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Continuous Habitat (continuous + habitat)
Selected AbstractsIs the matrix a sea?ECOLOGICAL ENTOMOLOGY, Issue 1 2005Habitat specificity in a naturally fragmented landscape Abstract., 1. Metapopulation and island biogeography theory assume that landscapes consist of habitat patches set in a matrix of non-habitat. If only a small proportion of species conform to the patch,matrix assumptions then metapopulation theory may only describe special cases rather than being of more general ecological importance. 2. As an initial step towards understanding the prevalence of metapopulation dynamics in a naturally fragmented landscape, the distribution of beetle species in three replicates of three habitat types was examined, including rainforest and eucalypt forest (the habitat patches), and buttongrass sedgeland (the matrix), in south-west Tasmania, Australia. 3. Ordination methods indicated that the buttongrass fauna was extremely divergent from the fauna of forested habitats. Permutation tests showed that the abundance of 13 of 17 commonly captured species varied significantly among habitats, with eight species confined to eucalypts or rainforest, and three species found only in buttongrass. Approximately 60% of species were confined to forested habitat implying that metapopulation theory has the potential to be very important in the forest,buttongrass landscape. 4. Although floristically the rainforest and eucalypts were extremely distinct, the beetle faunas from eucalypts and rainforests overlapped substantially. Therefore rainforest patches connected by eucalypt forest represent continuous habitat for most species. 5. Other studies report a wide range of values for the proportion of patch-specific species in fragmented landscapes. Understanding the environmental or historical conditions under which a high proportion of species become patch specialists would help to identify where spatial dynamic theory may be especially applicable, and where habitat loss and fragmentation poses the greatest threat to biodiversity. [source] Non-optimal animal movement in human-altered landscapesFUNCTIONAL ECOLOGY, Issue 6 2007LENORE FAHRIG Summary 1I synthesize the understanding of the relationship between landscape structure and animal movement in human-modified landscapes. 2The variety of landscape structures is first classified into four categories: continuous habitat, patchy habitat with high-quality matrix, patchy habitat with low-quality matrix, and patchy, ephemeral habitat. Using this simplification I group the range of evolved movement parameters into four categories or movement types. I then discuss how these movement types interact with current human-caused landscape changes, and how this often results in non-optimal movement. 3From this synthesis I develop a hypothesis that predicts the relative importance of the different population-level consequences of these non-optimal movements, for the four movement types. 4Populations of species that have inhabited landscapes with high habitat cover or patchy landscapes with low-risk matrix should have evolved low boundary responses and moderate to high movement probabilities. These species are predicted to be highly susceptible to increased movement mortality resulting from habitat loss and reduced matrix quality. 5In contrast, populations of species that evolved in patchy landscapes with high-risk matrix or dynamic patchy landscapes are predicted to be highly susceptible to decreased immigration and colonization success, due to the increasing patch isolation that results from habitat loss. 6Finally, I discuss three implications of this synthesis: (i) ,least cost path' analysis should not be used for land management decisions without data on actual movement paths and movement risks in the landscape; (ii) ,dispersal ability' is not simply an attribute of a species, but varies strongly with landscape structure such that the relative rankings of species' dispersal abilities can change following landscape alteration; and (iii) the assumption that more mobile species are more resilient to human-caused landscape change is not generally true, but depends on the structure of the landscape where the species evolved. [source] The tails of two geckos tell the story of dispersal in a fragmented landscapeMOLECULAR ECOLOGY, Issue 16 2007KENDI F. DAVIES The fragmentation of habitat is a major cause of biodiversity loss. However, while numerous studies have suggested that reducing the size of populations and isolating them on fragments leads ultimately to the extinction of a species (small isolated populations are extinction prone), the evidence has been rather conjectural. This is because dispersal is so difficult to measure and isolation difficult to confirm. In past studies, evidence that populations become small and isolated on fragments, leading to declines, has relied on spatial patterns of distribution and abundance. Thus, a species not trapped in the matrix in which fragments are embedded might be assumed isolated on fragments, and if low in abundance on fragments compared to continuous habitat is assumed to have declined on fragments due to this isolation. However, without accurately measuring the degree of isolation, it is difficult to distinguish the role of isolation from other important causes of population decline that are correlated with fragment and population size, such as habitat degradation. Developments in molecular techniques and statistical methods now make it possible to measure isolation. Refreshingly, in this issue Hoehn et al. analyse microsatellite DNA with a suite of statistical methods to show convincingly that a declining species of gecko suffers from greater isolation on habitat fragments than a contrasting gecko that is able to disperse between fragments and hence persist in the severely fragmented wheatbelt of Western Australia. [source] Does habitat fragmentation reduce fitness and adaptability?MOLECULAR ECOLOGY, Issue 13 2007A case study of the common frog (Rana temporaria) Abstract Studies examining the effects of anthropogenic habitat fragmentation on both neutral and adaptive genetic variability are still scarce. We compared tadpole fitness-related traits (viz. survival probability and body size) among populations of the common frog (Rana temporaria) from fragmented (F) and continuous (C) habitats that differed significantly in population sizes (C > F) and genetic diversity (C > F) in neutral genetic markers. Using data from common garden experiments, we found a significant positive relationship between the mean values of the fitness related traits and the amount of microsatellite variation in a given population. While genetic differentiation in neutral marker loci (FST) tended to be more pronounced in the fragmented than in the continuous habitat, genetic differentiation in quantitative traits (QST) exceeded that in neutral marker traits in the continuous habitat (i.e. QST > FST), but not in the fragmented habitat (i.e. QST , FST). These results suggest that the impact of random genetic drift relative to natural selection was higher in the fragmented landscape where populations were small, and had lower genetic diversity and fitness as compared to populations in the more continuous landscape. The findings highlight the potential importance of habitat fragmentation in impairing future adaptive potential of natural populations. [source] Dispersal and phylogeography of the agamid lizard Amphibolurus nobbi in fragmented and continuous habitatMOLECULAR ECOLOGY, Issue 6 2005D. A. DRISCOLL Abstract Approximately 90% of native vegetation has been cleared for agriculture in central New South Wales, Australia. Habitat loss has reduced and fragmented populations of the agamid lizard Amphibolurus nobbi. We compared genetic structure of populations of this species in an unmodified landscape with those from small nature reserves and linear remnants in farming areas. We ask: Is there evidence for reduced dispersal and population fragmentation among farm populations? Using 2008 bp mtDNA sequences and allozyme electrophoresis, we found that small populations in farming areas had as much genetic variation as populations in nature reserves. Application of nested clade analysis (NCA) indicated isolation-by-distance effects among populations from uncleared areas, but not among populations within farming locations. The genetic evidence therefore implied a high level of migration in the cleared landscapes. High dispersal after fragmentation may have resulted from either a burst of movement at the time of land clearing with dragons from many sources finding refuge in a few remnants, or from ongoing rapid dispersal through unsuitable habitat. A phylogeny based on mtDNA revealed that A. nobbi populations in the study area are deeply divided into two reciprocally monophyletic groups. Although we did not sample the entire species range, one of these evolutionarily significant units was only detected in remnant vegetation in the agricultural landscape. Therefore, a substantial subclade of this species may be vulnerable to extinction. Our findings emphasize that local populations of widespread species can harbour important intraspecific genetic diversity, supporting the case for maintaining widespread species throughout production landscapes. [source] Microsatellite variation and population structure in a declining Australian Hylid Litoria aureaMOLECULAR ECOLOGY, Issue 7 2004Emma L. Burns Abstract The green and golden bell frog (Litoria aurea) was once a common Australian Hylid. Today, many populations are small and fragmented as a result of dramatic declines in distribution and abundance. We undertook a large-scale assessment of genetic structure and diversity in L. aurea using four species-specific microsatellite markers. Twenty-one locations were sampled from throughout the species range covering 1000 km of the east coast of Australia. Levels of allelic diversity and heterozygosity were high (uncorrected mean alleles/locus and HE were 4.8,8.8 and 0.43,0.8, respectively) compared to other amphibian species and significant differences among sampled sites were recorded. Despite recent population declines, no sites displayed a genetic signature indicative of a population bottleneck. Significant genetic structuring (overall FST 0.172) was detected throughout the species range, but was relatively low compared to previous amphibian studies employing microsatellites. In addition we found that some areas sampled within continuous habitat showed evidence of weak genetic structuring (data subset FST 0.034). We conclude that maintaining areas of continuous habitat is critical to the conservation of the species and argue that population recovery and/or persistence in all areas sampled is possible if appropriate protection and management are afforded. [source] Landscape scale genetic effects of habitat fragmentation on a high gene flow species: Speyeria idalia (Nymphalidae)MOLECULAR ECOLOGY, Issue 1 2003Barry L. Williams Abstract Detection of the genetic effects of recent habitat fragmentation in natural populations can be a difficult task, especially for high gene flow species. Previous analyses of mitochondrial DNA data from across the current range of Speyeria idalia indicated that the species exhibited high levels of gene flow among populations, with the exception of an isolated population in the eastern portion of its range. However, some populations are found on isolated habitat patches, which were recently separated from one another by large expanses of uninhabitable terrain, in the form of row crop agriculture. The goal of this study was to compare levels of genetic differentiation and diversity among populations found in relatively continuous habitat to populations in both recently and historically isolated habitat. Four microsatellite loci were used to genotype over 300 individuals from five populations in continuous habitat, five populations in recently fragmented habitat, and one historically isolated population. Results from the historically isolated population were concordant with previous analyses and suggest significant differentiation. Also, microsatellite data were consistent with the genetic effects of habitat fragmentation for the recently isolated populations, in the form of increased differentiation and decreased genetic diversity when compared to nonfragmented populations. These results suggest that given the appropriate control populations, microsatellite markers can be used to detect the effects of recent habitat fragmentation in natural populations, even at a large geographical scale in high gene flow species. [source] Bottlenecks, drift and differentiation: the population structure and demographic history of sika deer (Cervus nippon) in the Japanese archipelagoMOLECULAR ECOLOGY, Issue 6 2001Simon J. Goodman Abstract We assessed genetic differentiation and diversity in 14 populations of sika deer (Cervus nippon) from Japan and four populations of sika deer introduced to the UK, using nine microsatellite loci. We observed extreme levels of differentiation and significant differences in diversity between populations. Our results do not support morphological subspecies designations, but are consistent with previous mitochondrial DNA analyses which suggest the existence of two genetically distinct lineages of sika deer in Japan. The source of sika introduced to the UK was identified as Kyushu. The underlying structure of Japanese populations probably derives from drift in separate glacial refugia and male dispersal limited by distance. This structure has been perturbed by bottlenecks and habitat fragmentation, resulting from human activity from the mid-nineteenth century. Most current genetic differentiation and differences in diversity among populations probably result from recent drift. Coalescent model analysis suggests sika on each of the main Japanese islands have experienced different recent population histories. Hokkaido, which has large areas of continuous habitat, has maintained high levels of gene flow. In Honshu the population is highly fragmented and is likely to have been evolving by drift alone. In Kyushu there has been a balance between gene flow and drift but all the populations have experienced high levels of drift. Habitat fragment size was not significantly associated with genetic diversity in populations but there was a significant correlation between habitat fragment size and effective population size. [source] Phylogeography and population structure of an ecotonal marsupial, Bettongia tropica, determined using mtDNA and microsatellitesMOLECULAR ECOLOGY, Issue 12 2000L. C. Pope Abstract The northern bettong, Bettongia tropica, is an endangered species of Potoroidae with a restricted distribution in the wet tropics of north Queensland, Australia. The species is only found within a thin strip of sclerophyll forest along the western margin of rainforest. This tight association with rainforest boundaries is predicted to have resulted in population isolation as rainforest contracted during the Pleistocene, though some have proposed that the northern bettong was not present in the wet tropics until the late Pleistocene. The dispersal ability of the species, and of the family, is not known. This study examined gene flow among populations within areas of continuous habitat complemented by a broader analysis of phylogeography. Individuals trapped at each of the four known regions (one region was subsampled at three different sites), were sequenced for 547 base pairs of the mitochondrial DNA (mtDNA) control region and typed for seven microsatellite loci. The mtDNA phylogeny showed congruence with a biogeographical hypothesis, a relatively deep split suggesting historical isolation in separate northern and southern refugia. The two divergent clades were both present within the Lamb Range, indicating an expansion from these refuges and subsequent admixture at one site. mtDNA allele frequencies indicated relatively limited gene flow within the Lamb Range over distances as short as nine km. Tests of population divergence using microsatellites (FST and assignment tests) strongly supported this result. A molecular signal indicative of a recent bottleneck was unexpectedly detected in one of the Lamb Range subpopulations. This lead us to examine the behaviour of the statistics used in this bottleneck test under a linear stepping-stone model with varying migration rates. We found that it may be more difficult to detect molecular signatures for recent bottlenecks under conditions of very low migration rates than for isolated populations and, conversely, that ,false' bottleneck signatures may be observed at higher migration rates. The Lamb Range FST estimate clearly fell within the category of potentially ,false' bottleneck signals. Despite relatively limited gene flow, evidence for asymmetric dispersal suggests more complicated population dynamics than a simple linear stepping-stone model. [source] Fine-scale genetic structure overrides macro-scale structure in a marine snail: nonrandom recruitment, demographic events or selection?BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 1 2007SÓNIA C. S. ANDRADE The planktotrophic littorinid species Littoraria flava occupies a continuous habitat on rocky shores close to brackish and freshwater sources. Previous studies of this species have shown a moderate genetic structure over a broad geographical scale, with high deviations from Hardy,Weinberg expectations in many allozymic loci. Local-scale subdivision in marine species with a long dispersal phase is unexpected, but occasionally found. Using a horizontal transect at three locations, we examined whether microscale and short-term subdivision also occurred in L. flava populations and, if so, whether this could explain the Hardy,Weinberg deviations. Littoraria flava showed even more structuring on a microgeographical scale (4,300 m) than on a large-scale (> 200 km). The Ewens,Watterson neutrality test showed that 18% of the tests deviated significantly from the neutrality model. A homogeneity test for each locus across samples within transects showed homogeneous and high FIS values in many loci. These results and the apparent genetic patchiness within transects suggest that asynchronous spawning associated with recurrent colonizations in L. flava can explain the local differentiation without a recognizable pattern. In addition, there could be a balance between these factors and diversifying selection acting on different loci at different times and localities. © 2007 The Linnean Society of London, Biological Journal of the Linnean Society, 2007, 91, 23,36. [source] | ||||||||||