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Complementary Approaches (complementary + approach)
Selected AbstractsMolecular Neuropathology of Temporal Lobe Epilepsy: Complementary Approaches in Animal Models and Human Disease TissueEPILEPSIA, Issue 2007Michael Majores Summary:, Patients with temporal lobe epilepsies (TLE) frequently develop pharmacoresistance to antiepileptic treatment. In individuals with drug-refractory TLE, neurosurgical removal of the epileptogenic focus provides a therapy option with high potential for seizure control. Biopsy specimens from TLE patients constitute unique tissue resources to gain insights in neuropathological and molecular alterations involved in human TLE. Compared to human tissue specimens in most neurological diseases, where only autopsy material is available, the bioptic tissue samples from pharmacoresistant TLE patients open rather exceptional preconditions for molecular biological, electrophysiological as well as biochemical experimental approaches in human brain tissue, which cannot be carried out in postmortem material. Pathological changes in human TLE tissue are multiple and relate to structural and cellular reorganization of the hippocampal formation, selective neurodegeneration, and acquired changes of expression and distribution of neurotransmitter receptors and ion channels, underlying modified neuronal excitability. Nevertheless, human TLE tissue specimens have some limitations. For obvious reasons, human TLE tissue samples are only available from advanced, drug-resistant stages of the disease. However, in many patients, a transient episode of status epilepticus (SE) or febrile seizures in childhood can induce multiple structural and functional alterations that after a latency period result in a chronic epileptic condition. This latency period, also referred to as epileptogenesis, cannot be studied in human TLE specimens. TLE animal models may be particularly helpful in order to shed characterize new molecular pathomechanisms related to epileptogenesis and open novel therapeutic strategies for TLE. Here, we will discuss experimental approaches to unravel molecular,neuropathological aspects of TLE and highlight characteristics and potential of molecular studies in human and/or experimental TLE. [source] On-line dynamic security assessment to mitigate the risk of blackout in the Italian power systemEUROPEAN TRANSACTIONS ON ELECTRICAL POWER, Issue 8 2008Diego Cirio Abstract This paper provides a comprehensive survey of the major initiatives and research projects recently carried out by the Italian system operator, Cesi Ricerca, and Universities on power system monitoring, defense, and security assessment. The technological and methodological features of an advanced wide area measurement system (WAMS) are described and the main aspects of an adaptive system for event-based automatic load shedding are presented. Then preventive and corrective security assessment, with particular emphasis to dynamic security assessment,DSA, is introduced. Results from an EU project, where the Italian power system served as a test site for on-line experimentation, are reported. Considering the need for very fast assessment by stability indices, a complementary approach to the above "conventional" DSA, currently under way, is described in further detail. The methodology relies on a correlation model relating significant power system measurements with local loadability margins. Results of some tests on the Italian power system are presented and discussed. Copyright © 2008 John Wiley & Sons, Ltd. [source] Couple Dynamics of Change-Resistant Smoking: Toward a Family Consultation Model,FAMILY PROCESS, Issue 1 2001Michael J. Rohrbaugh Ph.D. Smoking is North America's leading cause of preventable morbidity and mortality. Although effective cessation treatments exist, their overall effect is modest, and they rarely reach the high-risk, health-compromised smokers who need them most. Surprisingly, despite evidence that marital relationship variables predict the success of cessation efforts, family systems ideas have had little impact on current intervention research. We review and critique the cessation literature from a systemic viewpoint, illustrate two couple-interaction patterns relevant to the maintenance of high-risk smoking, and outline a family-consultation (FAMCON) intervention for couples in which at least one partner continues to smoke despite having heart or lung disease. Taking into account ironic processes and symptom-system fit, FAMCON focuses on the immediate social context of smoking, aiming to interrupt well-intentioned "solutions" that ironically feed back to keep smoking going, and to help clients realign important relationships in ways not organized around tobacco usage. Currently in its pilot-testing phase, FAMCON is an adjunctive, complementary approach designed to include collaboration with primary-care physicians and to make smokers more amenable to other, evidence-based cessation strategies. [source] Reactive Imprint Lithography: Combined Topographical Patterning and Chemical Surface Functionalization of Polystyrene- block -poly(tert -butyl acrylate) FilmsADVANCED FUNCTIONAL MATERIALS, Issue 3 2010Joost Duvigneau Abstract Here, reactive imprint lithography (RIL) is introduced as a new, one-step lithographic tool for the fabrication of large-area topographically patterned, chemically activated polymer platforms. Films of polystyrene- block -poly(tert -butyl acrylate) (PS- b -PtBA) are imprinted with PDMS master stamps at temperatures above the corresponding glass transition and chemical deprotection temperatures to yield structured films with exposed carboxylic acid and anhydride groups. Faithful pattern transfer is confirmed by AFM analyses. Transmission-mode FTIR spectra shows a conversion of over 95% of the tert -butyl ester groups after RIL at 230,°C for 5 minutes and a significantly reduced conversion to anhydride compared to thermolysis of neat films with free surfaces in air or nitrogen. An enrichment of the surface layer in PS is detected by angle-resolved X-ray photoelectron spectroscopy (XPS). In order to demonstrate application potentials of the activated platforms, a 7,nm,±,1,nm thick NH2 -terminated PEG layer (grafting density of 0.9 chains nm,2) is covalently grafted to RIL-activated substrates. This layer reduces the non-specific adsorption (NSA) of bovine serum albumin by 95% to a residual mass coverage of 9.1,±,2.9,ng cm,2. As shown by these examples, RIL comprises an attractive complementary approach to produce bio-reactive polymer surfaces with topographic patterns in a one-step process. [source] Solute transport in sand and chalk: a probabilistic approachHYDROLOGICAL PROCESSES, Issue 5 2006E. Carlier Abstract A probabilistic approach is used to simulate particle tracking for two types of porous medium. The first is sand grains with a single intergranular porosity. Particle tracking is carried out by advection and dispersion. The second is chalk granulates with intergranular and matrix porosities. Sorption can occur with advection and dispersion during particle tracking. Particle tracking is modelled as the sum of elementary steps with independent random variables in the sand medium. An exponential distribution is obtained for each elementary step and shows that the whole process is Markovian. A Gamma distribution or probability density function is then deduced. The relationships between dispersivity and the elementary step are given using the central limit theorem. Particle tracking in the chalky medium is a non-Markovian process. The probability density function depends on a power of the distance. Experimental simulations by dye tracer tests on a column have been performed for different distances and discharges. The probabilistic approach computations are in good agreement with the experimental data. The probabilistic computation seems an interesting and complementary approach to simulate transfer phenomena in porous media with respect to the traditional numerical methods. Copyright © 2006 John Wiley & Sons, Ltd. [source] Methylation profile in tumor and sputum samples of lung cancer patients detected by spiral computed tomography: A nested case,control studyINTERNATIONAL JOURNAL OF CANCER, Issue 5 2006Rosalia Cirincione Abstract We evaluated the aberrant promoter methylation profile of a panel of 3 genes in DNA from tumor and sputum samples, in view of a complementary approach to spiral computed tomography (CT) for early diagnosis of lung cancer. The aberrant promoter methylation of RAR,2, p16INK4A and RASSF1A genes was evaluated by methylation-specific PCR in tumor samples of 29 CT-detected lung cancer patients, of which 18 had tumor-sputum pairs available for the analysis, and in the sputum samples from 112 cancer-free heavy smokers enrolled in a spiral CT trial. In tumor samples from 29 spiral CT-detected patients, promoter hypermethylation was identified in 19/29 (65.5%) cases for RAR,2, 12/29 (41.4%) for p16INK4A and 15/29 (51.7%) for RASSF1A. Twenty-three of twenty-nine (79.3%) samples of the tumors exhibited methylation in at least 1 gene. In the sputum samples of 18 patients, methylation was detected in 8/18 (44.4%) for RAR,2 and 1/18 (5%) for both RASSF1A and p16INK4A. At least 1 gene was methylated in 9/18 (50%) sputum samples. Promoter hypermethylation in sputum from 112 cancer-free smokers was observed in 58/112 (51.7%) for RAR,2 and 20/112 (17.8%) for p16, whereas methylation of the RASSF1A gene was found in only 1/112 (0.9%) sputum sample. Our study indicates that a high frequency of hypermethylation for RAR,2, p16INK4A and RASSF1A promoters is present in spiral CT-detected tumors, whereas promoter hypermethylation of this panel of genes in uninduced sputum has a limited diagnostic value in early lung cancer detection. © 2005 Wiley-Liss, Inc. [source] Pareto-Optimal Predictor Composite Formation: A complementary approach to alleviating the selection quality/adverse impact dilemmaINTERNATIONAL JOURNAL OF SELECTION AND ASSESSMENT, Issue 3 2008Paul R. Sackett In our rejoinder to the comments of Kehoe (this issue) and Potosky, Bobko and Roth (this issue) we emphasize that our proposal on Pareto-optimal predictor composite formation is a complementary and not a competitive alternative for reducing the tension between selection quality and adverse impact. Our work addresses the decisions to be made once one has decided to use a predictor composite. We also further clarify the basic features of Pareto-optimal tradeoffs and Pareto-optimal composites within the context of personnel selection. In particular, we indicate that Pareto-optimal tradeoffs between validity and adverse impact emerge because these goals are different and not because of any dualism between them. [source] Beyond corporate codes of conduct: Work organization and labour standards at Nike's suppliersINTERNATIONAL LABOUR REVIEW, Issue 1-2 2007Richard LOCKE What role can corporate codes of conduct play in monitoring compliance with international labour standards and improving working conditions in global supply chains? Addressing this question, the authors first summarize the results of research on factory audits of working conditions in 800 of Nike's suppliers in 51 countries and two intensive case studies. They then discuss how the codes fit into the broader array of institutions, policies and practices aimed at regulating and improving working conditions, suggesting an evolutionary and complementary approach to regulating working conditions in global supply chains. They outline additional research and institutional innovations needed to test these ideas. [source] Domestic and Foreign Earnings, Stock Return Variability, and the Impact of Investor SophisticationJOURNAL OF ACCOUNTING RESEARCH, Issue 3 2005JEFFREY L. CALLEN ABSTRACT We examine the importance of foreign earnings relative to domestic earnings for a sample of U.S. multinationals using variance decomposition. Our methodology represents an alternative and complementary approach over the prior literature, which is based on traditional regressions and earnings response coefficients. We document that domestic earnings are more important in explaining the variance of unexpected returns than are foreign earnings and that the relative importance of domestic earnings is a decreasing function of investor sophistication. Last, we classify institutional investors as either short- or long-term oriented following Bushee [1998]. We find that the variance contribution of foreign earnings increases with the level of investment by long-term investors. In contrast, there is no significant relation between the degree of ownership by short-term (or transient) investors and the variance contribution of domestic and foreign earnings. Overall, our results are consistent with Thomas's [1999] finding that investors on average underestimate the persistence of foreign earnings. [source] Mobile information retrieval with search results clustering: Prototypes and evaluationsJOURNAL OF THE AMERICAN SOCIETY FOR INFORMATION SCIENCE AND TECHNOLOGY, Issue 5 2009Claudio Carpineto Web searches from mobile devices such as PDAs and cell phones are becoming increasingly popular. However, the traditional list-based search interface paradigm does not scale well to mobile devices due to their inherent limitations. In this article, we investigate the application of search results clustering, used with some success for desktop computer searches, to the mobile scenario. Building on CREDO (Conceptual Reorganization of Documents), a Web clustering engine based on concept lattices, we present its mobile versions Credino and SmartCREDO, for PDAs and cell phones, respectively. Next, we evaluate the retrieval performance of the three prototype systems. We measure the effectiveness of their clustered results compared to a ranked list of results on a subtopic retrieval task, by means of the device-independent notion of subtopic reach time together with a reusable test collection built from Wikipedia ambiguous entries. Then, we make a cross-comparison of methods (i.e., clustering and ranked list) and devices (i.e., desktop, PDA, and cell phone), using an interactive information-finding task performed by external participants. The main finding is that clustering engines are a viable complementary approach to plain search engines both for desktop and mobile searches especially, but not only, for multitopic informational queries. [source] New Escherichia coli outer membrane proteins identified through prediction and experimental verificationPROTEIN SCIENCE, Issue 4 2006Paola Marani Abstract Many new Escherichia coli outer membrane proteins have recently been identified by proteomics techniques. However, poorly expressed proteins and proteins expressed only under certain conditions may escape detection when wild-type cells are grown under standard conditions. Here, we have taken a complementary approach where candidate outer membrane proteins have been identified by bioinformatics prediction, cloned and overexpressed, and finally localized by cell fractionation experiments. Out of eight predicted outer membrane proteins, we have confirmed the outer membrane localization for five,YftM, YaiO, YfaZ, CsgF, and YliI,and also provide preliminary data indicating that a sixth,YfaL,may be an outer membrane autotransporter. [source] Comprehensive plasma-screening for known and unknown substances in doping controlsRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 8 2010Andreas Thomas Occasionally, doping analysis has been recognized as a competitive challenge between cheating sportsmen and the analytical capabilities of testing laboratories. Both have made immense progress during the last decades, but obviously the athletes have the questionable benefit of frequently being able to switch to new, unknown and untested compounds to enhance their performance. Thus, as analytical counteraction and for effective drug testing, a complementary approach to classical targeted methods is required in order to implement a comprehensive screening procedure for known and unknown xenobiotics. The present study provides a new analytical strategy to circumvent the targeted character of classical doping controls without losing the required sensitivity and specificity. Using 50,µL of plasma only, the method potentially identifies illicit drugs in low ng/mL concentrations. Plasma provides the biological fluid with the circulating, unmodified xenobiotics; thus the identification of unknown compounds is facilitated. After a simple protein precipitation, liquid chromatographic separation and subsequent detection by means of high resolution/high accuracy orbitrap mass spectrometry, the procedure enables the determination of numerous compounds from different classes prohibited by the World Anti-Doping Agency (WADA). A new hyphenated mass spectrometry technology was employed without precursor ion selection for higher collision energy dissociation (HCD) fragmentation experiments. Thus the mass spectra contained all the desired information to identify unknown substances retrospectively. The method was validated for 32 selected model compounds for qualitative purposes considering the parameters specificity, selectivity, limit of detection (<0.1,10,ng/mL), precision (9,28%), robustness, linearity, ion suppression and recovery (80,112%). In addition to the identification of unknown compounds, the plasma samples were simultaneously screened for known prohibited targets. Copyright © 2010 John Wiley & Sons, Ltd. [source] Postmarketing surveillance for human teratogenicity: A model approach,BIRTH DEFECTS RESEARCH, Issue 5 2001Christina D. Chambers Background Most congenital defects associated with prenatal exposures are notable for a pattern of major and minor malformations, rather than for a single major malformation. Thus, traditional epidemiological methods are not universally effective in identifying new teratogens. The purpose of this report is to outline a complementary approach that can be used in addition to other more established methods to provide the most comprehensive evaluation of prenatal exposures with respect to teratogenicity. Methods We describe a multicenter prospective cohort study design involving dysmorphological assessment of liveborn infants. This design uses the Organization of Teratology Information Services, a North American network of information providers who also collaborate for research purposes. Procedures for subject selection, methods for data collection, standard criteria for outcome classification, and the approach to analysis are detailed. Results The focused cohort study design allows for evaluation of a spectrum of adverse pregnancy outcomes ranging from spontaneous abortion to functional deficit. While sample sizes are typically inadequate to identify increased risks for single major malformations, the use of dysmorphological examinations to classify structural anomalies provides the unique advantage of screening for a pattern of malformation among exposed infants. Conclusions As the known human teratogens are generally associated with patterns of structural defects, it is only when studies of this type are used in combination with more traditional methods that we can achieve an acceptable level of confidence regarding the risk or safety of specific exposures during pregnancy. Teratology 64:252,261, 2001. © 2001 Wiley-Liss, Inc. [source] X-ray and 13C solid-state NMR studies of N -benzoyl-phenylalanineCHEMICAL BIOLOGY & DRUG DESIGN, Issue 4 2000M.J. Potrzebowski Abstract: A crystalline sample of N -benzoyl- dl -phenylalanine 1 and a polycrystalline sample of N -benzoyl- l -phenylalanine 2 were studied using 13C high-resolution solid-state NMR spectroscopy. The X-ray structure of the dl form was established. Sample 1 crystallizes in a monoclinic form with a P21/c space group, a = 11.338(1) Å, b = 9.185(1) Å, c = 14.096(2) Å, ,,= 107.53(3)°, V = 1400(3) Å3, Z = 4 and R = 0.053. The principal elements of the 13C chemical shift tensors ,ii for 1 and 2, selectively 13C (99%) labeled at the carboxyl groups were calculated. On the basis of 13C ,ii analysis the hydrogen bonding pattern for sample 2 was deduced. Enriched samples were used to establish the intermolecular distance between chemically equivalent nuclei for 1 and spatial proximity in heterogeneous domain for 2, employing the ODESSA pulse sequence. The consistence of the complementary approach covering X-ray data, analysis of the 13C ,ii parameters and ODESSA results is revealed. [source] Effects of Habitat Fragmentation on Effective Dispersal of Florida Scrub-JaysCONSERVATION BIOLOGY, Issue 4 2010AURÉLIE COULON Aphelocoma c,rulescens; dispersión; flujo génico; fragmentación Abstract:,Studies comparing dispersal in fragmented versus unfragmented landscapes show that habitat fragmentation alters the dispersal behavior of many species. We used two complementary approaches to explore Florida Scrub-Jay (Aphelocoma c,rulescens) dispersal in relation to landscape fragmentation. First, we compared dispersal distances of color-marked individuals in intensively monitored continuous and fragmented landscapes. Second, we estimated effective dispersal relative to the degree of fragmentation (as inferred from two landscape indexes: proportion of study site covered with Florida Scrub-Jay habitat and mean distance to nearest habitat patch within each study site) by comparing genetic isolation-by-distance regressions among 13 study sites having a range of landscape structures. Among color-banded individuals, dispersal distances were greater in fragmented versus continuous landscapes, a result consistent with other studies. Nevertheless, genetic analyses revealed that effective dispersal decreases as the proportion of habitat in the landscape decreases. These results suggest that although individual Florida Scrub-Jays may disperse farther as fragmentation increases, those that do so are less successful as breeders than those that disperse short distances. Our study highlights the importance of combining observational data with genetic inferences when evaluating the complex biological and life-history implications of dispersal. Resumen:,Estudios que comparan la dispersión en paisajes fragmentados versus no fragmentados muestran que la fragmentación del hábitat altera la conducta de dispersión de muchas especies. Utilizamos dos métodos complementarios para explorar la dispersión de Aphelocoma c,rulescens en relación con la fragmentación del paisaje. Primero, comparamos las distancias de dispersión de individuos marcados con color en paisajes continuos y fragmentados monitoreados intensivamente. Segundo, estimamos la dispersión efectiva en relación con el grado de fragmentación (inferida a partir de dos índices del paisaje: proporción del sitio de estudio cubierta con hábitat para A. c,rulescens y la distancia promedio al parche más cercano en cada sitio de estudio) mediante la comparación de regresiones de aislamiento genético por distancia entre 13 sitios de estudio con una gama de estructuras de paisaje. Entre los individuos marcados con color, las distancias de dispersión fueron mayores en los paisajes fragmentados versus los continuos, un resultado consistente con otros estudios. Sin embargo, los análisis genéticos revelaron que la dispersión efectiva decrece a medida que decrece la proporción de hábitat en el paisaje. Estos resultados sugieren que aunque individuos de A. c,rulescens pueden dispersarse más lejos a medida que incrementa la fragmentación, aquellos que lo hacen son reproductores menos exitosos que los que se dispersan a corta distancia. Nuestro estudio resalta la importancia de combinar datos observacionales con inferencias genéticas cuando se evalúan las complejas implicaciones de la dispersión sobre la biología y la historia natural. [source] Regional analysis of bedrock stream long profiles: evaluation of Hack's SL form, and formulation and assessment of an alternative (the DS form)EARTH SURFACE PROCESSES AND LANDFORMS, Issue 5 2007Geoff Goldrick Abstract The equilibrium form of the fluvial long profile has been used to elucidate a wide range of aspects of landscape history including tectonic activity in tectonic collision zones, and in continental margin and other intraplate settings, as well as other base-level changes such as due to sealevel fluctuations. The Hack SL form of the long profile, which describes a straight line on a log,normal plot of elevation (normal) versus distance (logarithmic), is the equilibrium long profile form that has been most widely used in such studies; slope,area analysis has also been used in recent years. We show that the SL form is a special case of a more general form of the equilibrium long profile (here called the DS form) that can be derived from the power relationship between stream discharge and downstream distance, and the dependence of stream incision on stream power. The DS form provides a better fit than the SL form to river long profiles in an intraplate setting in southeastern Australia experiencing low rates of denudation and mild surface uplift. We conclude that, if an a priori form of the long profile is to be used for investigations of regional landscape history, the DS form is preferable. In particular, the DS form in principle enables equilibrium steepening due to an increase in channel substrate lithological resistance (parallel shift in the DS plot) to be distinguished from disequilibrium steepening due to long profile rejuvenation (disordered outliers on the DS plot). Slope,area analysis and the slope,distance (DS) approach outlined here are complementary approaches, reflecting the close relationship between downstream distance and downstream catchment area. Copyright © 2006 John Wiley & Sons, Ltd. [source] Assessing the relationship between forest types and canopy tree beta diversity in AmazoniaECOGRAPHY, Issue 4 2010Thaise Emilio Planning of conservation priorities has often taken mapped forest types as surrogates for biological complementarity. In the Brazilian Amazon, these exercises have given equal weight to each forest type as if they were all equally distinct. Here, we examine floristic similarity between forest types to assess the reliability of vegetation maps as a surrogate for canopy tree-community composition. We analyzed floristic differences at the genus level between twelve Amazonian forest types using 1184 one-hectare inventories of large trees with three complementary approaches. First, we compared a map of floristic composition, from a uni-dimensional NMDS ordination of the inventories, with a map of coarser-level forest types commonly recognized as distinct by classification systems across Amazonia. Using Mantel and means-difference tests, we next examined the distance-decay of floristic similarity for all paired samples and for the pairs drawn from within and between twelve more finely divided forest types. Finally, we examined the degree of floristic separation of each pair of the twelve forest types using non-parametric analysis of variance. Maps of floristic composition and coarse-level forest types were highly congruent. At the finer level of classification, similarity was only slightly higher when pairs were drawn from the same versus from different forest types. This was true for all geographic distances. Nonetheless, eighty percent of the 66 paired combinations of forest types were significantly different in the unreduced genus-space and nearly half showed little or no overlap in a two-dimensional ordination. Three types were most distinct from all others: white sand, seasonally dry, and bamboo-dominated forests. Here, we show that forest types exhibit variable degrees of separation. For this reason, treating all fine-level forest types as equally distinct results in poor representation of canopy tree beta diversity. We recommend explicitly considering the degree of floristic separation between all forest types , as presented here for Amazonian flora , as a way to improve the use of this biodiversity surrogate. [source] Interaction of copper and zinc with allophane and organic matter in the B horizon of an AndosolEUROPEAN JOURNAL OF SOIL SCIENCE, Issue 2 2003C. Latrille Summary Andosols developed on basaltic material are naturally rich in metals. Organic matter and allophane, the key colloids of these soils, have a strong affinity for trace metals, but are intimately mixed so that speciation of trace metal is difficult to determine. We used three complementary approaches, namely physical fractionation, chemical extraction and potentiometric measurement, to distinguish them. Physical particle-size separations and chemical selective dissolution of allophanes and organic matter were combined to demonstrate relations between the occurrence of colloids and contents of Cu and Zn in an andic B horizon. About 22% of total soil Cu and 7% of total soil Zn were present in the < 5-,m fraction, associated with organic or amorphous mineral constituents. To support this association further, the affinity of soil colloids for Cu and Zn in a mimicked system was demonstrated. An Al-rich allophane was synthesized, and a portion of the organic matter was extracted from the clay fraction, and their reactivities towards Cu2+ or Zn2+ were studied by potentiometry. The two metallic cations displayed specific affinity towards allophane or soluble organic matter. Furthermore, the behaviour of copper and zinc in the ternary system, allophane + soluble organic matter + trace element, revealed a synergy in the surface complexation. The use of these three speciation approaches highlighted the linkage between metals and constituents, and showed how important the colloidal constituents are in the behaviour of Cu and Zn in Andosols. [source] New directions and interactions in metagenomics researchFEMS MICROBIOLOGY ECOLOGY, Issue 3 2006Naomi Ward Abstract Metagenomics, which aims to access the genomic potential of an environmental sample directly, is a burgeoning area that is generating enormous amounts of biological information. An examination of recent metagenomics literature reveals the discipline to be heading in new and interesting directions, including the investigation of the normal flora of mammals, analysis of ancient genomes, and exploration of the distribution of novel pathways. In addition, the development of new bioinformatics approaches and tools is allowing innovative mining of both existing and new data. Finally, there are indications that the integration of metagenomics with complementary approaches in microbial ecology is beginning. [source] ,Defence lignin' and hydroxycinnamyl alcohol dehydrogenase activities in wounded Eucalyptus gunniiFOREST PATHOLOGY, Issue 2 2003S. Hawkins Summary To learn more about lignin formation in response to wounding in trees, we adopted two complementary approaches: (1) microscopic and histochemical studies of the wound response in 3.5-month-old Eucalyptus gunnii plantlets and (2) biochemical investigations of hydroxycinnamyl alcohol dehydrogenase activities in wounded 6-year-old, field-grown E. gunnii trees. The first approach revealed that a barrier zone was formed in response to wounding in both ground tissues (cortex barrier and pith reaction zone) and vascular tissues. The barrier zone was barely detectable after 24 h but well-developed 7 days after wounding. Microscopic analyses indicated that the barrier zone was formed by the reinforcement of cell walls with ,lignin-like material' in both ground tissues and vascular tissue, and that, in addition, the lumen of certain xylem cells (vessels and fibres) were blocked by the deposition of polymeric phenolic material. Histochemical characterization revealed that the lignin-like material (,defence lignin') deposited in ground tissue cell walls and xylem cell blockages was poor in syringyl (S-type) lignin units and therefore differed from the usual mixed guaiacyl,syringyl (G,S) lignin unit composition of E. gunnii developmental lignin. In contrast, S-type lignin appeared to be deposited in the cell walls of immature developing secondary xylem cells at a stage when the cell walls of comparable cells from unwounded control stems contained lignin poor in syringyl units. The second approach indicated that two different types of cinnamyl alcohol dehydrogenase activity are induced, and apparently regulated differentially, in response to wounding in E. gunnii trees. Coniferyl alcohol dehydrogenase activity was induced immediately and continued to increase throughout the first 15 days of the 17-day experimental period, while sinapyl alcohol dehydrogenase activity was first detected at 8 days after wounding and continued to increase throughout the experimental period. The biological roles of the two alcohol dehydrogenase activities are discussed in relation to the formation of defence lignin versus developmental lignin in trees. Résumé Afin d'approfondir nos connaissances concernant la formation de lignine en réponse aux blessures chez les arbres, nous avons utilisé deux approches complémentaires: (1) des études microscopiques et histochimiques de la réponse à la blessure chez les plantules d'Eucalyptus gunniiâgées de 3 mois et demi, et (2) des analyses biochimiques des activités alcools hydroxycinnamyliques déshydrogénases chez les arbres âgés de 6 ans blessés au champ. L'utilization de la première approche a révélé qu'une barrière physique se forme en réponse à la blessure aux niveaux des tissus vasculaires, de la moelle, et des tissus externes au phloème. A 24 h après la blessure, cette barrière est peu développée mais elle est bien formée après 7 jours. Les analyses microscopiques et histochimiques ont indiqué que les parois cellulaires au niveau de la barrière sont renforcées par un composé semblable à la lignine (,lignin-like material'). De plus, les lumens de plusieurs cellules xylémiennes (vaisseaux et fibres) sont bouchées par le dépôt d'un composé polymérique de nature phénolique. Les caractérizations histochimiques ont indiqué que le ,lignin-like material' (lignine de défense) déposé dans les parois cellulaires de la moelle et des tissus externes au phloème, et dans les lumens des cellules xylemiennes, contient peu d'unités syringyles (type-S). En conséquence, cette ,lignine de défense' se distingue de la ,lignine de développement' typique d'E. gunnii, qui est composée d'unités guaiacyles (type-G) et d'unités syringyles (type-S). En revanche chez les plantules blessées, des unités syringyles sont déposées dans les parois des cellules immatures du xylème à un stade où les cellules comparables des plantules témoins ne contiennent que très peu d'unités syringyles. La deuxième approche a indiqué que deux activités alcools cinnamyliques déshydrogénases différentes sont induites, et régulées d'une façon différencielle, en réponse à la blessure chez les arbres d'E. gunnii. L'activité alcool coniférylique déshydrogénase est induite rapidement et continue d'augmenter pendant les 15 premiers jours de la période expérimentale de 17 jours, tandis que l'activité alcool sinapylique déshydrogénase est seulement détectée à 8 jours après la blessure et continue d'augmenter le long de la période expérimentale. Les rôles biologiques potentiels de ces deux activités alcools déshydrogénases sont discutés en relation avec la formation de la lignine de défense et avec la lignine de développement chez les arbres. Zusammenfassung Zur Untersuchung der Ligninbildung nach Verletzungen bei Bäumen wurden zwei sich ergänzende Forschungsansätze gewählt: 1. Mikroskopische und histochemische Untersuchungen der Wundreaktion an Jungpflanzen (3,5 Monate alt) von Eucalyptus gunnii und 2. Biochemische Untersuchungen der Hydroxycinnamylalkohol-Dehydrogenase-Aktivität bei verletzten, sechs Jahre alten E. gunnii -Bäumen im Freiland. Der erste Ansatz zeigte, dass eine Barrierezone als Antwort auf die Verletzung sowohl in beiden Grundgeweben (Cortex-Barriere und Reaktionszone im Mark) als auch in den Leitgeweben gebildet wird. Die Barrierezone war 24 Stunden nach der Verletzung gerade erkennbar, nach sieben Tagen war sie gut entwickelt. Die mikroskopische Untersuchung zeigte, dass die Barrierezone durch Verstärkung der Zellwände mit ,,ligninartigem Material,, im Grund- und Leitgewebe gebildet wurde, und dass zusätzlich das Lumen gewisser Xylemzellen (Gefässe und Fasern) durch Ablagerung von polymerem phenolischem Material verschlossen wurde. Die histochemische Analyse ergab, dass das ligninartige Material (,,Abwehrlignin,,), das in den Zellwänden des Grundgewebes und in den Lumina der Xylemzellen abgelagert wurde, geringe Mengen an Syringyl-(S-Typ)-Lignineinheiten enthielt und sich somit von der normalen Guaiacyl-Syringyl(G-S)-Komposition des Lignins von E. gunnii unterschied. Das S-Typ-Lignin wurde offenbar in den Zellwänden sich entwickelnder sekundärer Xylemzellen abgelagert. Diese Einlagerung erfolgte in einem Stadium, in dem die Zellwände der vergleichbaren Zellen in unverletzten Kontrollstämmen Lignin mit geringem Syringylgehalt enthielten. Der zweite Versuchsansatz zeigte, dass als Reaktion auf die Verletzung zwei verschiedene Arten von Cinnamylalkohol-Dehydrogenase-Aktivitäten induziert und offensichtlich unterschiedlich reguliert werden. Die Aktivität der Coniferyl-Alkohol-Dehydrogenase wurde sofort induziert und sie nahm während 15 Tagen der 17tägigen Versuchsperiode stetig zu, während die Aktivität der Sinapyl-Dehydrogenase erstmals 8 Tage nach der Verletzung nachweisbar war und dann während der gesamten Versuchsperiode anstieg. Die biologische Bedeutung der beiden Alkoholdehydrogenase-Aktivitäten werden in Bezug auf die Bildung von Abwehr-Lignin im Vergleich zur normalen Ligninbildung in Bäumen diskutiert. [source] The European carbon balance.GLOBAL CHANGE BIOLOGY, Issue 5 2010Part 3: forests Abstract We present a new synthesis, based on a suite of complementary approaches, of the primary production and carbon sink in forests of the 25 member states of the European Union (EU-25) during 1990,2005. Upscaled terrestrial observations and model-based approaches agree within 25% on the mean net primary production (NPP) of forests, i.e. 520±75 g C m,2 yr,1 over a forest area of 1.32 × 106 km2 to 1.55 × 106 km2 (EU-25). New estimates of the mean long-term carbon forest sink (net biome production, NBP) of EU-25 forests amounts 75±20 g C m,2 yr,1. The ratio of NBP to NPP is 0.15±0.05. Estimates of the fate of the carbon inputs via NPP in wood harvests, forest fires, losses to lakes and rivers and heterotrophic respiration remain uncertain, which explains the considerable uncertainty of NBP. Inventory-based assessments and assumptions suggest that 29±15% of the NBP (i.e., 22 g C m,2 yr,1) is sequestered in the forest soil, but large uncertainty remains concerning the drivers and future of the soil organic carbon. The remaining 71±15% of the NBP (i.e., 53 g C m,2 yr,1) is realized as woody biomass increments. In the EU-25, the relatively large forest NBP is thought to be the result of a sustained difference between NPP, which increased during the past decades, and carbon losses primarily by harvest and heterotrophic respiration, which increased less over the same period. [source] From Molecular Machines to Microscale Motility of Objects: Application as "Smart Materials", Sensors, and NanodevicesADVANCED FUNCTIONAL MATERIALS, Issue 5 2007I. Willner Abstract Machinelike operations are common functions in biological systems, and substantial recent research efforts are directed to mimic such processes at the molecular or nanoscale dimensions. The present Feature Article presents three complementary approaches to design machinelike operations: by the signal-triggered mechanical shuttling of molecular components; by the signal-triggering of chemical processes on surfaces, resulting in mechanical motion of micro/nanoscale objects; and by the fuel-triggered motility of biomolecule,metal nanowire hybrid systems. The shuttling of molecular components on molecular wires assembled on surfaces in semirotaxane configurations using electrical or optical triggering signals is described. The control of the hydrophilic/hydrophobic surface properties through molecular shuttling or by molecular bending/stretching processes is presented. Stress generated on microelements, such as cantilevers, results in the mechanical deflection of the cantilever. The deposition of a redox-active polyaniline film on a cantilever allows the reversible electrochemically induced deflection and retraction of the cantilever by the electrochemical oxidation or reduction of the polymer film, respectively. A micro-robot consisting of the polypyrrole (PPy) polymer deposited on a multi-addressable configuration of electrodes is described. Au magnetic core/shell nanoparticles are incorporated into a polyaniline film, and the conductivity of the composite polymer is controlled by an external magnet. Finally, the synthesis of a hybrid nanostructure consisting of two actin filaments tethered to the two ends of a Au nanowire is described. The adenosine triphosphate (ATP)-fueled motility of the hybrid nanostructure on a myosin monolayer associated with a solid support is demonstrated. [source] Effects of intensive harvesting on moose reproductionJOURNAL OF APPLIED ECOLOGY, Issue 3 2000Catherine Laurian Summary 1.,It has been hypothesized that a balanced adult sex ratio is necessary for the full participation of ungulate females in reproduction and therefore high productivity. We tested this general hypothesis by combining two complementary approaches. 2.,First, using telemetry (n = 60) and annual aerial censuses between 1995 and 1998, we compared two moose Alces alces populations in Quebec, Canada, one non-harvested and the other subject to intensive sport harvesting from the end of September to mid-October. We tested the following predictions for the harvested population: (i) females increase movements and home ranges during the mating period; (ii) the mating system is modified, with the appearance of groups of one male and many females; (iii) subadult males participate in reproduction; (iv) the mating period extends over two to three oestrus cycles; (v) the calving period extends over several months; and (vi) productivity declines. 3.,Daily movements and home range sizes during the mating period did not differ between harvested and non-harvested populations. Most groups observed were male,female pairs. Subadult males (1·5,2·5 years old) were only observed with females in the harvested population. Mating and calving periods did not differ between populations. The proportion of females that gave birth and the number of calves produced were also comparable in the two populations. 4.,Secondly, we also assessed the existence of a relationship between population productivity and percentage of males in various management units of the province of Quebec that were characterized by a wide range in sex ratios. Contrary to prediction (vi), the number of calves per 100 adult females was not related to the percentage of adult males in the population. 5.,The participation of young adult males (subadults) in reproduction in our harvested population may have compensated for the lower percentage of adult males, and thus productivity was unaffected. We therefore reject the hypothesis that intensive harvesting, at least at the level we observed, affects reproduction and population productivity. 6.,As there are some uncertainties regarding the long-term effects of high hunting pressure, however, managers should favour sex ratios close to levels observed in non-harvested populations. [source] Phylogenetic relationships, diversification and biogeography in Neotropical Brotogeris parakeetsJOURNAL OF BIOGEOGRAPHY, Issue 9 2009Camila C. Ribas Abstract Aim, We present a molecular phylogenetic analysis of Brotogeris (Psittacidae) using several distinct and complementary approaches: we test the monophyly of the genus, delineate the basal taxa within it, uncover their phylogenetic relationships, and finally, based on these results, we perform temporal and spatial comparative analyses to help elucidate the historical biogeography of the Neotropical region. Location, Neotropical lowlands, including dry and humid forests. Methods, Phylogenetic relationships within Brotogeris were investigated using the complete sequences of the mitochondrial genes cyt b and ND2, and partial sequences of the nuclear intron 7 of the gene for Beta Fibrinogen for all eight species and 12 of the 17 taxa recognized within the genus (total of 63 individuals). In order to delinetae the basal taxa within the genus we used both molecular and plumage variation, the latter being based on the examination of 597 skin specimens. Dates of divergence and confidence intervals were estimated using penalized likelihood. Spatial and temporal comparative analyses were performed including several closely related parrot genera. Results,Brotogeris was found to be a monophyletic genus, sister to Myiopsitta. The phylogenetic analyses recovered eight well-supported clades representing the recognized biological species. Although some described subspecies are diagnosably distinct based on morphology, there was generally little intraspecific mtDNA variation. The Amazonian species had different phylogenetic affinities and did not group in a monophyletic clade. Brotogeris diversification took place during the last 6 Myr, the same time-frame as previously found for Pionus and Pyrilia. Main conclusions, The biogeographical history of Brotogeris implies a dynamic history for South American biomes since the Pliocene. It corroborates the idea that the geological evolution of Amazonia has been important in shaping its biodiversity, argues against the idea that the region has been environmentally stable during the Quaternary, and suggests dynamic interactions between wet and dry forest habitats in South America, with representatives of the Amazonian biota having several independent close relationships with taxa endemic to other biomes. [source] GPR30 Differentially Regulates Short Latency Responses of Luteinising Hormone and Prolactin Secretion to OestradiolJOURNAL OF NEUROENDOCRINOLOGY, Issue 9 2009D. Lebesgue Rapid, nongenomic actions of 17,-oestradiol (E2) on hypothalamic neurones that may be relevant to reproductive function were described decades ago. The orphan G protein-coupled receptor, GPR30, was recently shown to bind oestrogens and to trigger rapid signalling in vitro, and is expressed in several rat and human brain regions, including the hypothalamus. We used two complementary approaches to investigate the role of GPR30 in hypothalamic responses to E2 that are relevant to reproductive physiology. Serial blood sampling after the acute administration of the selective GPR30 agonist G1 was used to assess the role of GPR30 in short latency negative-feedback inhibition of luteinising hormone (LH) secretion and facilitation of prolactin secretion in ovariohysterectomised female rats. In vivo RNA interference (RNAi), mediated by adeno-associated virus-expressing small hairpin RNA (shRNA) infused into the mediobasal hypothalamus, was used to study the effects of GPR30 knockdown on these rapid responses to E2. Longer-term actions of E2 on female sexual behaviour (lordosis) were also examined in female rats subjected to in vivo RNAi. Administration of E2 or G1 triggered a short latency surge of prolactin secretion, and animals subjected to GPR30 RNAi showed significantly less E2 -dependent prolactin release than animals receiving control virus. G1 did not mimic E2 negative-feedback inhibition of LH secretion, and GPR30 RNAi did not interfere with E2 suppression of LH or facilitation of lordosis behaviour. These findings suggest that activation of GPR30 promotes short latency prolactin secretion but does not mediate E2 negative-feedback inhibition of LH secretion or E2 facilitation of female reproductive behaviour. [source] Intensive insulin treatment in coronary and intensive carePRACTICAL DIABETES INTERNATIONAL (INCORPORATING CARDIABETES), Issue 1 2007Dr C Jones MRCP, MB ChB Specialist Registrar Abstract Hyperglycaemia in the setting of acute illness carries a poor prognosis. The first Diabetes and Insulin-Glucose infusion in Acute Myocardial Infarction (DIGAMI) study demonstrated a reduction in total mortality with intravenous insulin to reduce hyperglycaemia followed by multi-dose subcutaneous insulin in diabetic patients following myocardial infarction. Unfortunately, there were several problems with the follow-up DIGAMI-2 study, so that it is not clear if maximum benefit was obtained by intravenous insulin, subcutaneous insulin, or a combination of both. In the surgical intensive care unit (ICU) setting, intensive insulin to restore normoglycaemia reduced total mortality in patients admitted to a surgical ICU who developed hyperglycaemia. In a follow-up study in medical ICU patients the results were disappointing, and there was no overall reduction in mortality. There is a need for a study which would combine these two complementary approaches, examining the possible benefits of using very intensive insulin treatment to achieve normoglycaemia following myocardial infarction in patients with diabetes. Copyright © 2007 John Wiley & Sons. [source] Proteome approaches combined with Fourier transform infrared spectroscopy revealed a distinctive biofilm physiology in Bordetella pertussisPROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 23-24 2008Diego Omar Serra Abstract Proteome analysis was combined with whole-cell metabolic fingerprinting to gain insight into the physiology of mature biofilm in Bordetella pertussis, the agent responsible for whooping cough. Recent reports indicate that B. pertussis adopts a sessile biofilm as a strategy to persistently colonize the human host. However, since research in the past mainly focused on the planktonic lifestyle of B. pertussis, knowledge on biofilm formation of this important human pathogen is still limited. Comparative studies were carried out by combining 2-DE and Fourier transform infrared (FT-IR) spectroscopy with multivariate statistical methods. These complementary approaches demonstrated that biofilm development has a distinctive impact on B. pertussis physiology. Results from MALDI-TOF/MS identification of proteins together with results from FT-IR spectroscopy revealed the biosynthesis of a putative acidic-type polysaccharide polymer as the most distinctive trait of B. pertussis life in a biofilm. Additionally, expression of proteins known to be involved in cellular regulatory circuits, cell attachment and virulence was altered in sessile cells, which strongly suggests a significant impact of biofilm development on B. pertussis pathogenesis. In summary, our work showed that the combination of proteomics and FT-IR spectroscopy with multivariate statistical analysis provides a powerful tool to gain further insight into bacterial lifestyles. [source] A comparison of quality function deployment and conjoint analysis in new product designTHE JOURNAL OF PRODUCT INNOVATION MANAGEMENT, Issue 5 2002Madeleine E. Pullman In this work, we compare two product design approaches, quality function deployment (QFD) and conjoint analysis, by applying each to the design of a new all-purpose climbing harness for the beginning/intermediate ability climber that would complement a leading manufacturer's existing product line. While many of the optimal design features were the same under both approaches, the differences allow us to highlight the strengths of each approach. With conjoint analysis, it was easier to compare the most preferred features (i.e., ones that maximized sales) to profit maximizing features and also to develop designs that optimize product line sales or profits. On the other hand, QFD was able to highlight the fact that certain engineering characteristics or design features had both positive and negative aspects. This tradeoff could point the way to "out of the box" solutions. QFD also highlighted the importance of starting explicitly with customer needs, regardless of which method is used. Rather than competing, we view them as complementary approaches that should be conducted simultaneously; each providing feedback to the other. When the two approaches differed on the optimal level or importance of a feature, it appeared that conjoint analysis better captured customers' current preferences for product features while QFD captured what product developers thought would best satisfy customer needs. Looking at the problem through these different lenses provides a useful dialogue that should not be missed. QFD's ability to generate creative or novel solutions should be combined with conjoint analysis' ability to forecast market reaction to design changes. © 2002 Elsevier Science Inc. All rights reserved. [source] Let them fly or light them up: matrix-assisted laser desorption/ionization time of flight (MALDI-TOF) mass spectrometry and fluorescence in situ hybridization (FISH),APMIS, Issue 11-12 2004BIRGITTA SCHWEICKERT This review focuses on clinical bacteriology and by and large does not cover the detection of fungi, viruses or parasites. It discusses two completely different but complementary approaches that may either supplement or replace classic culture-based bacteriology. The latter view may appear provocative in the light of the actual market penetration of molecular genetic testing in clinical bacteriology. Despite its elegance, high specificity and sensitivity, molecular genetic diagnostics has not yet reached the majority of clinical laboratories. The reasons for this are manifold: Many microbiologists and medical technologists are more familiar with classical microbiological methods than with molecular biology techniques. Culture-based methods still represent the work horse of everyday routine. The number of available FDA-approved molecular genetic tests is limited and external quality control is still under development. Finally, it appears difficult to incorporate genetic testing in the routine laboratory setting due to the limited number of samples received or the lack of appropriate resources. However, financial and time constraints, particularly in hospitals as a consequence of budget cuts and reduced length of stay, lead to a demand for significantly shorter turnaround times that cannot be met by culture-dependent diagnosis. As a consequence, smaller laboratories that do not have the technical and personal equipment required for molecular genetic amplification techniques may adopt alternative methods such as fluorescence in situ hybridization (FISH) that combines easy-to-perform molecular hybridization with microscopy, a technique familiar to every microbiologist. FISH is hence one of the technologies presented here. For large hospital or reference laboratories with a high sample volume requiring massive parallel high-throughput testing we discuss matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF) of nucleic acids, a technology that has evolved from the post-genome sequencing era, for high-throughput sequence variation analysis (1, 2). [source] Hypoxia-inducible factor 1, inhibits the fibroblast-like markers type I and type III collagen during hypoxia-induced chondrocyte redifferentiation: Hypoxia not only induces type II collagen and aggrecan, but it also inhibits type I and type III collagen in the hypoxia-inducible factor 1,,dependent redifferentiation of chondrocytesARTHRITIS & RHEUMATISM, Issue 10 2009Elise Duval Objective Autologous chondrocyte implantation requires expansion of cells ex vivo, leading to dedifferentiation of chondrocytes (loss of aggrecan and type II collagen to the profit of type I and type III collagens). Several approaches have been described for redifferentiation of these cells. Among them, low oxygen tension has been exploited to restore the differentiated chondrocyte phenotype, but molecular mechanisms of this process remain unclear. However, under conditions of hypoxia, one of the major factors involved is hypoxia-inducible factor 1, (HIF-1,). The purpose of this study was to investigate the role of HIF-1, during human chondrocyte redifferentiation. Methods We used complementary approaches to achieving HIF-1, loss (inhibition by cadmium ions and dominant-negative expression) or gain (ectopic expression and cobalt ion treatment) of function. Expression of chondrocyte, as well as fibroblast-like, phenotype markers was determined using real-time reverse transcription,polymerase chain reaction and Western blot analyses. Binding activities of HIF-1, and SOX9, a pivotal transcription factor of chondrogenesis, were evaluated by electrophoretic mobility shift assays and by chromatin immunoprecipitation assay. Results We found that hypoxia and HIF-1, not only induced the expression of SOX9, COL2A1, and aggrecan, but they simultaneously inhibited the expression of COL1A1, COL1A2, and COL3A1. In addition, we identified the binding of HIF-1, to the aggrecan promoter, the first such reported demonstration of this binding. Conclusion This study is the first to show a bimodal role of HIF-1, in cartilage homeostasis, since HIF-1, was shown to favor specific markers and to impair dedifferentiation. This suggests that manipulation of HIF-1, could represent a promising approach to the treatment of osteoarthritis. [source] | |||||||||||||||||||||||||||||||