NETWORKS: AN INTERNATIONAL JOURNAL, Issue 2 2003
A. Corberán
Abstract This report is more than just a summary of some results of the present state of the art in routing and location problems. It summarizes theoretical insights, modeling approaches, and heuristic and exact algorithms for routing and location presented at the CORAL 2003 Workshop held in Tenerife (Spain). © 2003 Wiley Periodicals, Inc. [source]

Optimization of DNA Extraction from a Scleractinian Coral for the Detection of Thymine Dimers by Immunoassay,

PHOTOCHEMISTRY & PHOTOBIOLOGY, Issue 4 2007
Anastazia T. Banaszak
ABSTRACT Ultraviolet (UV)-B is known to cause DNA damage, principally by the formation of thymine dimers, but little research has been conducted in coral reef environments where UV doses are high. The majority of tropical reef-dwelling corals form a mutualistic symbiosis with the dinoflagellate Symbiodinium but few studies have been conducted on in situ DNA damage in corals and none have investigated the symbiotic components separately. The aim of this research was to quantify DNA damage in both the coral host and the dinoflagellate symbiont. The first step in this investigation was to optimize the extraction of DNA from the host, Porites astreoides, as well as the symbiont. The optimization was divided into a series of steps: the preservation of the samples, separation of the coral tissue from the skeleton, separation of the host tissue from the algal cells to prevent cross contamination as well as the extraction and purification of genomic DNA from the algae that are located intracellularly within the invertebrate animal tissue. The best preservation method was freezing at low temperatures without ethanol. After scraping with a razor blade, the coral tissue can be divided into host and algal components and the DNA extracted using modifications of published techniques yielding DNA suitable for the quantification of thymine dimer formation using antibodies. Preliminary data suggest that in P. astreoides collected from 1 m depth, thymine dimers form approximately 2.8 times more frequently in the host DNA than in the DNA of its symbionts. [source]

ChemInform Abstract: New Dolabellane-Type Diterpenoids from the Okinawan Soft Coral of the Genus Clavularia.

CHEMINFORM, Issue 19 2002
Kazuo Iguchi
Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a "Full Text" option. The original article is trackable via the "References" option. [source]

Alteration of normal cellular profiles in the scleractinian coral (Pocillopora damicornis) following laboratory exposure to fuel oil

ENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 12 2006
Luc Rougée
Abstract Petroleum contamination from oil spills is a continuing threat to our ocean's fragile ecosystems. Herein, we explored the effects of the water-soluble fraction of crude oil on a stony coral, Pocillopora damicornis (Linneaeus 1758). We developed methods for exposing corals to various concentrations of crude oil and for assessing the potential molecular responses of the corals. Corals were exposed to water-accommodated fraction solutions, and appropriate cellular biomarkers were quantified. When compared to the "healthy" control specimens, exposed corals exhibited shifts in biomarker concentrations that were indicative of a shift from homeostasis. Significant changes were seen in cytochrome P450 1-class, cytochrome P450 2-class, glutathione- S -transferase-pi, and cnidarian multixenobiotic resistance protein-1 biomarkers, which are involved the cellular response to, and manipulation and excretion of, toxic compounds, including polycyclic aromatic hydrocarbons. A shift in biomarkers necessary for porphyrin production (e.g., protoporphyrinogen oxidase IX and ferrochelatase) and porphyrin destruction (e.g., heme oxygenase-1 and invertebrate neuroglobin homologue) illustrates only one of the cellular protective mechanisms. The response to oxidative stress was evaluated through measurements of copper/zinc superoxide dismutase-1 and DNA glycosylase MutY homologue-1 concentrations. Likewise, changes in heat shock protein 70 and small heat shock proteins indicated an adjustment in the cellular production of proteins. Finally, the results of this laboratory study were nearly identical to what we observed previously among corals of a different species, Porites lobata, exposed to an oil spill in the field after the grounding of the Merchant Vessel Kyowa Violet. [source]

Computational Biology Approaches to Plant Metabolism and Photosynthesis: Applications for Corals in Times of Climate Change and Environmental Stress

JOURNAL OF INTEGRATIVE PLANT BIOLOGY, Issue 8 2010
M. James C. Crabbe
Knowledge of factors that are important in reef resilience helps us to understand how reef ecosystems react following major anthropogenic and environmental disturbances. The symbiotic relationship between the photosynthetic zooxanthellae algal cells and corals is that the zooxanthellae provide the coral with carbon, while the coral provides protection and access to enough light for the zooxanthellae to photosynthesise. This article reviews some recent advances in computational biology relevant to photosynthetic organisms, including Beyesian approaches to kinetics, computational methods for flux balances in metabolic processes, and determination of clades of zooxanthallae. Application of these systems will be important in the conservation of coral reefs in times of climate change and environmental stress. [source]

Life strategies of solitary undissepimented rugose corals from the upper member of the Picos de Europa Formation (Moscovian, Carboniferous, Cantabrian Mountains, NW Spain)

LETHAIA, Issue 3 2001
SERGIO RODRÍGUEZ
Rugose corals belonging to the orders Metriophyllina, Stereolasmatina and Plerophyllina have been identified in the upper member of the Picos de Europa Formation (Moscovian). Corals occur in crinoidal limestones containing common bryozoans. The coral assemblage shows a high diversity. Mode of preservation and spatial distribution of corals demonstrate close relationships with biogenic components such as crinoids, bryozoans, brachiopods and bivalves. The morphology of corals provides valuable data for identifying their life strategies, four of which have been identified: liberosessile with straight growth, liberosessile with curved growth, fixosessile with straight growth and fixosessile with curved growth. Most corals from the Picos de Europa Formation appear to have been fixosessile with straight growth; they attached themselves to bioclasts and subsequently developed radiciform processes (mainly talons) to remain straight. [source]

Structural,functional Aspects in the Evolution of Operculate Corals (Rugosa)

PALAEONTOLOGY, Issue 4 2002
Michael Gudo
Among the Rugosa operculae were developed by only a few genera. One is the slipper,shaped Calceola and another is the pyramidal shaped Goniophyllum. On the basis of biological and morphological knowledge of recent corals, the two different bauplans of the soft bodies of Calceola and Goniophyllum have been reconstructed. The soft body (i.e. the polyp) of a rugose coral is thought to have all the basic structures of anthozoan polyps: a barrel,like body shape, a flat oral disc with tentacles, and a mouth from which a pharynx reaches inside the gastric cavity. Furthermore, as in all Anthozoa, Rugosa had internal mesenteries that act as tensile cords; during growth in the diameter further mesenteries were inserted. In contrast to all other Anthozoa, in the Rugosa new single mesenteries were added in four insertion sectors. The bauplans of Calceola and Goniophyllum differ in the pattern of mesentery insertion into these four sectors. Calceola had a serial insertion pattern and Goniophyllum had a symmetrical insertion pattern. They are representatives of the two different bauplans within the Rugosa. The lid corals are examples of convergent evolved genera; Calceola as well as Goniophyllum originated by quite simple modifications of the ancestral type. The peculiar shapes, the operculae and especially the straight hinges between the calyx and the lid(s) result only from mechanical necessity. Under special conditions (such as high sedimentation rates) these modifications of the corallites represent suitable tactics for survival. [source]

Poor Performance of Corals Transplanted onto Substrates of Short Durability

RESTORATION ECOLOGY, Issue 4 2010
Sebastian C.A. Ferse
Worldwide, coral reefs are degrading due to increasing anthropogenic pressures. Yet, management of reefs still falls short of effectively addressing these threats, and active restoration methods are increasingly being called for. Coral transplantation is frequently advocated as a possible means of coral reef rehabilitation. Fragments produced in coral nurseries or farms have been proposed as a potential source for transplantation, and culture media (inexpensive but non-durable materials such as wood or bamboo) may serve as transplantation substrate if placed directly in the reef. However, the performance of coral transplants attached to such substrates has not been examined yet. Here, the long-term survival of transplants attached to bamboo substrates is reported. A total of 6,164 fragments of 4 coral species (Acroporids and Pocilloporids) were monitored for up to 20 months at three sites in North Sulawesi/Indonesia. Bamboo failed as a suitable inexpensive substrate in at least two of the three sites examined. Mortality of transplants 2 years after transplantation was high in three of the four species (67,95%) and was partially linked to substrate disintegration. The results show that, in places were currents or waves threaten to dislocate transplants, a higher effort needs to be directed at a strong and durable attachment of transplanted corals. [source]

Heterotrophy in Tropical Scleractinian Corals

BIOLOGICAL REVIEWS, Issue 1 2009
Fanny Houlbrèque
Abstract The dual character of corals, that they are both auto- and heterotrophs, was recognized early in the twentieth Century. It is generally accepted that the symbiotic association between corals and their endosymbiotic algae (called zooxanthellae) is fundamental to the development of coral reefs in oligotrophic tropical oceans because zooxanthellae transfer the major part of their photosynthates to the coral host (autotrophic nutrition). However, numerous studies have confirmed that many species of corals are also active heterotrophs, ingesting organisms ranging from bacteria to mesozooplankton. Heterotrophy accounts for between 0 and 66% of the fixed carbon incorporated into coral skeletons and can meet from 15 to 35% of daily metabolic requirements in healthy corals and up to 100% in bleached corals. Apart from this carbon input, feeding is likely to be important to most scleractinian corals, since nitrogen, phosphorus, and other nutrients that cannot be supplied from photosynthesis by the coral's symbiotic algae must come from zooplankton capture, particulate matter or dissolved compounds. A recent study showed that during bleaching events some coral species, by increasing their feeding rates, are able to maintain and restore energy reserves. This review assesses the importance and effects of heterotrophy in tropical scleractinian corals. We first provide background information on the different food sources (from dissolved organic matter to meso- and macrozooplankton). We then consider the nutritional inputs of feeding. Finally, we review feeding effects on the different physiological parameters of corals (tissue composition, photosynthesis and skeletal growth). [source]

Documenting Loss of Large Trophy Fish from the Florida Keys with Historical Photographs

CONSERVATION BIOLOGY, Issue 3 2009
LOREN McCLENACHAN
arrecifes de coral; ecología histórica; directrices cambiantes; peces de arrecife; sobrepesca Abstract:,A loss of large vertebrates has occurred in aquatic and terrestrial ecosystems, but data to measure long-term population changes are sparse. Historical photographs provide visual and quantitative evidence of changes in mean individual size and species composition for groups of marine fish that have been targeted by sport fishing. I measured such trends for 13 groups of recreationally caught "trophy" reef fish with photographs taken in Key West, Florida, from 1956 to 2007. The mean fish size declined from an estimated 19.9 kg (SE 1.5) to 2.3 kg (SE 0.3), and there was a major shift in species composition. Landings from 1956 to 1960 were dominated by large groupers (Epinephelus spp.), and other large predatory fish were commonly caught, including sharks with an average length of just <2 m. In contrast, landings in 2007 were composed of small snappers (Lutjanus spp. and Ocyurus chrysurus) with an average length of 34.4 cm (SE 0.62), and the average length of sharks declined by more than 50% over 50 years. Major declines in the size of fish caught were not reflected in the price of fishing trips, so customers paid the same amount for a less-valuable product. Historical photographs provide a window into a more pristine coral reef ecosystem that existed a half a century ago and lend support to current observations that unfished reef communities are able to support large numbers of large-bodied fish. Resumen:,Una pérdida de vertebrados mayores ha ocurrido en ecosistemas acuáticos y terrestres, pero los datos para medir los cambios poblaciones a largo plazo son escasos. Las fotografías históricas proporcionan evidencia visual y cuantitativa de cambios en el tamaño individual promedio y de la composición de especies en grupos de peces marinos que han sido blanco de la pesca deportiva. Medí esas tendencias en 13 grupos de peces de arrecife capturados recreativamente como "trofeos" mediante fotografías tomadas en Key West, Florida, desde 1956 a 2007. El peso promedio de los peces declinó de unos 19.9 kg (ES 1.5) a 2.3 kg (ES 0.3), y hubo un cambio mayor en la composición de especies. Las capturas entre 1956 y 1960 estuvieron dominadas por meros (Epinephelus spp.) grandes, y otros peces depredadores eran capturados comúnmente, incluyendo tiburones con una longitud promedio de poco menos de 2m. En contraste, las capturas en 2007 fueron compuestas de pargos (Lutjanus spp. y Ocyurus chrysurus) pequeños con una longitud promedio de 34.4 cm (ES 0.62), y la longitud promedio de los tiburones declinó más de 50% en 50 años. La gran declinación en el tamaño de los peces capturados no se reflejó en los precios de los viajes de pesca, así que los clientes pagaron la misma cantidad por un producto menos valioso. Las fotografías históricas proporcionan una visión de un ecosistema arrecifal coralino prístino que existió hace medio siglo y proporcionan soporte a los comentarios actuales de que las comunidades arrecifales no explotadas son capaces de soportar numerosos peces de talla grande. [source]

Consumer Control of Salt Marshes Driven by Human Disturbance

CONSERVATION BIOLOGY, Issue 3 2008
MARK D. BERTNESS
control de consumidor; impactos humanos; conservación de pantano de sal; cascadas de trophic Abstract:,Salt marsh ecosystems are widely considered to be controlled exclusively by bottom,up forces, but there is mounting evidence that human disturbances are triggering consumer control in western Atlantic salt marshes, often with catastrophic consequences. In other marine ecosystems, human disturbances routinely dampen (e.g., coral reefs, sea grass beds) and strengthen (e.g., kelps) consumer control, but current marsh theory predicts little potential interaction between humans and marsh consumers. Thus, human modification of top,down control in salt marshes was not anticipated and was even discounted in current marsh theory, despite loud warnings about the potential for cascading human impacts from work in other marine ecosystems. In spite of recent experiments that have challenged established marsh dogma and demonstrated consumer-driven die-off of salt marsh ecosystems, government agencies and nongovernmental organizations continue to manage marsh die-offs under the old theoretical framework and only consider bottom,up forces as causal agents. This intellectual dependency of many coastal ecologists and managers on system-specific theory (i.e., marsh bottom,up theory) has the potential to have grave repercussions for coastal ecosystem management and conservation in the face of increasing human threats. We stress that marine vascular plant communities (salt marshes, sea grass beds, mangroves) are likely more vulnerable to runaway grazing and consumer-driven collapse than is currently recognized by theory, particularly in low-diversity ecosystems like Atlantic salt marshes. Resumen:,Se ha considerado extensamente que los ecosistemas de marismas son controlados exclusivamente por dinámicas abajo-arriba, pero se ha acumulado evidencia de que las perturbaciones humanas están provocando el control por consumidores en marismas del Atlántico occidental, a menudo con consecuencias catastróficas. En otros ecosistemas marinos, las perturbaciones humanas rutinariamente disminuyen (e.g., arrecifes de coral, pastos marinos) y refuerzan (e.g., varec) el control por consumidores, pero la teoría de marismas actual predice una leve interacción potencial entre humanos y consumidores en las marismas. Por lo tanto, las modificaciones humanas al control arriba-abajo en las marismas no estaba anticipada y aun era descontada en la teoría de marismas actual, a pesar de advertencias sobre el potencial de impactos humanos en cascada en trabajos en otros ecosistemas marinos. No obstante los experimentos recientes que han desafiado el dogma de marismas establecido y que han demostrado la desaparición gradual de marismas conducida por consumidores, las agencias gubernamentales y las organizaciones no gubernamentales continúan manejando la disminución de marismas en el marco de la teoría vieja y sólo consideran como agentes causales a factores abajo-arriba. Esta dependencia intelectual en la teoría sistema-específico (i.e., teoría de marismas abajo-arriba) de muchos ecólogos y manejadores costeros tiene el potencial de tener repercusiones graves para el manejo y conservación de ecosistemas costeros frente a las crecientes amenazas humanas. Enfatizamos que las comunidades plantas vasculares marinas (marismas, pastos marinos, manglares) son potencialmente más vulnerables al pastoreo descontrolado y al colapso conducido por consumidores que lo que reconoce la teoría actualmente, particularmente en ecosistemas con baja diversidad como las marismas del Atlántico. [source]

Experimental Assessment of Coral Reef Rehabilitation Following Blast Fishing

CONSERVATION BIOLOGY, Issue 1 2005
HELEN E. FOX
arrecifes de Indonesia; recuperación de arrecife de coral; restauración de arrecifes Abstract:,Illegal fishing with explosives has damaged coral reefs throughout Southeast Asia. In addition to killing fish and other organisms, the blasts shatter coral skeletons, leaving fields of broken rubble that shift in the current, abrading or burying new coral recruits, and thereby slowing or preventing reef recovery. Successful restoration and rehabilitation efforts can contribute to coral reef conservation. We used field experiments to assess the effectiveness of different low-cost methods for coral reef rehabilitation in Komodo National Park (KNP), Indonesia. Our experiments were conducted at three different spatial scales. At a scale of 1 × 1 m plots, we tested three different rehabilitation methods: rock piles, cement slabs, and netting pinned to the rubble. Significantly more corals per square meter grew on rocks, followed by cement, netting, and untreated rubble, although many plots were scattered by strong water current or buried by rubble after 2.5 years. To test the benefits of the most successful treatment, rocks, at more realistic scales, we established 10 × 10 m plots of rock piles at each of our nine sites in 2000. Three years after installation, coverage by hard corals on the rocks continued to increase, although rehabilitation in high current areas remained the most difficult. In 2002 rehabilitation efforts in KNP were increased over 6000 m2 to test four rock pile designs at each of four rubble field sites. Assuming that there is an adequate larval supply, using rocks for simple, low-budget, large-scale rehabilitation appears to be a viable option for restoring the structural foundation of damaged reefs. Resumen:,La pesca ilegal con explosivos ha dañado a arrecifes de coral en el sureste de Asia. Además de matar a peces y otros organismos, las explosiones destruyen esqueletos de corales, dejando campos de escombros rotos que se mueven con la corriente, erosionando o enterrando a reclutas de coral nuevos y por lo tanto disminuyen o previenen la recuperación del coral. Esfuerzos exitosos de restauración y rehabilitación pueden contribuir a la conservación de arrecifes de coral. Usamos experimentos de campo para evaluar la efectividad de diferentes métodos de bajo costo para la rehabilitación de arrecifes de coral en el Parque Nacional Komodo (PNK), Indonesia. Desarrollamos nuestros experimentos en tres escalas espaciales diferentes. A una escala de parcelas de 1 x 1 m, probamos tres métodos de rehabilitación: pilas de rocas, losas de cemento y redes sobre el escombro. Crecieron significativamente más corales por metro cuadrado sobre rocas, seguido por el cemento, redes y escombro sin tratamiento, aunque muchas parcelas fueron dispersadas por la fuerte corriente de agua o enterradas por escombros después de 2.5 años. Para probar los beneficios del tratamiento más exitoso, rocas, a escalas más realistas, en 2000 establecimos parcelas de 10 x10 m con pilas de rocas en cada unos de nuestros nueve sitios. Tres años después, la cobertura de corales duros sobre las rocas continuó incrementando, aunque la rehabilitación en áreas con corrientes fuertes fue la más difícil. En 2002, los esfuerzos de rehabilitación en PNK se incrementaron a 6000 m2 para probar cuatro diseños de pilas de rocas en cada uno de los cuatro sitios con escombros. Asumiendo que hay una adecuada existencia de larvas, la utilización de rocas para rehabilitación simple, de bajo costo y gran escala parece ser una opción viable para la restauración de la base estructural de arrecifes dañados. [source]

Cnidarians and human skin

DERMATOLOGIC THERAPY, Issue 1 2002
William A. Burke
Cnidarians are aquatic animals including the jellyfish, the Portuguese man-of-war, fire coral, hydroids, sea anemones, and coral. Many of these can harm human skin and rarely some envenomations can lead to a serious or even fatal outcome. This article discusses the varied creatures in this group that can harm man and potentially lead to serious envenomation syndromes. Treatment of cnidarian injuries and stings is discussed. [source]

Human impacts on the species,area relationship in reef fish assemblages

ECOLOGY LETTERS, Issue 9 2007
Derek P. Tittensor
Abstract The relationship between species richness and area is one of the oldest, most recognized patterns in ecology. Here we provide empirical evidence for strong impacts of fisheries exploitation on the slope of the species,area relationship (SAR). Using comparative field surveys of fish on protected and exploited reefs in three oceans and the Mediterranean Sea, we show that exploitation consistently depresses the slope of the SAR for both power-law and exponential models. The magnitude of change appears to be proportional to fishing intensity. Results are independent of taxonomic resolution and robust across coral and rocky reefs, sampling protocols and statistical methods. Changes in species richness, relative abundance and patch occupancy all appear to contribute to this pattern. We conclude that exploitation pressure impacts the fundamental scaling of biodiversity as well as the species richness and spatial distribution patterns of reef fish. We propose that species,area curves can be sensitive indicators of community-level changes in biodiversity, and may be useful in quantifying the human imprint on reef biodiversity, and potentially elsewhere. [source]

Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality

ECOLOGY LETTERS, Issue 7 2006
Jennifer E. Smith
Abstract Declines in coral cover are generally associated with increases in the abundance of fleshy algae. In many cases, it remains unclear whether algae are responsible, directly or indirectly, for coral death or whether they simply settle on dead coral surfaces. Here, we show that algae can indirectly cause coral mortality by enhancing microbial activity via the release of dissolved compounds. When coral and algae were placed in chambers together but separated by a 0.02 ,m filter, corals suffered 100% mortality. With the addition of the broad-spectrum antibiotic ampicillin, mortality was completely prevented. Physiological measurements showed complementary patterns of increasing coral stress with proximity to algae. Our results suggest that as human impacts increase and algae become more abundant on reefs a positive feedback loop may be created whereby compounds released by algae enhance microbial activity on live coral surfaces causing mortality of corals and further algal growth. [source]

Human sewage identified as likely source of white pox disease of the threatened Caribbean elkhorn coral, Acropora palmata

ENVIRONMENTAL MICROBIOLOGY, Issue 5 2010
Kathryn Patterson Sutherland
Summary Caribbean elkhorn coral, Acropora palmata, has been decimated in recent years, resulting in the listing of this species as threatened under the United States Endangered Species Act. A major contributing factor in the decline of this iconic species is white pox disease. In 2002, we identified the faecal enterobacterium, Serratia marcescens, as an etiological agent for white pox. During outbreaks in 2003 a unique strain of S. marcescens was identified in both human sewage and white pox lesions. This strain (PDR60) was also identified from corallivorious snails (Coralliophila abbreviata), reef water, and two non-acroporid coral species, Siderastrea siderea and Solenastrea bournoni. Identification of PDR60 in sewage, diseased Acropora palmata and other reef invertebrates within a discrete time frame suggests a causal link between white pox and sewage contamination on reefs and supports the conclusion that humans are a likely source of this disease. [source]

Human enteric viruses in groundwater indicate offshore transport of human sewage to coral reefs of the Upper Florida Keys

ENVIRONMENTAL MICROBIOLOGY, Issue 4 2010
J. Carrie Futch
Summary To address the issue of human sewage reaching corals along the main reef of the Florida Keys, samples were collected from surface water, groundwater and coral [surface mucopolysaccharide layers (SML)] along a 10 km transect near Key Largo, FL. Samples were collected semi-annually between July 2003 and September 2005 and processed for faecal indicator bacteria (faecal coliform bacteria, enterococci and Clostridium perfringens) and human-specific enteric viruses (enterovirus RNA and adenovirus DNA) by (RT)-nested polymerase chain reaction. Faecal indicator bacteria concentrations were generally higher nearshore and in the coral SML. Enteric viruses were evenly distributed across the transect stations. Adenoviruses were detected in 37 of 75 samples collected (49.3%) whereas enteroviruses were only found in 8 of 75 samples (10.7%). Both viruses were detected twice as frequently in coral compared with surface water or groundwater. Offshore, viruses were most likely to be found in groundwater, especially during the wet summer season. These data suggest that polluted groundwater may be moving to the outer reef environment in the Florida Keys. [source]

Microbial functional structure of Montastraea faveolata, an important Caribbean reef-building coral, differs between healthy and yellow-band diseased colonies

ENVIRONMENTAL MICROBIOLOGY, Issue 2 2010
Nikole E. Kimes
Summary A functional gene array (FGA), GeoChip 2.0, was used to assess the biogeochemical cycling potential of microbial communities associated with healthy and Caribbean yellow band diseased (YBD) Montastraea faveolata. Over 6700 genes were detected, providing evidence that the coral microbiome contains a diverse community of archaea, bacteria and fungi capable of fulfilling numerous functional niches. These included carbon, nitrogen and sulfur cycling, metal homeostasis and resistance, and xenobiotic contaminant degradation. A significant difference in functional structure was found between healthy and YBD M. faveolata colonies and those differences were specific to the physical niche examined. In the surface mucopolysaccharide layer (SML), only two of 31 functional categories investigated, cellulose degradation and nitrification, revealed significant differences, implying a very specific change in microbial functional potential. Coral tissue slurry, on the other hand, revealed significant changes in 10 of the 31 categories, suggesting a more generalized shift in functional potential involving various aspects of nutrient cycling, metal transformations and contaminant degradation. This study is the first broad screening of functional genes in coral-associated microbial communities and provides insights regarding their biogeochemical cycling capacity in healthy and diseased states. [source]

Antagonistic interactions among coral-associated bacteria

ENVIRONMENTAL MICROBIOLOGY, Issue 1 2010
Krystal L. Rypien
Summary Reef-building corals are comprised of close associations between the coral animal, symbiotic zooxanthellae, and a diversity of associated microbes (including Bacteria, Archaea and Fungi). Together, these comprise the coral holobiont , a paradigm that emphasizes the potential contributions of each component to the overall function and health of the coral. Little is known about the ecology of the coral-associated microbial community and its hypothesized role in coral health. We explored bacteria,bacteria antagonism among 67 bacterial isolates from the scleractinian coral Montastrea annularis at two temperatures using Burkholder agar diffusion assays. A majority of isolates exhibited inhibitory activity (69.6% of isolates at 25°C, 52.2% at 31°C), with members of the ,-proteobacteria (Vibrionales and Alteromonadales) being especially antagonistic. Elevated temperatures generally reduced levels of antagonism, although the effects were complex. Several potential pathogens were observed in the microbial community of apparently healthy corals, and 11.6% of isolates were able to inhibit the growth of the coral pathogen Vibrio shiloi at 25°C. Overall, this study demonstrates that antagonism could be a structuring force in coral-associated microbial communities and may contribute to pathogenesis as well as disease resistance. [source]

Alteration of normal cellular profiles in the scleractinian coral (Pocillopora damicornis) following laboratory exposure to fuel oil

Climate change and the future for coral reef fishes

FISH AND FISHERIES, Issue 3 2008
Philip L Munday
Abstract Climate change will impact coral-reef fishes through effects on individual performance, trophic linkages, recruitment dynamics, population connectivity and other ecosystem processes. The most immediate impacts will be a loss of diversity and changes to fish community composition as a result of coral bleaching. Coral-dependent fishes suffer the most rapid population declines as coral is lost; however, many other species will exhibit long-term declines due to loss of settlement habitat and erosion of habitat structural complexity. Increased ocean temperature will affect the physiological performance and behaviour of coral reef fishes, especially during their early life history. Small temperature increases might favour larval development, but this could be counteracted by negative effects on adult reproduction. Already variable recruitment will become even more unpredictable. This will make optimal harvest strategies for coral reef fisheries more difficult to determine and populations more susceptible to overfishing. A substantial number of species could exhibit range shifts, with implications for extinction risk of small-range species near the margins of reef development. There are critical gaps in our knowledge of how climate change will affect tropical marine fishes. Predictions are often based on temperate examples, which may be inappropriate for tropical species. Improved projections of how ocean currents and primary productivity will change are needed to better predict how reef fish population dynamics and connectivity patterns will change. Finally, the potential for adaptation to climate change needs more attention. Many coral reef fishes have geographical ranges spanning a wide temperature gradient and some have short generation times. These characteristics are conducive to acclimation or local adaptation to climate change and provide hope that the more resilient species will persist if immediate action is taken to stabilize Earth's climate. [source]

Diversity and functional importance of coral-feeding fishes on tropical coral reefs

FISH AND FISHERIES, Issue 3 2008
Andrew J. Cole
Abstract Fishes that feed from live corals (corallivores) are a conspicuous component of healthy coral reef environments. However, knowledge of the occurrence and ecological significance of this feeding mode is fragmentary. Historically, very few fish were considered capable of feeding from live coral, and those few that did were considered ecologically insignificant. More recently, the role of corallivores has been re-evaluated; published records document 128 corallivorous fish species from 11 different families, with 69 of these belonging to the family Chaetodontidae. Other families, including the Labridae, Tetraodontidae, Balistidae, Monacanthidae, Pomacentridae and Scaridae, all have between seven and ten coral-feeding species. One-third of coral-feeding fishes feed almost exclusively on corals, with more than 80% of their diet based on coral. Corallivorous fish show distinct prey preferences and consume only a small subset of available corals, usually the genera Acropora, Pocillopora and Porites. This selective predation by corallivores can limit abundance and distribution of preferred corals. Chronic predation by corallivores may also exacerbate effects of coral disturbance (e.g. climate-induced coral bleaching), impeding reef recovery and causing further coral loss. Conversely, the cover of preferred corals can be a primary determinant of corallivore abundance and physiological condition. Owing to this close association, obligate corallivores invariably decline in response to loss of coral cover. Increased knowledge of the number of corallivores and their diets suggest that this feeding mode is more important to coral reef food webs than traditionally thought. [source]

Trouble on the reef: the imperative for managing vulnerable and valuable fisheries

FISH AND FISHERIES, Issue 3 2005
Yvonne Sadovy
Abstract Reef fishes are significant socially, nutritionally and economically, yet biologically they are vulnerable to both over-exploitation and degradation of their habitat. Their importance in the tropics for living conditions, human health, food security and economic development is enormous, with millions of people and hundreds of thousands of communities directly dependent, and many more indirectly so. Reef fish fisheries are also critical safety valves in times of economic or social hardship or disturbance, and are more efficient, less wasteful and support far more livelihoods per tonne produced than industrial scale fisheries. Yet, relative to other fisheries globally, those associated with coral reefs are under-managed, under-funded, under-monitored, and as a consequence, poorly understood or little regarded by national governments. Even among non-governmental organizations, which are increasingly active in tropical marine issues, there is typically little focus on reef-associated resources, the interest being more on biodiversity per se or protection of coral reef habitat. This essay explores the background and history to this situation, examines fishery trends over the last 30 years, and charts a possible way forward given the current realities of funding, capacity, development patterns and scientific understanding of coral reef ecosystems. The luxury live reef food-fish trade is used throughout as a case study because it exemplifies many of the problems and challenges of attaining sustainable use of coral reef-associated resources. The thesis developed is that sustaining reef fish fisheries and conserving biodiversity can be complementary, rather than contradictory, in terms of yield from reef systems. I identify changes in perspectives needed to move forward, suggest that we must be cautious of ,fashionable' solutions or apparent ,quick fixes', and argue that fundamental decisions must be made concerning the short and long-term values of coral reef-associated resources, particularly fish, for food and cash and regarding alternative sources of protein. Not to address the problems will inevitably lead to growing poverty, hardship and social unrest in many areas. [source]

Human-caused stratigraphic mixing of a coastal Hawaiian midden during prehistory: Implications for interpreting cultural deposits

GEOARCHAEOLOGY: AN INTERNATIONAL JOURNAL, Issue 5 2010
Sasiphan Khaweerat
Archaeologists rely on the spatial and temporal distribution of artifacts and other site-based materials to understand the stratigraphic integrity of the matrix in which remains are embedded. Although they are aware of taphonomic and site formation processes that can cause post-depositional movement of objects, misinterpretation can occur. We used high-precision 230Th dating of branch corals found throughout cultural layers of a coastal Hawaiian midden to identify the effects of post-depositional disturbances to the archaeological record. Fifteen corals distributed in three cultural layers of a Mo'omomi bay site on west Moloka'i, Hawaiian Islands, were 230Th dated between A.D. 1513 and A.D. 1623. Even though the cultural layers appeared visually intact, the positions of the dated coral samples indicate stratigraphic mixing as there is no positive age,depth correlation. Consequently, all cultural layers should be considered one analytical unit for analysis of contents. This study is applicable to other Pacific archaeological sites, especially throughout Hawaii and East Polynesia generally, that have well-preserved branch coral for 230Th dating. © 2010 Wiley Periodicals, Inc. [source]

Exploitation and habitat degradation as agents of change within coral reef fish communities

GLOBAL CHANGE BIOLOGY, Issue 12 2008
S. K. WILSON
Abstract Over-exploitation and habitat degradation are the two major drivers of global environmental change and are responsible for local extinctions and declining ecosystem services. Here we compare the top-down effect of exploitation by fishing with the bottom-up influence of habitat loss on fish communities in the most diverse of ecological systems, coral reefs. Using a combination of multivariate techniques and path analyses, we illustrate that the relative importance of coral cover and fishing in controlling fish abundance on remote Fijian reefs varies between species and functional groups. A decline in branching Acropora coral is strongly associated with a decline in abundance of coral-feeding species, and a decrease in coral-associated habitat complexity, which has indirectly contributed to reduced abundance of small-bodied damselfish. In contrast, reduced fishing pressure, brought about by declining human populations and a shift to alternate livelihoods, is associated with increased abundance of some piscivores and fisheries target species. However, availability of prey is controlled by coral-associated habitat complexity and appears to be a more important driver of total piscivore abundance compared with fishing pressure. Effects of both fishing and coral loss are stronger on individual species than functional groups, as variation in the relative importance of fishing or coral loss among species within the same functional group attenuated the impact of either of these potential drivers at the functional level. Overall, fishing continues to have an influence on Fijian fish communities; however, habitat loss is currently the overriding agent of change. The importance of coral loss mediated by climate change is expected to have an increasing contribution to fish community dynamics, particularly in remote locations or where the influence of fishing is waning. [source]

Interacting effects of CO2 partial pressure and temperature on photosynthesis and calcification in a scleractinian coral

GLOBAL CHANGE BIOLOGY, Issue 11 2003
Stéphanie Reynaud
Abstract We show here that CO2 partial pressure (pCO2) and temperature significantly interact on coral physiology. The effects of increased pCO2 and temperature on photosynthesis, respiration and calcification rates were investigated in the scleractinian coral Stylophora pistillata. Cuttings were exposed to temperatures of 25°C or 28°C and to pCO2 values of ca. 460 or 760 ,atm for 5 weeks. The contents of chlorophyll c2 and protein remained constant throughout the experiment, while the chlorophyll a content was significantly affected by temperature, and was higher under the ,high-temperature,high- pCO2' condition. The cell-specific density was higher at ,high pCO2' than at ,normal pCO2' (1.7 vs. 1.4). The net photosynthesis normalized per unit protein was affected by both temperature and pCO2, whereas respiration was not affected by the treatments. Calcification decreased by 50% when temperature and pCO2 were both elevated. Calcification under normal temperature did not change in response to an increased pCO2. This is not in agreement with numerous published papers that describe a negative relationship between marine calcification and CO2. The confounding effect of temperature has the potential to explain a large portion of the variability of the relationship between calcification and pCO2 reported in the literature, and warrants a re-evaluation of the projected decrease of marine calcification by the year 2100. [source]

Small and large anemonefishes can coexist using the same patchy resources on a coral reef, before habitat destruction

JOURNAL OF ANIMAL ECOLOGY, Issue 5 2002
Akihisa Hattori
Summary 1According to meta-population models, a superior competitor and a superior disperser can coexist in a patchy environment. The two anemonefishes, a large aggressive Amphiprion clarkii Bennett and a small less-aggressive A. perideraion Bleeker, use the same host anemone Heteractis crispa Ehrenberg on a coral reef, Okinawa, Japan, where most of the hosts disappeared after the coral bleaching in 1998. Their microhabitat (host) use and coexistence, and the quality and quantity of microhabitats were investigated in 1988, 1989, 1999 and 2000 on the coral reef. Their interspecific interaction was also examined. 2Before the habitat destruction, the two species coexisted. Although A. clarkii was behaviourally dominant over A. perideraion in a cohabiting group, A. perideraion was a superior competitor in terms of site displacement, because A. perideraion could displace a microhabitat. Adult A. clarkii emigrated from a cohabiting group probably due to the high cost of interactions with adult A. perideraion . Although it is easier to defend a small area for a larger species, sharing a host with adult A. perideraion may not pay for A. clarkii because A. clarkii needs a larger area. 3A. clarkii was not only a superior disperser, which was able to find a vacated host, but also a pioneer species that was able to use newly settled small hosts. Larval A. clarkii settled on such a small host because they were able to move to larger hosts for future reproduction, while A. perideraion did not settle on a small host because of low mobility after settlement. Microhabitat (host) with various sizes might have promoted their coexistence. 4After the habitat destruction, the superior competitor A. perideraion went extinct locally due probably to lack of small host utilization ability. The present study implies that the difference in body size between the two competitors plays an important role in their coexistence, because species with different body sizes can have different mobility and require different amounts of resources. [source]

Long-standing environmental conditions, geographic isolation and host,symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genus Symbiodinium

JOURNAL OF BIOGEOGRAPHY, Issue 5 2010
Todd C. LaJeunesse
Abstract Aim, This study examines the importance of geographic proximity, host life history and regional and local differences in environment (temperature and water clarity) in driving the ecological and evolutionary processes underpinning the global patterns of diversity and distribution of symbiotic dinoflagellates. By comparing and contrasting coral,algal symbioses from isolated regions with differing environmental conditions, we may assess the potential of coral communities to respond to significant changes in climate. Location, Indian Ocean. Methods, Community assemblages of obligate symbiotic invertebrates were sampled at numerous sites from two regions, the north-eastern Indian Ocean (Andaman Sea, western Thailand) and the western Indian Ocean (Zanzibar, Tanzania). Molecular genetic methods, including denaturing gradient gel electrophoresis analysis of the ribosomal internal transcribed spacers, DNA sequencing and microsatellite genotyping, were used to characterize the ,species' diversity and evolutionary relationships of symbiotic dinoflagellates (genus Symbiodinium). Host,symbiont specificity, geographic isolation and local and regional environmental factors were evaluated in terms of their importance in governing the distribution and prevalence of certain symbiont taxa. Results, Host-generalist symbionts (C3u and D1-4, formerly D1a now designated Symbiodinium trenchi) frequently occurred alone and sometimes together in hosts with horizontal modes of symbiont acquisition. However, the majority of Symbiodinium diversity consisted of apparently host-specific ,species'. Clade C Symbiodinium were diverse and dominated host assemblages from sites sampled in the western Indian Ocean, a pattern analogous to symbiont communities on the Great Barrier Reef with similar environmental conditions. Clade D Symbiodinium were diverse and occurred frequently in hosts from the north-eastern Indian Ocean, especially at inshore locations, where temperatures are warmer, water turbidity is high and large tidal exchanges commonly expose coral populations to aerial desiccation. Main conclusions, Regional and local differences in cnidarian,algal combinations indicate that these symbioses are ecologically and evolutionarily responsive and can thrive under various environmental conditions. The high temperatures and turbid conditions of the north-eastern Indian Ocean partly explain the ecological success of Clade D Symbiodinium relative to Clade C. Phylogenetic, ecological and population genetic data further indicate that Clade D has undergone an adaptive radiation, especially in regions around Southeast Asia, during the Pleistocene. [source]

Restoring depleted coral-reef fish populations through recruitment enhancement: a proof of concept

JOURNAL OF FISH BIOLOGY, Issue 7 2009
A. Heenan
To determine whether enhancing the survival of new recruits is a sensible target for the restorative management of depleted coral-reef fish populations, settlement-stage ambon damsel fish Pomacentrus amboinensis were captured, tagged and then either released immediately onto small artificial reefs or held in aquaria for 1 week prior to release. Holding conditions were varied to determine whether they affected survival of fish: half the fish were held in bare tanks (non-enriched) and the other half in tanks containing coral and sand (enriched). Holding fish for this short period had a significantly positive effect on survivorship relative to the settlement-stage treatment group that were released immediately. The enrichment of holding conditions made no appreciable difference on the survival of fish once released onto the reef. It did, however, have a positive effect on the survival of fish while in captivity, thus supporting the case for the provision of simple environmental enrichment in fish husbandry. Collecting and holding settlement-stage fish for at least a week before release appear to increase the short-term survival of released fish; whether it is an effective method for longer-term enhancement of locally depleted coral-reef fish populations will require further study. [source]

Declines in the abundance of Chaetodon butterflyfishes following extensive coral depletion

JOURNAL OF FISH BIOLOGY, Issue 5 2006
M. S. Pratchett
This study documented temporal variation in the abundance of butterflyfishes (Chaetodontidae) at Trunk Reef, on the central Great Barrier Reef, Australia, from May 2000 to March 2005. During this period, live coral cover declined by >90%, mostly due to severe coral bleaching. There were no short-term changes (within 4 months) in the abundance of butterflyfishes following initial declines in live coral cover. Surveys conducted in 2005, however, revealed significant declines in the abundance of Chaetodon baronessa, Chaetodon lunulatus, Chaetodon trifascialis, Chaetodon plebeius and Chaetodon rainfordi, all of which are obligate hard-coral feeders. In contrast, there was no significant change in the abundance of Chaetodon auriga, Chaetodon aureofasciatus, Chaetodon citrinellus, Chaetodon melannotus or Chaetodon vagabundus, which are much less reliant on scleractinian coral for food. Clearly, extensive coral depletion, such as that caused by severe coral bleaching, can have a major effect on the abundance of butterflyfishes. Specific responses of butterflyfishes varied according to their reliance on hard corals for food and their ability to utilize alternate prey types. [source]