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Common Environment (common + environment)
Selected AbstractsSIMDE: An educational simulator of ILP architectures with dynamic and static schedulingCOMPUTER APPLICATIONS IN ENGINEERING EDUCATION, Issue 3 2007I. Castilla Abstract This article presents SIMDE, a cycle-by-cycle simulator to support teaching of Instruction-Level Parallelism (ILP) architectures. The simulator covers dynamic and static instruction scheduling by using a shared structure for both approaches. Dynamic scheduling is illustrated by means of a simple superscalar processor based on Tomasulo's algorithm. A basic Very Long Instruction Word (VLIW) processor has been designed for static scheduling. The simulator is intended as an aid-tool for teaching theoretical contents in Computer Architecture and Organization courses. The students are provided with an easy-to-use common environment to perform different simulations and comparisons between superscalar and VLIW processors. Furthermore, the simulator has been tested by students in a Computer Architecture course in order to assess its real usefulness. © 2007 Wiley Periodicals, Inc. Comput Appl Eng Educ 14: 226,239, 2007; Published online in Wiley InterScience (www.interscience.wiley.com); DOI 10.1002/cae.20154 [source] Parallel programming on a high-performance application-runtimeCONCURRENCY AND COMPUTATION: PRACTICE & EXPERIENCE, Issue 18 2008Wojtek James Goscinski Abstract High-performance application development remains challenging, particularly for scientists making the transition to a heterogeneous grid environment. In general areas of computing, virtual environments such as Java and .Net have proved to be successful in fostering application development, allowing users to target and compile to a single environment, rather than a range of platforms, instruction sets and libraries. However, existing runtime environments are focused on business and desktop computing and they do not support the necessary high-performance computing (HPC) abstractions required by e-Scientists. Our work is focused on developing an application-runtime that can support these services natively. The result is a new approach to the development of an application-runtime for HPC: the Motor system has been developed by integrating a high-performance communication library directly within a virtual machine. The Motor message passing library is integrated alongside and in cooperation with other runtime libraries and services while retaining a strong message passing performance. As a result, the application developer is provided with a common environment for HPC application development. This environment supports both procedural languages, such as C, and modern object-oriented languages, such as C#. This paper describes the unique Motor architecture, presents its implementation and demonstrates its performance and use. Copyright © 2008 John Wiley & Sons, Ltd. [source] Optimization of integrated Earth System Model components using Grid-enabled data management and computationCONCURRENCY AND COMPUTATION: PRACTICE & EXPERIENCE, Issue 2 2007A. R. Price Abstract In this paper, we present the Grid enabled data management system that has been deployed for the Grid ENabled Integrated Earth system model (GENIE) project. The database system is an augmented version of the Geodise Database Toolbox and provides a repository for scripts, binaries and output data in the GENIE framework. By exploiting the functionality available in the Geodise toolboxes we demonstrate how the database can be employed to tune parameters of coupled GENIE Earth System Model components to improve their match with observational data. A Matlab client provides a common environment for the project Virtual Organization and allows the scripting of bespoke tuning studies that can exploit multiple heterogeneous computational resources. We present the results of a number of tuning exercises performed on GENIE model components using multi-dimensional optimization methods. In particular, we find that it is possible to successfully tune models with up to 30 free parameters using Kriging and Genetic Algorithm methods. Copyright © 2006 John Wiley & Sons, Ltd. [source] Effects of size and morphology on swimming performance in juvenile brown trout (Salmo trutta L.)ECOLOGY OF FRESHWATER FISH, Issue 4 2003A. F. Ojanguren Abstract,,, Our study assesses swimming capacity (speed and stamina) and possible morphometric determinants of locomotor performance of juvenile brown trout (Salmo trutta L.). We addressed these issues at the individual level to have an approach of the functional significance of intraspecific variation in morphological design. Both swimming speed and endurance time showed significant positive relationships with fish length. Size-corrected values of speed and endurance time were negatively correlated suggesting a phenotypic trade-off between burst and prolonged swimming. Size was also highly correlated with all the morphological variables measured. Therefore, we used the residuals of the regressions of those variables on fish length to remove the effect of body size. A principal components analysis (PCA) summarised the 12 morphological variables into two factors, which accounted for 44.3% of the variance. PC1 combined several measures of body depth and width, whereas PC2 represented mainly postanal length relative to abdomen length. Relationships between the scores of the two factors and size-corrected values of maximum swimming speed and endurance time were weak. PC2 showed a significant positive relationship with endurance time; that is, individuals with longer caudal regions were able to swim against water flow for longer periods of time. Stoutness (PC1) showed a marginally significant negative correlation with endurance time. The lack of stronger relationships could be because of the low morphometric variability among the test individuals, all proceeding from the same population, reared in a common environment, and measured at the same ontogenetic stage. [source] Liquidity Constrained Markets Versus Debt Constrained MarketsECONOMETRICA, Issue 3 2001Timothy J. Kehoe This paper compares two different models in a common environment. The first model has liquidity constraints in that consumers save a single asset that they cannot sell short. The second model has debt constraints in that consumers cannot borrow so much that they would want to default, but is otherwise a standard complete markets model. Both models share the features that individuals are unable to completely insure against idiosyncratic shocks and that interest rates are lower than subjective discount rates. In a stochastic environment, the two models have quite different dynamic properties, with the debt constrained model exhibiting simple stochastic steady states, while the liquidity constrained model has greater persistence of shocks. [source] EVOLUTION OF TEMPORAL ISOLATION IN THE WILD: GENETIC DIVERGENCE IN TIMING OF MIGRATION AND BREEDING BY INTRODUCED CHINOOK SALMON POPULATIONSEVOLUTION, Issue 4 2000Thomas P. Quinn Abstract. The timing of migration and breeding are key life-history traits; they are not only adaptations of populations to their environments, but can serve to increase reproductive isolation, facilitating further divergence among populations. As part of a study of divergence of chinook salmon, Oncorhynchus tshawytscha, populations, established in New Zealand from a common source in the early 1900s, we tested the hypotheses that the timing of migration and breeding are under genetic control and that the populations genetically differ in these traits despite phenotypic overlap in timing in the wild. Representatives of families from two populations were collected within a day or two of each other, reared in a common environment, and then released to sea from each of two different rivers, while other family representatives were retained in fresh water to maturity. The date of maturation of fish held in fresh water and the dates of return from the ocean and maturation of fish released to sea all showed significant differences between the two populations and among families within populations. The very high heritabilities and genetic correlations estimated for migration and maturation date indicated that these traits would respond rapidly to selection. Combined with the results of related studies on these chinook salmon populations, it appears that spawning time may not only evolve during the initial phases of divergence, but it may play an important role in accelerating divergence in other traits. [source] Fitness consequences of temperature-mediated egg size plasticity in a butterflyFUNCTIONAL ECOLOGY, Issue 6 2003K. Fischer Summary 1By randomly dividing adult females of the butterfly Bicyclus anynana, reared in a common environment, among high and low temperatures, it is demonstrated that oviposition temperature induces a plastic response in egg size. Females kept at a lower temperature laid significantly larger eggs than those ovipositing at a higher temperature. 2Cross-transferring the experimentally manipulated eggs between temperatures and investigating hatching success showed that a lower rearing temperature is more detrimental for the smaller eggs produced at a higher temperature than for the larger eggs produced at a lower temperature, supporting an adaptive explanation. 3However, when examining two potential mechanisms for an increased fitness of larger offspring (higher desiccation resistance of larger eggs and higher starvation resistance of larger hatchlings), no direct link between egg size and offspring fitness was found. Throughout, i.e. even under benign conditions, larger offspring had a higher fitness. 4Therefore, egg size should be viewed as a conveniently measurable proxy for the plastic responses induced by temperature, but caution is needed before implying that egg size per se is causal in influencing offspring traits. [source] Genetic parameters for individual birth and weaning weight and for litter size of Large White pigsJOURNAL OF ANIMAL BREEDING AND GENETICS, Issue 3 2000D. Kaufmann Summary Data from a French experimental herd recorded between 1990 and 1997 were used to estimate genetic parameters for individual birth and weaning weight, as well as litter size of Large White pigs using restricted maximum likelihood (REML) methodology applied to a multivariate animal model. In addition to fixed effects the model included random common environment of litter, direct and maternal additive genetic effects. The data consisted of 1928 litters including individual weight observations from 18151 animals for birth weight and from 15360 animals for weaning weight with 5% of animals transferred to a nurse. Estimates of direct and maternal heritability and proportion of the common environmental variance for birth weight were 0.02, 0.21 and 0.11, respectively. The corresponding values for weaning weight were 0.08, 0.16 and 0.23 and for litter size 0.22, 0.02 and 0.06, respectively. The direct and the maternal genetic correlations between birth and weaning weight were positive (0.59 and 0.76). Weak positive (negative) genetic correlations between direct effects on weight traits and maternal effects on birth weight (weaning weight) were found. Negative correlations were found between direct genetic effect for litter size and maternal genetic effects on all three traits. The negative relationship between litter size and individual weight requires a combined selection for litter size and weight. Zusammenfassung Daten einer französischen Versuchsherde aus den Jahren 1990 bis 1997 wurden für die Schätzung von genetischen Parametern für individuelles Geburts-, Absetzgewicht und Wurfgrösse bei französischen Large White verwendet. Die Schätzung der Parameter erfolgte mit der Restricted Maximum Likelihood Methode (REML) angewandt auf ein multivariates Tiermodell. Neben fixen Effekten berücksichtigte das Modell die zufällige gemeinsame Wurfumwelt und direkte und maternale additiv genetische Effekte. Der Datensatz bestand aus 1928 Wurfaufzeichnungen mit Angaben zum individuellen Geburtsgewicht von 18151 Tieren und zum Absetzgewicht von 15360 Tieren. Nach der Geburt wurden 5% der Ferkel in einen anderen Wurf versetzt. Die geschätzten Werte für die direkte, die maternale Heritabilität und den Varianzanteil der Wurfumwelt waren für das Geburtsgewicht 0.02, 0.21 und 0.11. Die entsprechenden Werte für das Absetzgewicht waren 0.08, 0.16 und 0.23 und für die Wurfgrösse 0.22, 0.02 und 0.06. Die direkten und die maternalen genetischen Korrelationen zwischen Geburts-und Absetzgewicht waren positiv (0.59 und 0.76). Schwache positive (negative) genetische Korrelationen wurden zwischen den direkten genetischen Effekten auf die Gewichtsmerkmale und dem maternalen genetischen Effekt auf das Geburtsgewicht (Absetzgewicht) gefunden. Negative Korrelationen gab es zwischen dem direkten genetischen Effekt auf die Wurfgrösse und den maternalen genetischen Effekten auf alle drei Merkmale. Die negative Beziehung zwischen Wurfgrösse und individuellem Gewicht verlangt nach einer kombinierten Selektion für Wurfgrösse und Gewicht. [source] Reduced reproductive success and offspring survival in fragmented populations of the forest herb Phyteuma spicatumJOURNAL OF ECOLOGY, Issue 6 2005ANNETTE KOLB Summary 1Habitat fragmentation, which reduces the size and increases the isolation of populations, is a major threat to biodiversity. For Phyteuma spicatum, a self-incompatible, rare understorey herb in deciduous forests of north-western Germany, I tested the hypotheses that: (i) fitness (in terms of reproductive success) is reduced in small or isolated populations, (ii) reproduction in small populations is reduced by pollen limitation and (iii) genetic effects cause fitness reductions in small populations. 2I compared the reproductive success of plants of Phyteuma in 14 populations of different size and degree of isolation. Seed production was, as predicted, positively related to population size but was also influenced by plant size, although not by population isolation, density or habitat quality. 3I performed supplemental hand-pollinations in 10 of the 14 populations using pollen from the same population (test for pollen quantity) or from another large population (pollen quality). The proportional difference in seed production between hand-pollinated plants and open-pollinated controls increased with decreasing population size, indicating pollinator limitation of reproduction in small populations. There was no difference between the two hand-pollination treatments, suggesting that a sufficient number of cross-compatible mates was available even in the smallest populations. 4Progeny from the 14 populations were grown for 32 weeks in a common environment. There was no effect of population size on germination, but final seedling survival was positively related to population size, and this relationship was more pronounced in the glasshouse than under more favourable growing conditions in a common garden. Genetic effects may thus reduce fitness (here measured in terms of survival) in plants from small populations, making them more susceptible to environmental stress. 5The results suggest that both reproduction and offspring performance may be reduced in small populations even of long-lived species such as Phyteuma spicatum. Different processes, such as pollen limitation and genetic deterioration, may interact and affect local population dynamics and the persistence of species in fragmented landscapes. [source] Reduced fecundity and offspring performance in small populations of the declining grassland plants Primula veris and Gentiana luteaJOURNAL OF ECOLOGY, Issue 1 2000Marc Kéry Summary 1,We studied reproduction and offspring performance in relation to population size in the declining self-incompatible perennials Primula veris and Gentiana lutea. In both species, reproduction was strongly reduced in small populations, where plants produced fewer seeds per fruit and per plant. Total seed mass per plant was higher in large populations, but individual seeds were smaller, indicating a trade-off between seed number and size. Reproduction was depressed most strongly in populations consisting of less than c. 200 (P. veris) and c. 500 plants (G. lutea), respectively. 2,The inclusion of plant size (an integrated measure of habitat quality) in the statistical models did not change the relationships between fecundity and population size. Pollen limitation or inbreeding depression in small populations are therefore more likely explanations for these patterns than is habitat quality. 3,Germination rate and survival of seedlings in a common environment was not related to population size in either species, although P. veris developed into larger rosettes when seeds were derived from large populations. This suggests that inbreeding depression occurs in small populations of P. veris. 4,In a factorial fertilizer-by-competition experiment with P. veris, offspring from larger populations grew significantly larger and responded more strongly to fertilizer. For this declining species genetic deterioration as a result of habitat fragmentation may therefore aggravate the effects of environmental changes such as habitat eutrophication. 5,Our results suggest that small populations may face an increased short-term risk of extinction because of reduced reproduction, and an increased long-term risk because they are less able to respond to environmental changes. [source] Interspecific variations of otolith chemistry in estuarine fish nurseriesJOURNAL OF FISH BIOLOGY, Issue 10 2008P. Reis-Santos Otolith chemical composition differed between juveniles of five fish species (Solea solea, Solea senegalensis, Platichthys flesus, Diplodus vulgaris and Dicentrarchus labrax) in nursery areas of six estuaries along the Portuguese coast (Douro, Ria de Aveiro, Mondego, Tejo, Sado and Mira). Spatially consistent patterns in the concentration of some elements were responsible for differences between species. Discrimination of estuaries using data from all species simultaneously averaged 44·7% of correctly classified cases, whilst discrimination of species averaged 76·2%. Moreover, species-related patterns in otolith fingerprints were highlighted when comparing species for each estuarine nursery area, with intra estuarine species discrimination averages ranging from 86·2 to 100·0%. Similarities in the otolith elemental fingerprints were larger between species with close phylogeny and ecology, particularly between flatfish and perciform species. In addition to the differences in physiological regulation of species, specific microhabitat use in a common environment was suggested as a relevant factor for the differentiation of otolith chemistry among species occurring in the same locations. Despite positive results in specific estuaries, variation in otolith composition limited the use of species as proxies to classify others to their system of origin. [source] Exposure to a common environment erodes inherited between-population trophic morphology differences in Arctic charrJOURNAL OF FISH BIOLOGY, Issue 1 2004G. D. Alexander Arctic charr Salvelinus alpinus juveniles reared from eggs collected from four Scottish populations showed inherited variation in their expression of trophic morphology, measured as a suite of eight characteristics of the head and mouth, before their first exogenous feeding. This demonstrated a genetic component to trophic morphology expression. During a period of 5 months following first feeding, typified by rapid growth, the differential between groups exposed to a common rearing and feeding environment was reduced significantly. It was concluded that this was the result of common environmental exposure acting on phenotypic plasticity in trophic morphology. [source] Network reliability assessment in a random environmentNAVAL RESEARCH LOGISTICS: AN INTERNATIONAL JOURNAL, Issue 6 2003S. Özekici Abstract In this paper we consider networks that consist of components operating under a randomly changing common environment. Our work is motivated by power system networks that are subject to fluctuating weather conditions over time that affect the performance of the network. We develop a general setup for any network that is subject to such environment and present results for network reliability assessment under two repair scenarios. We also present Bayesian analysis of network failure data and illustrate how reliability predictions can be obtained for the network. © 2003 Wiley Periodicals, Inc. Naval Research Logistics 50: 574,591, 2003 [source] The consequences of differential family survival rates and equalizing maternal contributions on the effective population size (Ne) of cultured silver-lipped pearl oysters, Pinctada maximaAQUACULTURE RESEARCH, Issue 8 2010Curtis E Lind Abstract The effective population size (Ne) is a critical gauge of how efficiently an aquaculture operation is capturing or maintaining genetic diversity and can govern the long-term success of genetic selection programmes. In communally reared pearl oysters (Pinctada maxima), high variance in family sizes is a significant contributor towards low Ne and its severity may be compounded by differential survival rates of individual families. To determine the effect of variable survival on Ne in cultured P. maxima, families from two commercial populations were analysed using DNA parentage analyses to monitor survival and changes in relative contributions. Significant shifts in relative contributions were observed between 72 days and 18 months of age in both commercial cohorts (P<0.001). Survival rates were found to be highly variable among families (ranging from 2.5% to 49.5%) when reared in a common environment. Additionally, we investigated whether equalizing maternal family sizes before communal rearing will reduce family size variance, and increase Ne, compared with stocking at naturally produced proportions. Family equalization (E) significantly improved Ne (P=0.013) compared with rearing at natural (N) proportions (E: Ne=7.18±0.34; N: Ne=5.60±0.15); however, this practice may unintentionally magnify negative influences of poor performing families if survival is correlated with other commercially important traits. It is concluded that highly variable family survival will affect Ne in communally reared P. maxima, and the practice of equalizing family sizes in order to maximize Ne may only become consistently beneficial once further progress is made towards understanding, and then reducing variation in family survival rates. [source] Latitudinal variation in axial patterning of the medaka (Actinopterygii: Adrianichthyidae): Jordan's rule is substantiated by genetic variation in abdominal vertebral numberBIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 4 2009KAZUNORI YAMAHIRA Because the body axes of fish consist of two anatomically distinct vertebrae, abdominal and caudal, one type may be more variable in number than the other and thus contribute more to morphological diversification. Jordan's rule, a geographical tendency for fish from higher latitudes to have more vertebrae, has not been examined in terms of numbers of abdominal and/or caudal vertebrae, despite its prevalence. Vertebral observations of wild populations of the medaka (Oryzias latipes) revealed that the latitudinal increase in vertebral number is caused by an increase in abdominal vertebrae; caudal vertebrae did not vary systematically across latitudes. Laboratory experiments revealed that this latitudinal cline in abdominal vertebral number persists in a range of common environments, demonstrating a genetic basis. Phenotypic plasticity was also evident: lower developmental temperatures resulted in more abdominal vertebrae. This indicates that greater numbers of abdominal vertebrae in higher latitude individuals in the wild may be caused not only by genetic factors but by lower habitat temperatures, although the contribution of the former to Jordan's rule is assessed to be much greater. The genetic basis of the latitudinal variation in abdominal vertebral number suggests that selection on functions associated with abdominal regions is the probable explanation for Jordan's rule in this fish. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 96, 856,866. [source] | |||||||||||||