxonomische Revision auf der Basis extensiver Feldstudien, Chromosomen-Bewertung, Sammlungen von Populationen, der Untersuchung zahlreicher Herbarproben und abschließender statistischer Analysen vorgenommen. Im Ergebnis dieser Untersuchungen wird Paeonia corsica Sieber ex Tausch, ein bislang unbeachteter Artname, erneut in den Rang einer Art erhoben. Diese in dieser Region gefundene Spezies wurde als verschieden von den drei Unterarten von Paeonia mascula befunden. Sie hat meist neun (, 10) Blättchen, kürzere Haare (1.5 mm vs 3 mm lang) auf dem Karpell dichtere holoserios (vs glabrous oder selten hirsut) auf der Blattunterseite. Paeoniacorsica ist diploid auf Korsika (Frankreich), Sardinien (Italien), den Ionischen Inseln und der Provinz Akarnania in Griechenland, während Paeonia mascula tetraploid ist und weit verbreitet von Spanien bis in die Türkei und den Irak, fehlt aber auf Korsika, Sardinien und in Westgriechenland. Außerdem werden Typspecimen für 4 Taxa festgelegt. Als Synonyme von P. corsica wurden 29 Namen aufgelistet. [source] Near-diploid and near-triploid human sporadic colorectal adenocarcinomas differ for KRAS2 and TP53 mutational statusGENES, CHROMOSOMES AND CANCER, Issue 2 2003Walter Giaretti Mutations of the KRAS2 protoncogene and inactivation of the TP53 oncosuppressor gene have been suggested to contribute to chromosomal instability (CIN) and aneuploidy in colorectal cancer (CRC). Previous work has also shown that the degree of DNA ploidy [DNA index (DI)], as obtained by flow cytometry in CRC, is non-randomly distributed and, in particular, that DI near-diploid and near-triploid values are well separated by a low-probability valley region. At present, it is not known whether a relationship exists between DI and the mutational status of KRAS2 and TP53. Multiple samples obtained from 35 human sporadic CRCs have been used to provide nuclei suspensions for flow cytometric analysis and sorting of specific DI subpopulations. Sorted nuclei were then used to analyze the high-microsatellite-instability (MSI-H) phenotype and the mutation spectrum of the KRAS2 and TP53 genes. A single MSI-H case was detected. There were 6 DNA diploid (DI = 1) and 29 aneuploid (DI , 1) CRCs, with the DI aneuploid cases non-randomly subdivided in 9 near-diploid (DI , 1 and DI , 1.4), 8 near-triploid (1.4 < DI < 1.6), and 12 high-aneuploid (DI , 1.6) cases. Proximal CRCs were more often DNA diploid and near-diploid than distal ones, and Dukes' C cases were more commonly high-aneuploid than Dukes' B. Moreover, the incidence of mutations of the KRAS2 and TP53 genes was lowest among the DNA near-triploid subpopulations and highest among the near-diploid ones. We suggest that DNA near-diploid and near-triploid subpopulations in human sporadic CRC reflect different genetic mechanisms of CIN and have a potentially different clinical behavior. © 2003 Wiley-Liss, Inc. [source] The relationship between tiller appearance in spring and contribution to dry-matter yield in perennial ryegrass (Lolium perenne L.) cultivars differing in heading dateGRASS & FORAGE SCIENCE, Issue 2 2005A. S. Laidlaw Abstract The relative contribution of tillers present in April and those appearing in consecutive periods in spring was assessed for perennial ryegrass cultivars in the three maturity groups (early, intermediate- and late-heading). Each group was represented by two diploid and one tetraploid cultivar each in plots in their third (2000) and fourth (2001) harvest years in three replicated blocks receiving an average of 325 kg N ha,1 and cut seven (in 2001) or eight (in 2000) times annually. ,Main' tillers and their daughters were marked with colour-coded PVC-covered wire loops in early April as were daughters which appeared in consecutive periods between harvests, the loop colour identifying the period of origin of the tiller. Tillers were harvested at cutting height (5 cm) before the plots were harvested and the herbage from tillers with the same colour code bulked per plot. Tillers were identified retrospectively as ,reproductive' if they had been decapitated at the previous harvest. Dry-matter yield was higher in the early than late-heading cultivars in April and early May but this was reversed in harvests in late May and June. The early heading group had a lower lamina content than the late-heading group during reproduction growth, both due to the reproductive tillers (mainly those which overwintered) having a lower leaf content and to their being fewer and smaller vegetative tillers during the reproductive phase than for the late-heading group. Turnover of tillers was high in spring due to decapitation of reproductive tillers and rapid post-flowering tillering. This was particularly pronounced in the early heading group which also had slightly more tillers marked in April which were subsequently decapitated than in the other maturity groups, i.e. 0·56 compared with 0·44 for the late-maturing group. Mean ratios of rate of death: rate of tillering for 3 years (1999,2001) for the early and late-heading groups were 0·8 and 0·4, respectively, for April,May and 1·1 and 2·4, respectively, for June indicating the different patterns in tiller turnover for the two extreme maturity groups. Information on tiller origin and contribution to yield can be used to refine tiller-based grass growth models. [source] The effect of sward structure as influenced by ryegrass genotype on bite dimensions and short-term intake rate by dairy cowsGRASS & FORAGE SCIENCE, Issue 1 2003P. D. Barrett Abstract The effects of genotypic variation in ryegrasses on sward structure, bite dimensions and intake rate by dairy cows were investigated. Two experiments were conducted. In Experiment 1, swards were in a vegetative state whereas, in Experiment 2, they were partly reproductive and were taller with higher herbage mass but lower leaf proportion than in Experiment 1. Applicability of relationships between sward structure and bite characteristics, previously established from artificial or hand-constructed swards, to field conditions were tested. Additional short-term intake rates and/or sward structural characteristics were considered as indicators of potential intake for use in protocols for the evaluation of grass varieties. Four cultivars were studied: AberElan, Twins (diploid and tetraploid perennial ryegrasses respectively), Polly, a hybrid ryegrass (perennial × Italian ryegrass) and Multimo (Italian ryegrass), each established in 200-m2 plots in four replicated blocks. Herbage intake rate was determined by short-term liveweight change (taking account of insensible weight loss) using 16 dairy cows allocated to four balanced groups with each plot grazed by one group for a 1-h assessment period. One block was grazed per day, over a 4-d experimental period, with each group grazing each variety in a complete crossover design. Sward characteristics and bite rate were also measured in both experiments. Bite dimensions were subsequently estimated, with bite depth being determined as a function of extended tiller height (ETH) in both experiments. Within both experiments, bite mass and intake rate did not differ significantly between swards of different cultivars despite swards containing Multimo generally having a higher ETH and water-soluble carbohydrate concentration and lower green leaf mass, sward bulk density and neutral-detergent fibre concentration than the other swards. However, bite depth was significantly higher (P < 0·01) in swards containing Multimo swards than in the others and, in Experiment 1, bite depth, as a proportion of ETH, was higher in swards containing Multimo and lower in those containing Twins than in the other two cultivars, whereas there was no difference in Experiment 2. Taking both experiments together, the mean bite depth was 0·5 of ETH with sward bulk density accounting for almost half the variance in the relationship between bite depth and ETH. The bulk density of the bite (bite mass per unit bite volume), measured in Experiment 2, followed a similar pattern to sward bulk density, increasing in the order Multimo, Polly, AberElan and Twins. It is concluded that the relationships between sward characteristics and bite dimensions, derived from artificial swards, are applicable to field swards, although the range in natural ryegrass sward characteristics is usually not as wide as in experiments using artificial swards. Lack of precision in the measurement of short-term intake and in sward-based measurements is likely to preclude their use in the evaluation of grass varieties. [source] Responses of shoot growth and survival to water stress gradient in diploid and tetraploid populations of Lolium multiflorum and L. perenneGRASSLAND SCIENCE, Issue 4 2006Shu-ichi Sugiyama Abstract Drought stress is one of the critical environmental factors in determining growth and survival of herbage grasses. In this study, by using a hydroponic culture system including different amounts of polyethylene glycol (PEG), responses of plant shoots to water stress in four different intensities (0 Mpa, ,0.6 Mpa, ,1.2 Mpa and ,1.8 Mpa) were examined in diploid and tetraploid cultivars of Italian ryegrass (Lolium multiflorum) and perennial ryegrass (L. perenne). Since freezing injury is caused by cell dehydration, freezing tolerance was also examined for six subzero temperatures (,11, ,12, ,14, ,16, ,18 and ,20°C) in both species. L. multiflorum had a larger shoot biomass at all stress intensities and a lower survival rate under severe water stress and freezing stress conditions than L. perenne. Thus, there was a trade-off (negative correlation) between potential growth under a stress-free condition and survival under a severe stress condition in diploid and tetraploid cultivars of both species. This trade-off was mediated by tissue water content. High water content led to a high growth rate through increasing specific leaf area, while low water content resulted in a high tissue osmotic potential that could confer high cell dehydration tolerance. [source] Genome-wide analysis of genetic changes in intestinal-type sinonasal adenocarcinomaHEAD & NECK: JOURNAL FOR THE SCIENCES & SPECIALTIES OF THE HEAD AND NECK, Issue 3 2009Mario A. Hermsen PhD Abstract Background Intestinal-type sinonasal adenocarcinomas are rare tumors related to professional exposure to wood dust. Little is known about the genetic changes in these tumors. Methods Twenty-two tumors were analyzed by microarray comparative genomic hybridization (CGH). In addition, DNA ploidy was measured by flow cytometry and microsatellite instability (MSI) by multiplex PCR. Results The most frequent gains were, in descending order, as follows: 5p15, 20q13, and 8q24. Losses occurred most frequently at 4q31-qter, 18q12-22, 8p12-pter, and 5q11-qter. MSI was not detected. Seven cases that harbored very few changes were mostly DNA diploid and had more favorable clinicopathological features, such as lack of intracranial invasion, less metastases, and longer overall survival. Conclusion The microarray CGH results enabled to better define hotspots of chromosomal gains and losses for further investigation of genes involved in the tumorigenesis of sinonasal adenocarcinoma. In addition, the data allowed classification of a group of patients with better clinical outcome. © 2008 Wiley Periodicals, Inc. Head Neck, 2009 [source] Lipomatous hemangiopericytoma of the head and neck: immunohistochemical and dna ploidy analysesHEAD & NECK: JOURNAL FOR THE SCIENCES & SPECIALTIES OF THE HEAD AND NECK, Issue 6 2004Sadir J. Alrawi MD Abstract Background. Lipomatous hemangiopericytoma (LHPC) is a newly described rare soft tissue tumor with unpredictable biologic behavior and is difficult to diagnose by conventional histologic parameters. The molecular analyses of this entity to date are sparse. Only a few cases of LHPC have been reported. Although one case of LHPC in the sinonasal region was briefly reported, this is the first case in the head and neck region with detailed clinicopathologic features and molecular analysis of this entity. Methods. We reported a case of LHPC in a 55-year-old woman with a slowly growing lesion in the occipital area that was diagnosed by CT and MRI and removed surgically. Immunohistochemical and DNA ploidy analyses were performed. Results. A panel of 16 markers was included for immunohistochemical analysis. Diffuse immunopositivity of CD57 in our case provides supportive evidence that LHPC is linked with HPC because this marker is also present in approximately 50% of conventional HPCs. CD57 should be used in the immunohistochemical panel in any lesion suspected to be LHPC. Furthermore, CD57 along with CD34 and XIIIa is thought to stain for primitive mesenchymal stem cells, suggesting a bimodal/multimodal differentiation of LHPC. By flow cytometry, we found that tumor cells were 100% diploid with the S-phase fraction (SPF) being 3.21%. A significant positive correlation was detected between nuclear proliferating index and SPF (p < 0.001, by Spearman analysis). These findings provide molecular evidence indicating a benign nature of LHPC. Conclusions. Contrary to the old belief that HPC has an aggressive nature, this variant of tumor looks less aggressive. The patient was followed for 1 year without any evidence of recurrence, supporting our pathologic hypothesis. © 2004 Wiley Periodicals, Inc. Head Neck26: 544,549, 2004 [source] Reproductive modes and genetic polymorphism in the tardigrade Richtersius coronifer (Eutardigrada, Macrobiotidae)INVERTEBRATE BIOLOGY, Issue 1 2003Lorena Rebecchi Abstract. Allozymes were assessed by starch gel electrophoresis in 3 populations of a eutardigrade, Richtersius coronifer, with different reproductive modes. One population from Italy (with 2 sub-populations) was amphimictic and 2 populations (1 from Italy and 1 from Sweden) were parthenogenetic. All populations, irrespective of their reproductive mode, were diploid with the same chromosome number (2n=12) and had bivalents in the oocytes. Of the 14 loci analyzed, only 3 were polymorphic. The amphimictic population had a higher degree of genetic variability (mean heterozygosity >0.25) than the parthenogenetic populations (mean heterozygosity of the 2 populations <0.01). In all female populations, allele frequencies at all 3 loci deviated from Hardy-Weinberg equilibria due to heterozygote deficiency. These results support a hypothesis of automictic parthenogenesis in R. coronifer. [source] Elevated genetic heterogeneity and Pleistocene climatic instability: inferences from nrDNA in New Zealand Coprosma (Rubiaceae)JOURNAL OF BIOGEOGRAPHY, Issue 7 2002Stephen R. Wichman Aim To examine patterns of hybridization and genotype mixing within the genus Coprosma J.R.Forst. & G.Forst. (Rubiaceae). Location New Zealand Methods Nucleotide sequence was determined for the internal transcribed spacer (ITS) and external transcribed spacer (ETS) regions of nuclear ribosomal DNA for fifty individuals from thirty-six taxa within the New Zealand component of the genus Coprosma. Results Mixed sequences were found to be widespread in Coprosma. Direct sequencing of ITS polymerase chain reaction (PCR) products from seven polyploid taxa showed evidence of sequence mixtures. Cloning and sequencing of individual PCR products from two polyploids confirmed the presence of multiple templates, one of which corresponded to that of a diploid. Intra-individual heterogeneity was also seen in a hybrid diploid taxon, with the mixed nucleotides corresponding to those of the parental lineages. Finally the ITS sequences of twenty-two diploid taxa showed that eleven contained intra-individual heterogeneity. Conclusions We conclude that the widespread occurrence of sequence mixtures in Coprosma results from of frequent hybridization. We also conclude that concerted evolution of the ITS and ETS regions is depressed. We propose that these characteristics evolved as a mechanism to maintain high levels of heterogeneity and suggest that this is adaptive for Coprosma in climatically unstable and physically complex New Zealand landscapes. These landscapes have been subjected to repeated oscillations between stadial and interstadial environments during the Pleistocene. [source] Population dynamics and stage structure in a haploid-diploid red seaweed, Gracilaria gracilisJOURNAL OF ECOLOGY, Issue 3 2001Carolyn Engel Summary 1,Many red seaweeds are characterized by a haploid-diploid life cycle in which populations consist of dioecious haploid (gametophyte) and diploid (tetrasporophyte) individuals as well as an additional diploid zygote-derived sporangium (carposporophyte) stage. A demographic analysis of Gracilaria gracilis populations was carried out to explore and evaluate the population dynamics and stage structure of a typical haploid-diploid red seaweed. 2,Four G. gracilis populations were studied at two sites on the French coast of the Strait of Dover. Survival, reproduction and recruitment rates were measured in each population for up to 4 years. Eight two-sex stage-based population projection matrices were built to describe their demography. 3,All four populations were characterized by high survival and low recruitment rates. Population growth rates (,) were similar between populations and between years and ranged from 1.03 to 1.17. In addition, generation times were found to be as long as 42 years. 4,Sex and ploidy ratios were variable across populations and over time. Female frequencies ranged from 0.31 to 0.59 and tetrasporophyte frequencies from 0.44 to 0.63. However, in most cases, the observed population structures were not significantly different from the calculated stage distributions. 5,Eigenvalue elasticity analysis showed that , was most sensitive to changes in matrix transitions that corresponded to survival of the gametophyte and tetrasporophyte stages. In contrast, the contribution of the fertility elements to , was small. Eigenvector elasticity analysis also showed that survival elements had the greatest impact on sex and ploidy ratios. [source] Selection on apomictic lineages of Taraxacum at establishment in a mixed sexual,apomictic populationJOURNAL OF EVOLUTIONARY BIOLOGY, Issue 4 2000De Kovel A species' mode of reproduction, sexual or asexual, will affect its ecology and evolution. In many species, asexuality is related to polyploidy. In Taraxacum, apomicts are triploid, and sexuals are diploid. To disentangle the effects of ploidy level and reproductive mode on life-history traits, we compared established apomictic Taraxacum genotypes with newly synthesized apomictic genotypes, obtained from diploid,triploid crosses. Diploid,triploid crossing is probably the way that most apomictic lineages originate. New genotypes had on average a much lower seed set than established genotypes. Established genotypes differed on average from new genotypes, in particular under shaded conditions: the established genotypes had longer leaves and flowered later. The differences between new and established triploids resembled the differences that have been found between sexual diploids and established apomictic triploids. We conclude that ploidy differences alone are not directly responsible for observed differences between sexual diploid and apomictic triploid dandelions. [source] Variability in diet and foraging behaviour between sexes and ploidy forms of the hybridogenetic Squalius alburnoides complex (Cyprinidae) in the Guadiana River basin, PortugalJOURNAL OF FISH BIOLOGY, Issue 2 2005A. Gomes-Ferreira Samples of the Squalius alburnoides complex, a hybridogenetic Iberian minnow composed of diploid, triploid and, less commonly, tetraploid forms, were collected from a tributary of the Ardila River (Guadiana River basin) between February 1999 and January 2001. Seasonal variation in diet was evident, and was probably linked to prey availability. Distinct foraging behaviours between ploidy forms were found towards several prey items, suggesting that diploid adult males fed mostly near the surface, whereas diploid adult females tended to feed near the bottom and submerged vegetation. Triploid females exhibited an intermediate foraging behaviour, although there was greater affinity towards diploid male feeding behaviour. Diploid males which, in contrast to diploid and triploid females, have non-hybrid genomes in the Guadiana drainage, exhibited a higher specialization for food. Despite considerable dietary overlap, there appeared to be spatial segregation of feeding niches between the three forms, especially during dry periods when prey availability was lower, which may be a strategy for diminishing competition for food. Therefore, considering asexual generalist and specialist hypotheses, it appears that the different ploidy levels are generalist, opportunistic feeders that partition the resources when limited. [source] Variations of 18S rDNA Loci Among Six Populations of Paeonia obovata Maxim. (Paeoniaceae) Revealed by Fluorescence In Situ HybridizationJOURNAL OF INTEGRATIVE PLANT BIOLOGY, Issue 5 2006Rui Luo Abstract The localization of 18S ribosomal RNA genes (rDNA) by fluorescence in situ hybridization (FISH) had been performed for some species of Paeonia. However, the pattern of 18S rDNA loci among populations is indistinct. In the present study, we localized 18S rDNA loci on meiotic or mitotic chromosomes of six populations of Paeonia obovata Maxim. (Paeoniaceae). Different numbers of rDNA loci were found with different diploid (2n=10) populations, namely eight (Lushi and Mt. Jiuhua populations), 10 (Mt. Taibai population), and seven (Mt. Guandi population), whereas tetraploid (2n=20) populations were all found with 16 loci. All rDNA loci were mapped near telomeres of mitotic chromosomes and there was no chromosome with two loci. The present results show that molecular cytological polymorphism exists among P. obovata diploid populations, indicating that structural variations occurred frequently during the evolutionary history of this species, accompanied with differentiation among populations. (Managing editor: Wei Wang) [source] Karyotype analysis and polyploidy in Palaua and a comparison with its sister group Fuertesimalva (Malvaceae)JOURNAL OF SYSTEMATICS EVOLUTION, Issue 3 2010Julio V SCHNEIDER Abstract,Palaua (Malveae, Malvaceae) comprises 15 species endemic to the hyperarid coastal desert of Chile and Peru. So far, chromosome counts have been known for two diploid species (2n= 2x= 10) only. Here we report new chromosome numbers for 12 species of Palaua and four of its sister group Fuertesimalva. Karyotypes including 4,,6,-diamidino-2-phenylindole dihydrochloride (DAPI)/chromomycin (CMA3) fluorescent banding are presented for selected species representative of each of the main clades of Palaua. An important finding is the discovery of polyploids in one exclusively tetraploid species (P. trisepala) and four species with mixed diploid and tetraploid cytotypes (P. dissecta, P. mollendoensis, P. moschata, and P. tomentosa). The diploid and tetraploid karyotypes are all unimodal, symmetrical and show one or two pairs of satellite chromosomes with their associated CMA+/DAPI, band depending on the cytotype. For some of the tetraploids an autopolyploid origin is suggested. [source] Karyotype and cytogeography of the genus Heracleum (Apiaceae) in the Hengduan MountainsJOURNAL OF SYSTEMATICS EVOLUTION, Issue 4 2009Xian-Lan DENG Abstract In the present study, the karyotypes of 34 populations belonging to 11 species and one variety of Heracleum from the Hengduan Mountains in China were examined. Chromosome numbers and the karyotypes of three species (H. souliei, H. kingdoni, and H. wenchuanense) are reported for the first time, as are the karyotypes of H. moellendorffii and H. henryi (tetraploid). Populations of H. candicans, H. franchetii, and H. kingdoni in the Hengduan Mountains were found to consist of a mixture of diploid and tetraploid plants. Except for four species of Heracleum, namely H. candicans, H. franchetii, H. henryi, and H. kingdoni, which have both diploid and tetraploid karyotypes, all other species of Heracleum are were found to be diploid. All karyotypes were found to belong to the 2A type of Stebbins, with the exception of H. candicans var. obtusifolium, which belongs to 2B, and H. hemsleyanum and H. franchetii (Mt. Dujuan, Daocheng, Sichuan, China), which belong to 1A. There was only a slight difference in the karyotype asymmetry index, which suggests a close kinship for species of Heracleum and that the entire phylogenetic development of Heracleum is relatively primitive. Species that exhibited advanced morphological features were also more advanced in karyotype structure, with the order of karyotype evolution being 1A,2A,2B. This phenomenon indicates that the species distributed in the Hengduan Mountains have not diverged completely and that the Hengduan Mountains are a relatively young and active area for the evolution of Heracleum. Polyploidization in Heracleum may be an important evolutionary mechanisms for some species, generating diversity. The biological attributes, distribution range, and the geological history of the genus have all played a part in accelerating the evolution through polyploidization or aneuploidization. It is known that as the distribution latitude of Heracleum decreases from north to south, the chromosome number, ploidy level, and asymmetry structure appear to increase. In the Hengduan Mountains, these tendencies are also evident. Finally, based on all the available cytogeographic data, we speculate that the more advanced tetraplont or aneuploid species of Heracleum in India may be derived from early diplont species that were distributed in the Caucasus region and Hengduan Mountains. The dispersal of Heracleum was from Eurasia to India, because this correlates with the emergence of the Himalayan Mountains through tectonic movement. Thus, the Hengduan Mountains are not only a center of diversity for Heracleum, but also a center of active speciation in modern times. [source] Combined ecological niche modelling and molecular phylogeography revealed the evolutionary history of Hordeum marinum (Poaceae) , niche differentiation, loss of genetic diversity, and speciation in Mediterranean Quaternary refugiaMOLECULAR ECOLOGY, Issue 8 2007SABINE S. JAKOB Abstract The Hordeum marinum species group consists of two annual grasses of western Eurasian saline meadows or marshes. The two grasses split in the Quaternary about two million years ago. Hordeum marinum and the diploid of Hordeum gussoneanum (2×) co-occur throughout the Mediterranean basin, while the autotetraploid cytotype of H. gussoneanum (4×) overlaps with its diploid progenitor geographically only in the utmost Eastern Mediterranean, extending from there eastwards into Asia. Using chloroplast sequences of the trnL-F region, six newly developed chloroplast microsatellite loci, ecological predictive models based on climate data, and the present geographical distribution of the two species we analysed differentiation processes in the H. marinum group. The chloroplast data indicated clear differences in the history of both species. For H. marinum we found a subdivision between genetically variable populations from the Iberian Peninsula and the more uniform populations from the remaining Mediterranean. As an explanation, we assume Pleistocene fragmentation of an earlier widespread population and survival in an Iberian and a Central Mediterranean glacial refuge. Chloroplast variation was completely absent within the cytotypes of H. gussoneanum, indicating a severe and recent genetic bottleneck. Due to this lack of chloroplast variation only the combination of ecological habitat modelling with molecular data analyses allowed conclusions about the history of this taxon. The distribution areas of the two cytotypes of H. gussoneanum overlap today in parts of Turkey, indicating an area with similar climate conditions during polyploid formation. However, after its origin the polyploid cytotype underwent a pronounced ecological shift, compared to its diploid progenitor, allowing it to colonize mountainous inland habitats between the Mediterranean basin and Afghanistan. The extant sympatric occurrence of H. marinum and H. gussoneanum 2× in the Mediterranean region is interpreted as a result of secondary contact after fast Holocene range expansion out of different ice age refugia. [source] Patterns of recurrent evolution and geographic parthenogenesis within apomictic polyploid Easter daises (Townsendia hookeri)MOLECULAR ECOLOGY, Issue 11 2006STACEY LEE THOMPSON Abstract Geographic patterns of parthenogenesis and the number of transitions from sexual diploidy to asexual (apomictic) autopolyploidy were examined for 40 populations of the Easter daisy, Townsendia hookeri. Analyses of pollen diameter and stainability characterized 15 sexual diploid and 25 apomictic polyploid populations from throughout the plant's western North American range. Sexual diploids were restricted to two Wisconsin refugia: Colorado/Wyoming, south of the ice sheets, and northern Yukon/Beringia. Chloroplast DNA sequencing uncovered 17 polymorphisms within the ndhF gene and trnK intron, yielding 10 haplotypes. Phylogenetic analyses indicated that five exclusively polyploid haplotypes were derived from four haplotypes that are shared among ploidies, conservatively inferring a minimum of four origins of apomictic polyploidy. Three of these apomictic polyploid origins were derived from southern sexual diploids, while the fourth origin was derived from northern sexual diploids. Analyses of regional diversity were suggestive of a formerly broad distribution for sexual diploids that has become subsequently fragmented, possibly due to the last round of glaciation. As sexual diploids were exclusively found north and south of the glacial maximum, while formerly glaciated areas were exclusively inhabited by asexual polyploids derived from both northern and southern sexual lineages, it is more likely that patterns of glaciation, as opposed to a particular latitudinal trend, played a causal role in the establishment of the observed pattern of geographic parthenogenesis in Easter daisies. 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