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Comparing Patterns (comparing + pattern)
Selected AbstractsSwimming activity of seabass: comparing patterns obtained in natural environment and in re-circulating tanks under high densityJOURNAL OF FISH BIOLOGY, Issue 2004M.-L. Bégout Anras Seabass (Dicentrarchus labrax) swimming activity was compared between natural environments and aquaculture facilities. Behaviour under natural conditions was assessed in a saltmarsh pond (250 m2, 18 × 14 × 0ˇ8 m) using acoustic telemetry. From several surveys, we documented the diel activity rhythm and demonstrated group effects on swimming patterns and amplitudes by comparing activity of solitary fish with that of a fish living in a group of 60. Consequences of weather variability were also analysed and revealed a high sensitivity of fish to atmospheric conditions for both swimming and demand-feeding behaviour. Behaviour in fish tanks was also studied using acoustic telemetry, as part of the EUREKA EU1 960 ,Aqua-Maki 2' project investigating aspects of fish culture in re-circulating tanks under high density. A re-circulating hexagonal tank (5ˇ4 × 5ˇ4 m, 1ˇ8 m depth, 48 m3) was equipped with positioning and demand-feeding systems, oxygen and temperature probes. Initial density was 50 kg m3 in March and rose to 90 kg m3 at the end of the experiment in May. During this period, the movements of nine fish were continuously recorded for 24 h each, reaching a total of six 24 h episode at eight days interval. Swimming activity was analysed in terms of activity rhythms and space occupation specially around feeding events. The two data set and main results will be presented and compared to assess seabass behavioural plasticity and sensitivity to husbandry conditions. [source] Direct parametric inference for the cumulative incidence functionJOURNAL OF THE ROYAL STATISTICAL SOCIETY: SERIES C (APPLIED STATISTICS), Issue 2 2006Jong-Hyeon Jeong Summary., In survival data that are collected from phase III clinical trials on breast cancer, a patient may experience more than one event, including recurrence of the original cancer, new primary cancer and death. Radiation oncologists are often interested in comparing patterns of local or regional recurrences alone as first events to identify a subgroup of patients who need to be treated by radiation therapy after surgery. The cumulative incidence function provides estimates of the cumulative probability of locoregional recurrences in the presence of other competing events. A simple version of the Gompertz distribution is proposed to parameterize the cumulative incidence function directly. The model interpretation for the cumulative incidence function is more natural than it is with the usual cause-specific hazard parameterization. Maximum likelihood analysis is used to estimate simultaneously parametric models for cumulative incidence functions of all causes. The parametric cumulative incidence approach is applied to a data set from the National Surgical Adjuvant Breast and Bowel Project and compared with analyses that are based on parametric cause-specific hazard models and nonparametric cumulative incidence estimation. [source] Effects of natural selection on patterns of DNA sequence variation at the transferrin, somatolactin, and p53 genes within and among chinook salmon (Oncorhynchus tshawytscha) populationsMOLECULAR ECOLOGY, Issue 7 2000Michael J. Ford Abstract This paper describes DNA sequence variation within and among four populations of chinook salmon (Oncorhynchus tshawytscha) at the transferrin, somatolactin and p53 genes. Patterns of variation among salmon species at the transferrin gene have been hypothesized to be shaped by positive natural selection for new alleles because the rate of nonsynonymous substitution is significantly greater than the rate of synonymous substitution. The twin goals of this study were to determine if the history of selection among salmon species at the transferrin gene is also reflected in patterns of intraspecific variation in chinook salmon, and to look for evidence of local adaptation at the transferrin gene by comparing patterns of nonsynonymous and synonymous variation among chinook salmon populations. The analyses presented here show that unlike patterns of variation between species, there is no evidence of greater differentiation among chinook salmon populations at nonsynonymous compared to synonymous sites. There is also no evidence of a reduction of within-species variation due to the hitchhiking effect at the transferrin gene, although in some populations nonsynonymous and synonymous derived mutations are both at higher frequencies than expected under a simple neutral model. Population size weighted selection coefficients (4Ns) that are consistent with both the inter and intraspecific data range from ~10 to ~235, and imply that between 1 and 40% of new nonsynonymous mutations at the transferrin gene have been beneficial. [source] Causes of spatial patterns of fruit set in waratah: Temporal vs. spatial interactions between flowers on an inflorescenceAUSTRAL ECOLOGY, Issue 1 2009ROBERT J. WHELAN Abstract Spatial patterns of fruit set within inflorescences may be controlled by pollination, nutrient allocation, or inflorescence architecture. Generally, flowers that have spatial and/or temporal precedence are more likely to set fruits. We sought to separate these factors by comparing patterns of fruit set on inflorescences of two species of Telopea (Proteaceae); one that flowers from the tip to the base of the rachis, the other from base to tip. In both species, most fruits were set at the top of the inflorescence (the last flowers to open for T. speciosissima) and this was extreme for T. mongaensis, where the top flowers open first. Fruit set was not generally limited by inadequate pollination for either T. mongaensis or T. speciosissima, as hand pollinations did not increase fruit set and many abscised flowers contained pollen tubes. In T. speciosissima, we tested whether removal of developing topmost fruits would ,release' those that had initiated but not yet aborted lower down. There was no significant effect. Plant hormones can increase the degree to which a developing fruit is a sink for nutrients, so we applied cytokinin to the developing lower fruits on some inflorescences. There was no significant effect of the hormone treatment. We conclude that temporal precedence may contribute to the skewed pattern of fruit set in T. mongaensis, because there was an extreme concentration of fruit set on the distal part of the inflorescences, but it cannot explain this pattern of fruit set in T. speciosissima, where the distal flowers are the last to open. Some other process must therefore constrain fruit set to the topmost flowers in an inflorescence. While cytokinin application had no significant effect, the power of this experiment was low and we consider that the hypothesis of hormonal control is worth further exploration. [source] Comparison of Properties of Tests for Assessing Tumor ClonalityBIOMETRICS, Issue 4 2008Irina Ostrovnaya Summary In a recent article Begg et al. (2007, Biometrics 63, 522,530) proposed a statistical test to determine whether or not a diagnosed second primary tumor is biologically independent of the original primary tumor, by comparing patterns of allelic losses at candidate genetic loci. The proposed concordant mutations test is a conditional test, an adaptation of Fisher's exact test, that requires no knowledge of the marginal mutation probabilities. The test was shown to have generally good properties, but is susceptible to anticonservative bias if there is wide variation in mutation probabilities between loci, or if the individual mutation probabilities of the parental alleles for individual patients differ substantially from each other. In this article, a likelihood ratio test is derived in an effort to address these validity issues. This test requires prespecification of the marginal mutation probabilities at each locus, parameters for which some information will typically be available in the literature. In simulations this test is shown to be valid, but to be considerably less efficient than the concordant mutations test for sample sizes (numbers of informative loci) typical of this problem. Much of the efficiency deficit can be recovered, however, by restricting the allelic imbalance parameter estimate to a prespecified range, assuming that this parameter is in the prespecified range. [source] | |||||||||||||