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Active Biomass (active + biomass)
Selected AbstractsUse of monoclonal antibodies to quantify the dynamics of ,-galactosidase and endo-1,4-,-glucanase production by Trichoderma hamatum during saprotrophic growth and sporulation in peatENVIRONMENTAL MICROBIOLOGY, Issue 5 2005Christopher R. Thornton Summary Trichoderma species are ubiquitous soil and peat-borne saprotrophs that have received enormous scientific interest as biocontrol agents of plant diseases caused by destructive root pathogens. Mechanisms of biocontrol such as antibiosis and hyperparasitism are well documented and the biochemistry and molecular genetics of these processes defined. An aspect of biocontrol that has received little attention is the ability of Trichoderma species to compete for nutrients in their natural environments. Trichoderma species are efficient producers of polysaccharide-degrading enzymes that enable them to colonize organic matter thereby preventing the saprotrophic spread of plant pathogens. This study details the use of monoclonal antibodies (mAbs) to quantify the production of two enzymes implicated in the saprotrophic growth of Trichoderma species in peat. Using mAbs specific to the hemicellulase enzyme ,-galactosidase (AGL) and the cellulase enzyme endo-1,4-,-glucanase (EG), the relationship between the saprotrophic growth dynamics of a biocontrol strain of Trichoderma hamatum and the concomitant production of these enzymes in peat-based microcosms was studied. Enzyme activity assays and enzyme protein concentrations derived by enzyme-linked immunosorbent assay (ELISA) established the precision and sensitivity of mAb-based assays in quantifying enzyme production during active growth of the fungus. Trends in enzyme activities and protein concentrations were similar for both enzymes, during a 21-day sampling period in which active growth and sporulation of the fungus in peat was quantified using an independent mAb-based assay. There was a sharp increase in active biomass of T. hamatum 3 days after inoculation of microcosms with phialoconidia. After 3 days there was a rapid decline in active biomass which coincided with sporulation of the fungus. A similar trend was witnessed with EG activities and concentrations. This showed that EG production related directly to active growth of the fungus. The trend was not found, however, with AGL. There was a rapid increase in enzyme activities and protein concentrations on day 3, after which they remained static. The reason for the maintenance of elevated AGL probably resulted from secretion of the enzyme from conidia and chlamydospores. ELISA, immunofluoresence and immunogold electron microscopy studies of these cells showed that the enzyme is localized within the cytoplasm and is secreted extracellularly into the surrounding environment. It is postulated that release of oligosaccharides from polymeric hemicellulose by the constitutive spore-bound enzyme leads to AGL induction and could act as an environmental cue for spore germination. [source] Seasonal variation in rates of methane production from peat of various botanical origins: effects of temperature and substrate qualityFEMS MICROBIOLOGY ECOLOGY, Issue 3 2000Inger Bergman Abstract The methane produced in peat soils can vary over the growing season due to variations in the supply of available substrate, the activity of the microbial community or changes in temperature. Our aim was to study how these factors regulate the methane production over the season from five different peat types of different botanical origin. Peat samples were collected on seven occasions between June and September. After each sampling, the peat soils were incubated at five different temperatures (7, 10, 15, 20 and 25°C) without added substrate, or at 20°C with added substrate (glucose, or H2/CO2, or starch). Rates of methane production averaged over the season differed significantly (P<0.05, R2=0.76) among the five peat types, the minerotrophic lawn producing the highest rates, and the hummock peat producing the lowest. The seasonal average Q10 values for each plant community varied between 4.6 and 9.2, the highest value being associated with the ombrotrophic lawn and the lowest value with the mud-bottom plant community. For the unamended peat samples, the rates of methane production from each plant community varied significantly (P<0.05) over the season. This implies that the quality of organic matter, in combination with changes in temperature, explains the seasonal variation in methane production. However, addition of saturating amounts of glucose, H2/CO2 or starch at 20°C significantly reduced the seasonal variation (P<0.05) in methane production in peat from the minerotrophic lawn, wet carpet and mud-bottom plant communities. This suggests that substrate supply (e.g. root exudates) for the micro-organisms also varied over the season at these sites. Seasonal variation in methane production rates was apparent in peat from the hummock and ombrotrophic lawn plant communities even after addition of substrates, suggesting that the active biomass of the anaerobic microbial populations at these sites was regulated by other factors than the ones studied. [source] Effect of the biomass in the modelling and simulation of the biofiltration of hydrogen sulphide: simulation and experimental validationJOURNAL OF CHEMICAL TECHNOLOGY & BIOTECHNOLOGY, Issue 10 2010Javier Silva Abstract BACKGROUND: Several models have been developed to simulate the decay of pollutants concentration along the biofilter and to predict its performance. Despite the evidence, it is common that most models ignore the effect of variable biomass along the biofilter. An equation that represents the variable amount of active biomass along the column was included in the modelling of a biotrickling filter; it was obtained by measuring the active biomass at different heights. Validation of the model was carried out using experimental data obtained at different H2S loads. RESULTS: The simulation considering the expression for variable active biomass along the column shows better correlation with experimental results. With the diffusion coefficient that shows the best fit with the experimental results; 1.35 × 10,9 m2 s,1, the value of the Thiele module is 2 × 10,3, indicating that biooxidation of H2S is controlled by mass transfer. CONCLUSIONS: A better correlation between experimental results and model prediction is obtained when the expression for variable active biomass along the column is considered in the modelling. Copyright © 2010 Society of Chemical Industry [source] Hydrogen peroxide concentration measured in cultivation substrates during growth and fruiting of the mushrooms Agaricus bisporus and Pleurotus spp.JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE, Issue 7 2007Jean-Michel Savoie Abstract Hydrogen peroxide is suspected of being highly implicated in mushroom nutrition and in substrate bleaching during cultivation. The parameters for measuring H2O2 in compost samples were examined and the methodology was applied to samples from both compost colonized by cultivars and wild isolates of Agaricus bisporus, and wheat straw or coffee pulp colonized by Pleurotus spp. Laccase and peroxidase activities were also measured. H2O2 concentration measured after heating at 80 °C for inactivating laccases and peroxidases was probably both H2O2 pre-existing in the compost and H2O2 generated from quinones and active oxygen species. This potential H2O2 concentration increased during the vegetative growth for all the strains, in agreement with a direct relationship between H2O2 concentration and active biomass of A. bisporus or Pleurotus spp. in their cultivation substrates. Correlations were observed between H2O2 concentration and manganese peroxidase activity in cultivation substrates at the stage of primordia formation. At this stage of development, H2O2 generation via biotic or abiotic mechanisms should be an important physiological trait of mushrooms. Copyright © 2007 Society of Chemical Industry [source] | |||||||||||||