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Closest
Kinds of Closest Terms modified by Closest Selected AbstractsFloristic turnover in Iceland from 15 to 6 Ma , extracting biogeographical signals from fossil floral assemblagesJOURNAL OF BIOGEOGRAPHY, Issue 9 2007Friđgeir Grímsson Abstract Aim, This study aims to document the floristic changes that occurred in Iceland between 15 and 6 Ma and to establish the dispersal mechanisms for the plant taxa encountered. Using changing patterns of dispersal, two factors controlling floristic changes are tested. Possible factors are (1) climate change, and (2) the changing biogeography of Iceland over the time interval studied; that is, the presence or absence of a Miocene North Atlantic Land Bridge. Location, The North Atlantic. Methods, Species lists of fossil plants from Iceland in the time period 15 to 6 Ma were compiled using published data and new data. Closest living analogues were used to establish dispersal properties for the fossil taxa. Dispersal mechanisms of fossil plants were then used to reconstruct how Iceland was colonized during various periods. Results, Miocene floras of Iceland (15,6 Ma) show relatively high floristic turnover from the oldest floras towards the youngest; and few taxa from the oldest floras persist in the younger floras. The frequencies of the various dispersal mechanisms seen in the 15-Ma floras are quite different from those recorded in the 6-Ma floras, and there is a gradual change in the prevailing mode of dispersal from short-distance anemochory and dyschory to long-distance anemochory. Two mechanisms can be used to explain changing floral composition: (1) climate change, and (2) the interaction between the dispersal mechanisms of plants and the increasing isolation of proto-Iceland during the Miocene. Main conclusions, Dispersal mechanisms can be used to extract palaeogeographic signals from fossil floras. The composition of floras and dispersal mechanisms indicate that Iceland was connected both to Greenland and to Europe in the early Middle Miocene, allowing transcontinental migration. The change in prevalence of dispersal modes from 15 to 6 Ma appears to reflect the break-up of a land bridge and the increasing isolation of Iceland after 12 Ma. Concurrent gradual cooling and isolation caused changes in species composition. Specifically, the widening of the North Atlantic Ocean prevented taxa with limited dispersal capability from colonizing Iceland, while climate cooling led to the extinction of thermophilous taxa. [source] Coping With Missing Attribute Values Based on Closest Fit in Preterm Birth Data: A Rough Set ApproachCOMPUTATIONAL INTELLIGENCE, Issue 3 2001Jerzy W. Grzymala-Busse Data mining is frequently applied to data sets with missing attribute values. A new approach to missing attribute values, called closest fit, is introduced in this paper. In this approach, for a given case (example) with a missing attribute value we search for another case that is as similar as possible to the given case. Cases can be considered as vectors of attribute values. The search is for the case that has as many as possible identical attribute values for symbolic attributes, or as the smallest possible value differences for numerical attributes. There are two possible ways to conduct a search: within the same class (concept) as the case with the missing attribute values, or for the entire set of all cases. For comparison, we also experimented with another approach to missing attribute values, where the missing values are replaced by the most common value of the attribute for symbolic attributes or by the average value for numerical attributes. All algorithms were implemented in the system OOMIS. Our experiments were performed on the preterm birth data sets provided by the Duke University Medical Center. [source] Viability of Auction-Based Revenue Management in Sequential MarketsDECISION SCIENCES, Issue 2 2005Tim Baker ABSTRACT The Internet is providing an opportunity to revenue management practitioners to exploit the potential of auctions as a new price distribution channel. We develop a stochastic model for a high-level abstraction of a revenue management system (RMS) that allows us to understand the potential of incorporating auctions in revenue management in the presence of forecast errors associated with key parameters. Our abstraction is for an environment where two market segments book in sequence and revenue management approaches consider auctions in none, one, or both segments. Key insights from our robust results are (i) limited auctions are best employed closest to the final sale date, (ii) counterbalancing forecast errors associated with overall traffic intensity and the proportion of customer arrivals in a segment is more important if an auction is adopted in that segment, and (iii) it is critically important not to err on the side of overestimating market willingness to pay. [source] Development of the neuromuscular system during asexual propagation in an invertebrate chordateDEVELOPMENTAL DYNAMICS, Issue 8 2009Stefano Tiozzo Abstract Botryllus schlosseri is a colonial ascidian, and the closest relative to vertebrates that can completely regenerate its entire body, including all somatic and germline tissues, using an asexual developmental pathway called blastogenesis. This regenerative potential exhibited by Botryllus and other colonial ascidians does not exist in any other chordate and makes B. schlosseri a promising model to investigate the cellular and molecular basis of regeneration. In this report, we describe postembryonic myogenesis and characterized the development of the neural system during blastogenic development. ,-Tubulin immunoreactivity revealed a high correlation with previous studies on the motor nervous system. The pattern of the serotoninergic system in the adult reflects that observed in solitary ascidians, but in early blastogenesis suggests a morphogenic role of this monoamine. In summary, this study provides the morphological framework to dissect the mechanisms underlying the ability to regenerate entire organ systems as an adult in a chordate model. Developmental Dynamics 238:2081,2094, 2009. © 2009 Wiley-Liss, Inc. [source] The emergence of the chordate body plan: some puzzles and problemsACTA ZOOLOGICA, Issue 1 2010Thurston C. Lacalli Abstract Lacalli, T.C. 2010. The emergence of the chordate body plan: some puzzles and problems. ,Acta Zoologica (Stockholm) 91: 4,10 Rather than being sessile filter feeders, ancestral chordates are now thought to have evolved from more active benthic animals, possibly hemichordate-like, that took to swimming, to generate something resembling modern amphioxus. This general picture conceals a number of specific problems that underline how little we understand the transition in detail. I will address three. First, and closest to resolution is the issue of dorsoventral inversion, which has implications for understanding how an internalized brain evolved. This is because the mouth, dorsal after inversion, has first to be moved out of the way. Its migration down the left side of the head during amphioxus development may be a recapitulation of this event. Two other puzzles, both further from resolution are: (1) the significance, if any, of the neurenteric canal, which may be telling us something important about the true nature of deuterostomy, specifically whether hemichordates and echinoderms are deuterostomes for a different reason than chordates, and (2) whether the functional digestive tract of chordates is a secondary replacement of an earlier structure whose fate remains unexplained. Resolving these latter two issues will require a better understanding of molecular level events during development in protochordates and their immediate invertebrate relatives. [source] Original article: The prevalence of Barrett's esophagus in the US: estimates from a simulation model confirmed by SEER dataDISEASES OF THE ESOPHAGUS, Issue 6 2010T. J. Hayeck SUMMARY Barrett's esophagus (BE) is the precursor and the biggest risk factor for esophageal adenocarcinoma (EAC), the solid cancer with the fastest rising incidence in the US and western world. Current strategies to decrease morbidity and mortality from EAC have focused on identifying and surveying patients with BE using upper endoscopy. An accurate estimate of the number of patients with BE in the population is important to inform public health policy and to prioritize resources for potential screening and management programs. However, the true prevalence of BE is difficult to ascertain because the condition frequently is symptomatically silent, and the numerous clinical studies that have analyzed BE prevalence have produced a wide range of estimates. The aim of this study was to use a computer simulation disease model of EAC to determine the estimates for BE prevalence that best align with US Surveillance Epidemiology and End Results (SEER) cancer registry data. A previously developed mathematical model of EAC was modified to perform this analysis. The model consists of six health states: normal, gastroesophageal reflux disease (GERD), BE, undetected cancer, detected cancer, and death. Published literature regarding the transition rates between these states were used to provide boundaries. During the one million computer simulations that were performed, these transition rates were systematically varied, producing differing prevalences for the numerous health states. Two filters were sequentially applied to select out superior simulations that were most consistent with clinical data. First, among these million simulations, the 1000 that best reproduced SEER cancer incidence data were selected. Next, of those 1000 best simulations, the 100 with an overall calculated BE to Detected Cancer rates closest to published estimates were selected. Finally, the prevalence of BE in the final set of best 100 simulations was analyzed. We present histogram data depicting BE prevalences for all one million simulations, the 1000 simulations that best approximate SEER data, and the final set of 100 simulations. Using the best 100 simulations, we estimate the prevalence of BE to be 5.6% (5.49,5.70%). Using our model, an estimated prevalence for BE in the general population of 5.6% (5.49,5.70%) accurately predicts incidence rates for EAC reported to the US SEER cancer registry. Future clinical studies are needed to confirm our estimate. [source] A new platysomid from the Upper Carboniferous of Kansas (USA) and remarks on the systematics of deep-bodied lower actinopterygiansACTA ZOOLOGICA, Issue 2009Kathryn E. Mickle Abstract Scales and presumptive tooth plates from deep-bodied platysomid actinopterygians have previously been reported from the Lower Permian of Kansas (USA), but until now, an articulated specimen from this state has not been recovered. The first articulated deep-bodied platysomid fish from the Upper Carboniferous of Kansas is described herein. This specimen is compared to other known species from the genus Platysomus, with special attention paid to the North American taxa. The cranial osteology of this new specimen is closest to Platysomus schultzei from the Upper Carboniferous of New Mexico. The newly described platysomid species highlights the need for a revision of the fish included within the genus Platysomus. [source] Expressed sequence tag analysis of the diapausing queen of the bumblebee Bombus ignitusENTOMOLOGICAL RESEARCH, Issue 4 2006Yeon-Ju KIM Abstract We constructed a full-length cDNA library from diapausing queens of the bumblebee Bombus ignitus. A total of 480 randomly selected clones was sequenced by single-run 5,-end sequencing. Of these, there were 437 high quality clones, 23 poor quality clones and 20 read-fail clones. Each high quality clone sequence was searched against a public protein database. The most frequently found matching genes were ribosomal proteins (12.5%), p10 (3.58%), cytochrome P450 monooxygenase (3.13%) and sensory appendage protein (2.9%). Sequence similarity analysis between bumblebees and other insect species showed that 72 out of 437 (16.5%) bumblebee expressed sequence tags (EST) matched sequences of Apis mellifera, with matches to Drosophila melanogaster (6.6%), Caenorhabditis briggsae (6.2%), Lysiphlebus testaceipes (4.8%), Periplaneta americana (3.7%) and Anopheles gambiae (3.4%) following, suggesting that sequence similarity of bumblebee EST is closest to that of A. mellifera. Functional classification of EST based on Gene Ontology showed that most genes found by sequencing are associated with physiological processes in the bumblebee. The results of sequencing and analysis of our 437 cDNA demonstrated that high-throughput EST sequencing and data analysis are powerful means for identifying novel genes and for expression profiling. Our bumblebee EST collection could be a useful platform for further studies of gene expression in diapausing bumblebees. [source] Faunal Comparison of Ants among Cheongsando and Other Islands of South Sea in KoreaENTOMOLOGICAL RESEARCH, Issue 1 2002Seong-Joon PARK ABSTRACT This paper attempts to reveal the biogeographic characteristics of ant fauna of the islands among Korean South Sea, using quantitative analyses. The data treated in this paper are those from Cheongsando Is. and 10 other islands in South Sea which have been well investigated. The faunal similarity is examined using the Nomura-Simpson's Coefficient (NSC). Futhermore, the obtained NSC value matrix is examined by a cluster analysis using UPGMA method. The number of species which has been recorded in the 11 islands are 91 species belonging to 34 genera under 4 subfamilies. Among the above 11 islands, Jejudo Is., which is the largest, has the highest number of species, 67 spp., while Geogeumdo Is. has the lowest, 21 spp. Cheongsando Is. which has directly been investigated by authors has 30 species. The NSC- values between the 11 localities investigated range from 0.522 (Wando Is. to Saryangdo Is.) to 1.000 (Namhaedo Is. to Geojedo Is.). The comparative NSC value of Cheongsando Is. and 10 islands range from 0.522 (to Saryangdo Is.) to 0.833 (to Jejudo Is). The cluster analysis using a similarity index (NSC) showed that the islands of these areas could be grouped into 3, a level of 32%. The similarity of Soando Is. and Geomundo Is. were the closest, 63%, while Soando Is. and Namhaedo Is. were the remotest, 32%. The similarity of Jindo Is. and Cheongsando Is, was 63%, while that of Namhaedo Is. and Cheongsando Is. was 32%. [source] Assessing the impact of pollution on the Japaratuba river in Brazil using the Drosophila wing spot testENVIRONMENTAL AND MOLECULAR MUTAGENESIS, Issue 2 2007Silmara de Moraes Pantaleăo Abstract The Drosophila melanogaster somatic mutation and recombination test (SMART) was used to assess the genotoxicity of surface (S) and bottom (B) water and sediment samples collected from Sites 1 and 2 on the Japaratuba River (Sergipe, Brazil), an area impacted by a petrochemical industrial complex that indirectly discharges treated effluent (produced water) into the river. The genotoxicity tests were performed in standard (ST) cross and high bioactivation (HB) cross flies and were conducted on samples taken in March (dry season) and in July (rainy season) of 2003. Mutant spot frequencies found in treatments with unprocessed water and sediment samples from the test sites were compared with the frequencies observed for similar samples taken from a clean reference site (the Jacarecica River in Sergipe, Brazil) and those of negative (ultrapure water) controls. While samples from the Japaratuba River generally produced greater responses than those from the Jacarecica River, positive responses were detected for both the test and reference site samples. All the water samples collected in March 2003 were genotoxic. In July 2003, the positive responses were restricted to water samples collected from Sites 1 B and 2 S in the ST cross. The genotoxicity of the water samples was due to mitotic recombination, and the samples produced similar genotoxic responses in ST and HB flies. The spot frequencies found in the July water samples were considerably lower than those for the March water samples, suggesting a seasonal effect. The only sediment samples that were genotoxic were from Site 1 (March and July) and from the Jacarecica River (March). The genotoxins in these samples produced both somatic mutation (limited to the Site 1 sample in HB flies) and recombination. The results of this study indicate that samples from both the Japaratuba and Jacarecica Rivers were genotoxic, with the most consistently positive responses detected with Site 1 samples, the site closest to the putative pollution source. Environ. Mol. Mutagen. 48:, 2007. © 2007 Wiley-Liss, Inc. [source] Immunocompetence of bivalve hemocytes as evaluated by a miniaturized phagocytosis assayENVIRONMENTAL TOXICOLOGY, Issue 3 2002C. Blaise Abstract Immune function in bivalves can be adversely affected by long-term exposure to environmental contaminants. Investigating alterations in immunity can therefore yield relevant information about the relationship between exposure to environmental contaminants and susceptibility to infectious diseases. We have developed a rapid, cost-effective, and miniaturized immunocompetence assay to evaluate the phagocytic activity, viability, and concentration of hemocytes in freshwater and marine bivalves. Preliminary experiments were performed to optimize various aspects of the assay including 1) the time required for adherence of hemocytes to polystyrene microplate wells, 2) the time required for internalization of fluorescent bacteria, 3) the ratio of hemocytes to fluorescent bacteria in relation to phagocytosis, 4) hemolymph plasma requirements, and 5) the elimination of fluorescence from (noninternalized) bacteria adhering to the external surface of hemocytes. The results of these experiments showed the optimal adherence time for hemocytes in microplate wells to be 1 h, that phagocytosis required at least 2 h of contact with fluorescently labeled E. coli cells, that the number of fluorescent E. coli cells had a positive effect on phagocytic activity, that at least 2.5 million cells/mL were required to measure a significant intake, and that a linear increase in uptake of bacteria (R = 0.91; p < 0.01) could be obtained with concentrations of up to 1.3 × 106 hemocytes/mL. Afterward, the assay was used in two field studies to identify sites having the potential to affect the immunocompetence of bivalves. The first study was conducted on Mya arenaria clams collected at selected contaminated sites in the Saguenay River (Quebec, Canada), and the second examined Elliptio complanata freshwater bivalves that had been exposed to a municipal effluent plume in the St. Lawrence River (Quebec, Canada). In the Saguenay River field study a significant increase in phagocytosis was observed at sites closest to polluted areas. Phagocytotic activity varied over time and was highest during the warmest months (June, July, and August), closely paralleling the spawning period of Mya arenaria clams. In contrast, a drop in phagocytic activity was observed in Elliptio complanata mussels exposed to surface water 4 km downstream of a major municipal effluent plume, with a concomitant increase in the number of hemocytes in the hemolymph. It appears that both immunosuppressive and immunostimulative effects are likely to occur in the field and that responses will be influenced by the type and intensity of contaminants at play. © 2002 Wiley Periodicals, Inc. Environ Toxicol 17: 160,169, 2002; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/tox.10047 [source] Molluscan shellfish biomarker study of the Quebec, Canada, Saguenay Fjord with the soft-shell clam, Mya arenariaENVIRONMENTAL TOXICOLOGY, Issue 3 2002C. Blaise Abstract A spatial and temporal survey of six sites in the Saguenay Fjord and of one adjacent site in the St. Lawrence River estuary (Quebec, Canada) was undertaken to study the possible effects of anthropogenic contaminant input on soft-shell clam (Mya arenaria) populations. Bivalve sampling sites were selected because they reflected a range of areas representative of either no known (or apparent) pollution sources or of areas potentially influenced by different gradients and types of contamination sources. The most upstream site selected in the Saguenay Fjord, nearest to a highly populated and industrialized sector, and the most downstream site, near its mouth with the St. Lawrence River estuary, spanned a distance of some 70 km and encompassed the entire intertidal area suitable for Mya arenaria habitat. To measure effects in collected animals, we used a comprehensive battery of biomarkers composed of metallothionein-like proteins (MT), 7-ethoxyresorufin O-deethylase activity (EROD), DNA damage (DD), lipid peroxidation (LPO), vitellinlike proteins (Vn), phagocytosis (PHAG), nonspecific esterase (NspE) activity, and condition factor (weight-to-length ratio of clams). Vn, PHAG, DD, and NspE biomarkers were assayed in hemolymph (or hemocytes), whereas others (MT, EROD, LPO) were determined in the digestive gland. Whole-tissue metal content was also quantified in clams collected in the spatial survey. The spatial survey conducted in June 1997 showed significant effects at all sites, and principal component analysis indicated in addition that the more important responses were linked to the MT, LPO, and NspE biomarkers. Clams collected from sites closest to the upstream reaches of the fjord generally displayed higher levels of tissue metals (cadmium, manganese), as well as greater responses of NspE activity, MT, LPO, and PHAG. Animals collected from sites influenced by municipal wastewaters had higher levels of Vn, suggesting the presence of environmental estrogens. The results of the temporal survey (six monthly samplings of clams at three sites from May through October, 1997) showed that the bivalve reproductive cycle (vitellogenesis and spawning) can modulate the expression of several biomarkers. Vn levels, for example, were positively correlated with DD and EROD and negatively correlated with MT, suggesting that reproduction can influence the susceptibility of clams to some contaminants. Discrimination analysis over the 6 months of sampling revealed that the mean value of the discriminant function changed significantly over time, suggesting important changes in the relative contribution of each biomarker. In short, this study has provided evidence that clam populations in the Saguenay Fjord are impacted by multiple sources of contamination whose effects can be modulated by reproduction. © 2002 Wiley Periodicals, Inc. Environ Toxicol 17: 170,186, 2002; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/tox.10048 [source] Genotoxicity in wood mice (Apodemus sylvaticus) along a pollution gradient: Exposure-, age-, and gender-related effectsENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 8 2006Jan Scheirs Abstract We investigated the effects of environmental pollution on genetic damage in wood mice (Apodemus sylvaticus) by means of the comet assay, with special attention to the role of age and gender as potential confounding variables. The present study was carried out at four sites along a pollution gradient in the vicinity of Antwerp (Belgium), with a nonferrous smelter as the main pollution source. We measured the concentration of heavy metals (Cd, Co, Cr, Cu, Fe, Mn, Pb, and Zn) in mouse liver and kidney and the concentration of organochlorine compounds (polychlorinated biphenyls and 1,1-dichloro-2,2-bis(p -chlorophenyl)ethylene) in mouse muscle tissue to assess individual exposure. Cadmium exposure was very high at the sites closest to the smelter, and exposure to this metal decreased with increasing distance from the smelter. Exposure to the other pollutants was low to moderate at the different sites. Genetic damage was higher in mice from populations in the vicinity of the nonferrous smelter compared with that in the control populations. A significant increase in genetic damage with age was observed at the most polluted sites, but not at the control sites. Genetic damage was higher in male mice than in female mice at the most polluted site, but not at the other areas. Yet, no obvious relationship was found between individual pollutant levels and individual genetic damage levels. We conclude that the comet assay can be used to compare genotoxicity at the population level if the confounding variables of gender and age are taken into account. However, its use for individual health risk assessment remains questionable. [source] PECTIVE: HERE'S TO FISHER, ADDITIVE GENETIC VARIANCE, AND THE FUNDAMENTALTHEOREM OF NATURAL SELECTIONEVOLUTION, Issue 7 2002James F. Crow Abstract Fisher's fundamental theorem of natural selection, that the rate of change of fitness is given by the additive genetic variance of fitness, has generated much discussion since its appearance in 1930. Fisher tried to capture in the formula the change in population fitness attributable to changes of allele frequencies, when all else is not included. Lessar's formulation comes closest to Fisher's intention, as well as this can be judged. Additional terms can be added to account for other changes. The "theorem" as stated by Fisher is not exact, and therefore not a theorem, but it does encapsulate a great deal of evolutionary meaning in a simple statement. I also discuss the effectiveness of reproductive-value weighting and the theorem in integrated form. Finally, an optimum principle, analogous to least action and Hamilton's principle in physics, is discussed. [source] PHYLOGENETIC RELATIONSHIPS AND MORPHOLOGICAL DIVERSITY IN DARWIN'S FINCHES AND THEIR RELATIVESEVOLUTION, Issue 6 2002Kevin J. Burns Abstract Despite the importance of Darwin's finches to the development of evolutionary theory, the origin of the group has only recently been examined using a rigorous, phylogenetic methodology that includes many potential outgroups. Knowing the evolutionary relationships of Darwin's finches to other birds is important for understanding the context from which this adaptive radiation arose. Here we show that analysis of mitochondrial DNA sequence data from the cytochrome b gene confirm that Darwin's finches are monophyletic. In addition, many taxa previously proposed as the sister taxon to Darwin's finches can be excluded as their closest living relative. Darwin's finches are part of a well-supported monophyletic group of species, all of which build a domed nest. All but two of the non-Darwin's finches included in this clade occur on Caribbean islands and most are Caribbean endemics. These close relatives of Darwin's finches show a diversity of bill types and feeding behaviors similar to that observed among Darwin's finches themselves. Recent studies have shown that adaptive evolution in Darwin's finches occurred relatively quickly. Our data show that among the relatives of Darwin's finches, the evolution of bill diversity was also rapid and extensive. [source] Differential expression of mast cell characteristics in human myeloid cell linesEXPERIMENTAL DERMATOLOGY, Issue 9 2004Pia Welker Abstract:, In order to better understand the mechanisms governing display of mast cell characteristics in human myeloid cells, we have studied the mast cell phenotype in human promyelocytic (HL-60) and myelocytic (U-937, TPH-1) vs. basophilic (KU-812) and mast cell (HMC-1) lines, in part also in skin mast cells and blood monocytes, at mRNA and protein level before and after stimulation with mast cell growth factors. In unstimulated cells, mRNA for the stem cell factor (SCF) receptor c-kit and the gamma chain of the high-affinity IgE receptor (Fc,RI) was noted in all cells studied. Like mast and basophilic cells, THP-1 cells expressed the Fc,RI, and , chains and weakly histidine decarboxylase (HDC), but they lacked mRNA for mast cell-specific proteases [tryptase, chymase, carboxypeptidase A (CPA)]. In contrast, HL-60 and U-937 cells lacked Fc,RI,, but expressed tryptase and chymase, HL-60 cells also CPA. KU-812 cells failed to express the basophil-specific marker 2D7. After a 10-day culture with SCF or fibroblast supernatants, baseline mRNA expression of most mast cell characteristics was upregulated, whereas c-kit mRNA expression decreased in all but THP-1 cells. Differential mRNA expression of Fc,RI vs. protease (tryptase) was confirmed at protein level by immunocytochemistry and enzymatic activity. KU-812 cells are thus closest to skin mast cells in that they express all molecules studied, except for chymase, followed by THP-1 cells that lack all mast cell proteases. In contrast, HL-60 and U-937 cells fail to express the Fc,RI, and , chains but express most mast cell proteases. The selective and differential expression of mast cell characteristics in human myeloid cell lines suggests that induction of the mast cell phenotype is regulated by several independent genes and that mast cells and basophils branch off at early and distinct points of myeloid development. [source] Morphology and anatomy of anomalous short shoots in Pinus (Pinaceae) and their evolutionary meaningFEDDES REPERTORIUM, Issue 3-4 2010Veit Martin Dörken Dr. Abstract Recent Pinus -species are evergreen and have a typical long shoot/short shoot differentiation. For angiosperms we could show that this type of shoot differentiation is linked to deciduousness (Dörken & Stützel 2009). Evergreen angiosperms with prominent shoot differentiation are derived from deciduous ancestors. The primitive evergreen condition is however characterized by the absence of a shoot differentiation. Here it is therefore analysed if the shoot differentiation in Pinus could be regarded as a reminder of a deciduous ancestry. In such a context Pinus monophylla would be functionally closest to a primitive evergreen angiosperm and represent a nearly perfect secondary adaptation to the needs of an evergreen species. Morphology and anatomy of aberrant short shoots in Pinus -species have been analysed to test this hypothesis. We suppose that the ancestor of Pinus had several needle leaves inserted spirally on a well developed short shoot axis ending in a terminal bud, as it can be found in Larix today (© 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] Deconstructing language by comparative gene expression: from neurobiology to microarrayGENES, BRAIN AND BEHAVIOR, Issue S1 2006M. C. Oldham Language is a defining characteristic of our species that has emerged quite recently on an evolutionary timescale. Understanding the neurobiological substrates and genetic underpinnings of language constitutes a basic challenge for both neuroscience and genetics. The functional localization of language in the brain has been progressively refined over the last century through studies of aphasics and more recently through neuroimaging. Concurrently, structural specializations in these brain regions have been identified by virtue of their lateralization in humans and also through comparisons with homologous brain regions in non-human primate species. Comparative genomics has revealed the genome of our closest living relative, the chimpanzee, to be astonishingly similar to our own. To explore the role that changes in the regulation of gene expression have had in recent human evolution, several groups have used microarrays to compare expression levels for thousands of genes in the brain between humans and chimpanzees. By applying this approach to the increasingly refined peri-sylvian network of brain regions involved in language, it may be possible to discern functionally significant changes in gene expression that are universal among humans but unique to our species, thus casting light on the molecular basis of language in the brain. [source] Haplotype analysis and age estimation of the 113insR CDKN2A founder mutation in Swedish melanoma familiesGENES, CHROMOSOMES AND CANCER, Issue 2 2001Jamileh Hashemi Germline mutations in the CDKN2A tumor suppressor gene located on 9p21 have been linked to development of melanomas in some families. A germline 3-bp insertion in exon 2 of CDKN2A, leading to an extra arginine at codon 113 (113insR), has been identified in 17 Swedish melanoma families. Analysis of 10 microsatellite markers, spanning approximately 1 Mbp in the 9p21 region, showed that all families share a common allele for at least one of the markers closest to the CDKN2A gene, suggesting that the 113insR mutation is an ancestral founder mutation. Differences in the segregating haplotypes, due to meiotic recombinations and/or mutations in the short-tandem-repeat markers, were analyzed further to estimate the age of the mutation. Statistical analysis using a maximum likelihood approach indicated that the mutation arose 98 generations (90% confidence interval: 52,167 generations), or approximately 2,000 years, ago. Thus, 113insR would be expected to have a more widespread geographic distribution in European and North American regions with ancestral connections to Sweden. Alternatively, CDKN2A may lie in a recombination hot spot region, as suggested by the many meiotic recombinations in this narrow ,1-cM region on 9p21. © 2001 Wiley-Liss, Inc. [source] New insights from reactive transport modelling: the formation of the sericitic vein envelopes during early hydrothermal alteration at Butte, MontanaGEOFLUIDS (ELECTRONIC), Issue 3 2002S. Geiger Abstract A reactive transport computer code has been employed to model hydrothermal alteration of a granitoid rock bordering a discrete vein channel. The model suggests that the grey sericitic and sericitic with remnant biotite alteration envelopes at the porphyry copper deposit at Butte, Montana, can be formed by a reducing, low pH, and low salinity fluid under constant temperature and pressure conditions of approximately 400 °C and less than 100 MPa during a time span of approximately 100 years or less. Hydrothermal alteration has little effect on the porosity of the host rock (Butte Quartz Monzonite), and the diffusivity of the aqueous species also changes little. A sequence of mineral reaction fronts characterizes the alteration envelopes. The biotite dissolution front occurs closest to the vein channel and marks the transition from the grey sericitic to sericitic with remnant biotite envelope. The plagioclase dissolution front occurs farthest into the matrix and marks the edge of relatively fresh Butte Quartz Monzonite. From the properties of the quasi-stationary state approximation (Lichtner 1988; Lichtner 1991), it follows that once the sequence of reaction fronts is fully established, their relative locations remain constant and the widths of the reaction zones increase with the square root of time. [source] Shear wave splitting changes associated with the 2001 volcanic eruption on Mt EtnaGEOPHYSICAL JOURNAL INTERNATIONAL, Issue 2 2006Francesca Bianco SUMMARY The time delays and polarizations of shear wave splitting above small earthquakes show variations before the 2001 July 17,August 9 2001 flank eruption on Mt Etna, Sicily. Normalized time delays, measured by singular value decomposition, show a systematic increase starting several days before the onset of the eruption. On several occasions before the eruption, the polarization directions of the shear waves at Station MNT, closest to the eruption, show 90°-flips where the faster and slower split shear waves exchange polarizations. The last 90°-flip being 5 days before the onset of the eruption. The time delays also exhibit a sudden decrease shortly before the start of the eruption suggesting the possible occurrence of a ,relaxation' phenomena, due to crack coalescence. This behaviour has many similarities to that observed before a number of earthquakes elsewhere. [source] Interfacial Strain-Induced Oxygen Disorder as the Cause of Enhanced Critical Current Density in Superconducting Thin FilmsADVANCED FUNCTIONAL MATERIALS, Issue 6 2009Stuart C. Wimbush Abstract To understand the origin of the increase in critical current density of rare earth barium cuprate superconductor thin films with decreasing thickness, a series of sub-300-nm EuBa2Cu3O7,, thin films deposited on SrTiO3 substrates are studied by X-ray diffraction and electrical transport measurements. The out-of-plane crystallographic mosaic tilt and the out-of-plane microstrain both increase with decreasing film thickness. The calculated density of c -axis threading dislocations matches the extent of the observed low-field enhancement in critical current density for fields applied parallel to c. The in-plane mosaic twist and in-plane microstrain are both around twice the magnitude of the out-of-plane values, and both increase with decreasing film thickness. The results are consistent with the observed stronger field enhancement in critical current density for fields applied parallel to ab. The lattice parameter variation with thickness is not as expected from consideration of the biaxial strain with the substrate, indicative of in-plane microstrain accommodation by oxygen disorder. Collectively, the results point to an enhancement of critical current by interfacial strain induced oxygen disorder which is greatest closest to the film-substrate interface. The findings of this study have important implications for other thin functional oxide perovskite films and nanostructures where surface and interfacial strains dominate the properties. [source] Infrastructure Investment and Rural Economic Development: An Evaluation of USDA's Broadband Loan ProgramGROWTH AND CHANGE, Issue 2 2010IVAN T. KANDILOV ABSTRACT We empirically evaluate whether participation in the U.S. Department of Agriculture's Broadband Loan Program, which began making loans in 2002, has had measurable positive impacts on zip code-level economic outcomes. Using difference in differences and propensity score matching program evaluation techniques, we find that loans made in 2002 and 2003 under the Pilot Broadband Loan Program have had a substantial positive impact on employment, annual payroll, and the number of business establishments in recipient communities. However, a more spatially disaggregated analysis reveals that the positive economic impacts of the pilot program are driven primarily by the outcomes in communities located closest to urban areas. Finally, we find no evidence that loans received as part of the current Broadband Loan Program have had a measurable positive impact on recipient communities, possibly because not enough time has elapsed for the impacts of the current Broadband Loan Program to have emerged. [source] Epoxidation of Polyunsaturated Fatty Acid Double Bonds by Dioxirane Reagent: Regioselectivity and Lipid Supramolecular OrganizationHELVETICA CHIMICA ACTA, Issue 10 2006Stanislav Abstract The use of dimethyldioxirane (DMD) as the epoxidizing agent for polyunsaturated fatty acids was investigated. With fatty acid methyl esters, this is a convenient method for avoiding acidic conditions, using different solvents, and simplifying the isolation procedures, with less contamination due to by-products. The reagent was also tested with free fatty acids in water. In this case, the supramolecular organization of fatty acids influenced the reaction outcome, and the epoxidation showed interesting regioselective features. The CC bonds closest to the aqueous-micelle interface is the most favored for the interaction with dimethyldioxirane. The preferential epoxidation of linoleic acid (=,(9Z,12Z)-octadeca-9,12-dienoic acid) to the 9,10-monoepoxy derivative was achieved, with a high yield and 65% regioselectivity. In case of arachidonic acid (=,(5Z,8Z,11Z,14Z)-eicosa-5,8,11,14-tetraenoic acid) micelles, the regioselective outcome with formation of the four possible monoepoxy isomers was studied under different conditions. It resulted to be a convenient synthesis of ,cis -5,6-epoxyeicosatrienoic acid' (=,3-[(2Z,5Z,8Z)-tetradeca-2,5,8-trienyl]oxiran-2-butanoic acid), whereas in reverse micelles, epoxidation mostly gave ,cis -14,15-epoxyeicosatrienoic acid (=,(5Z,8Z,11Z)-13-(3-pentyloxiran-2-yl)trideca-5,8,11-trienoic acid). [source] Soil frost effects on soil water and runoff dynamics along a boreal forest transect: 1.HYDROLOGICAL PROCESSES, Issue 6 2001Field investigations Abstract To determine how soil frost changes flowpaths of runoff water along a hillslope, a transect consisting of four soil profiles directed towards a small stream in a mature forest stand was investigated at Svartberget, near Vindeln in northern Sweden. Soil temperature, unfrozen water content, groundwater level and snow depth were investigated along the transect, which started at the riparian peat, and extended 30 m upslope into mineral soils. The two, more organic-rich profiles closest to the stream had higher water retention and wetter autumn conditions than the sandy mineral soils further upslope. The organic content of the soil influenced the variation in frost along the transect. The first winter (1995,96) had abnormally low snow precipitation, which gave a deep frost down to 40,80 cm, whereas the two following winters had frost depths of 5,20 cm. During winter 1995,96, the two organic profiles close to the stream had a shallower frost depth than the mineral soil profile higher upslope, but a considerably larger amount of frozen water. The fraction of water that did not freeze despite several minus degrees in the soil was 5,7 vol.% in the mineral soil and 10,15 vol.% in the organic soil. From the measurements there were no signs of perched water tables during any of the three snowmelt periods, which would have been strong evidence for changed water flowpaths due to soil frost. When shallow soil layers became saturated during snowmelt, especially in 1997 and 1998, it was because of rising groundwater levels. Several rain on frozen ground events during spring 1996 resulted in little runoff, since most of the rain either froze in the soil or filled up the soil water storage. Copyright © 2001 John Wiley & Sons, Ltd. [source] Agricultural land use and Skylark Alauda arvensis: a case study linking a habitat association model to spatially explicit change scenariosIBIS, Issue 1 2010NIGEL D. BOATMAN The development of forward scenarios is a useful method of envisaging the environmental implications of potential changes in land use, as a tool for policy development. In this paper, a spatially explicit case study is used to provide insight into the environmental impacts of Common Agricultural Policy reform on Skylark Alauda arvensis, a species which is widespread on arable farmland, breeds in crops and has declined in recent decades. A generalized linear mixed model was used to estimate Skylark breeding population densities in different crops, using survey data collected from farms in the east of England, supplemented by the literature. Model outputs were then used to predict Skylark densities in an East Anglian Joint Character Area dominated by arable cropping. Predicted densities were mapped at field level using GIS, based on actual cropping derived from Integrated Administration and Control System data collected for the administration of subsidy payments. Three future scenarios were then created, based on expert opinion of potential changes in cropping over the next 5 years, and potential changes in Skylark density mapped on the basis of the predicted changes in cropping patterns. Overall, Skylark densities were predicted to decrease on average by 11,14% under ,market-led' (increasing wheat and oilseed rape, reduced set-aside) and ,energy crop' (5% area under short rotation coppice) scenarios, but remained virtually unchanged under an ,environment-led' (diverse cropping) scenario. The ,market-led' scenario is closest to short-term agricultural trajectories, but wider cultivation of biomass energy crops as modelled under the ,energy crop' scenario could occur in the medium term if energy policies are favourable. Appropriate mitigation strategies therefore need to be implemented if a continued decline in the Skylark population on lowland arable farmland is to be averted. The results provide a readily accessible visualization of the potential impacts of land-use change for policy-makers; similar techniques could be applied to visualize effects of changes arising through other drivers, including climate change. [source] Ulcerative colitis: Correlation of the Rachmilewitz endoscopic activity index with fecal calprotectin, clinical activity, C-reactive protein, and blood leukocytesINFLAMMATORY BOWEL DISEASES, Issue 12 2009Alain M. Schoepfer MD Abstract Background: The accuracy of noninvasive markers for the detection of endoscopically active ulcerative colitis (UC) according the Rachmilewitz Score is so far unknown. The aim was to evaluate the correlation between endoscopic disease activity and fecal calprotectin, Clinical Activity Index, C-reactive protein (CRP), and blood leukocytes. Methods: UC patients undergoing colonoscopy were prospectively enrolled and scored independently according the endoscopic and clinical part of the Rachmilewitz Index. Patients and controls provided fecal and blood samples for measuring calprotectin, CRP, and leukocytes. Results: Values in UC patients (n = 134) compared to controls (n = 48): calprotectin: 396 ± 351 versus 18.1 ± 5 ,g/g, CRP 16 ± 13 versus 3 ± 2 mg/L, blood leukocytes 9.9 ± 3.5 versus 5.4 ± 1.9 g/L (all P < 0.001). Endoscopic disease activity correlated closest with calprotectin (Spearman's rank correlation coefficient r = 0.834), followed by Clinical Activity Index (r = 0.672), CRP (r = 0.503), and leukocytes (r = 0.461). Calprotectin levels were significantly lower in UC patients with inactive disease (endoscopic score 0,3, calprotectin 42 ± 38 ,g/g), compared to patients with mild (score 4,6, calprotectin 210 ± 121 ,g/g, P < 0.001), moderate (score 7,9, calprotectin 392 ± 246 ,g/g, P = 0.002), and severe disease (score 10,12, calprotectin 730 ± 291 ,g/g, P < 0.001). The overall accuracy for the detection of endoscopically active disease (score ,4) was 89% for calprotectin, 73% for Clinical Activity Index, 62% for elevated CRP, and 60% for leukocytosis. Conclusions: Fecal calprotectin correlated closest with endoscopic disease activity, followed by Clinical Activity Index, CRP, and blood leukocytes. Furthermore, fecal calprotectin was the only marker that reliably discriminated inactive from mild, moderate, and highly active disease, which emphasizes its usefulness for activity monitoring. Inflamm Bowel Dis 2009 [source] Evaluation of the monocyte counting by two automated haematology analysers compared with flow cytometryINTERNATIONAL JOURNAL OF LABORATORY HEMATOLOGY, Issue 2 2005E. GRIMALDI Summary The aim is to determine the monocyte count performance of the Bayer Diagnostics ADVIA®120 and Coulter® LH 750 automated haematology analysers and the results obtained by these two instruments were compared with those provided by Becton Dickinson FACScan flow cytometer using the combination of CD45/CD14 MoAb. Linearity and imprecision were also evaluated. The linearity of both instruments was good. Coulter® LH 750 showed better precision (4.3%) than ADVIA 120 (9.0%) both within and between batch. A significant correlation (r = 0.973) was found between the LH 750 and the flow cytometry method, while a modest one was observed between the latter and the ADVIA 120 (r = 0.880). When comparing the percentage of monocytes by means of one-way anova and Tukey test, it was found that the LH 750 provided the closest results in comparison with flow cytometry, with no statistical difference between the means (mean difference MO% = 0.6); however the difference was statistically different between the ADVIA 120 and flow cytometry (mean difference MO% = ,4.06). These data were confirmed by Altman,Bland and Deming regression analyses. [source] Urban mesh and ad hoc mesh networksINTERNATIONAL JOURNAL OF NETWORK MANAGEMENT, Issue 2 2008Anders Nilsson Plymoth Mesh networking is currently gaining much attention, within both academia and industry. Mesh networking allows cheap and fast deployment of wireless services. It is regarded as a very promising solution for urban deployment scenarios as well as for temporary emergency response situations. Another related promising field is that of ad hoc wireless networking, which consists of mobile nodes that dynamically create and maintain a network without the need for any infrastructure. We propose a solution and architecture for urban mesh ad hoc networks, a network that combines mesh networking with ad hoc networks for urban environments. We present four types of ad hoc mesh and ad hoc mesh networks. The most general one consists of mesh nodes, called mesh points (MP), that act as a type of access point for user nodes (UN). The MPs have at least two interfaces: one which is used to communicate with UNs, and one which is used to maintain the mesh access network and transport data. These two interfaces can basically use any type of technology (IEEE 802.11 a/b/g, WiMax, etc.), and for capacity reasons it is generally regarded that the best solution is to let the mesh interface operate on a separate high-capacity channel or channels. An intricate part of these types of networks are routing and location services. In our solution, UN devices operate in ad hoc mode running an ad hoc routing protocol. This allows UNs that wish to communicate to connect directly in an ad hoc manner, or through an MP. An important question is therefore whether two UNs that wish to communicate should connect through the mesh or connect directly. We show that from a capacity point of view whether a UN should route its packets to the closest available MP, or through a ad hoc network, depends on the environment the network is located, the amount traffic and the type of protocols used. Since MPs need to know where to route packets within the mesh, i.e., locating the MP closest to the destination UN, each UN run a small application that registers the UN to the mesh network. In addition to the above features we have developed a new MAC that quickly queries two candidate nodes, which picks the candidate with the currently best radio conditions. This enable nodes to cope with deep dips in signal strength due to fast fading, a well-known problem in urban environments. We show that this new protocol achieves significantly lower delays. We also show that in dense urban environments performance and battery lifetime can be improved if ad hoc technologies are used. Copyright © 2007 John Wiley & Sons, Ltd. [source] Influence of a Trout Farm on Water Quality and Macrozoobenthos Communities of the Receiving Stream (Tre,njica River, Serbia)INTERNATIONAL REVIEW OF HYDROBIOLOGY, Issue 6 2009Ivana Abstract Trout farming is constantly increasing and poses a serious threat to water quality of clean highland streams. In the present work, we investigated the influence of the farm with the highest trout production in Serbia on water quality and macrozoobenthos communities of the receiving stream, the Tre,njica River. Our study revealed that changes of water chemistry parameters downstream from the trout farm were moderate and mainly confined to the part of the watercourse closest to the wastewater outlet. Moreover, use of food with 0.8% phosphorus content was sufficient to completely eliminate soluble phosphates from water samples of the Tre,njica River. However, the changes in water chemistry were sufficient to cause significant changes in the macrozoobenthos community. These changes remained statistically significant even 500 m downstream and were lost about 3.5 km from the trout farm wastewater effluent. The trout biomass on the farm is a parameter that adequately defines the magnitude of its impact, above all the intensity of its influence on the zoobenthos community structure. The most informative parameters for estimating that influence were the Baetidae/Ephemeroptera ratio, Margelef's index and the Modified biotic index. (© 2009 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) [source] | |||||||||||||||||||||||||||||||||||||||||||