			Home About us Contact

Clonal Selection (clonal + selection)

Distribution by Scientific Domains

Life Sciences	47%
Medical Sciences	36%
Chemistry	15%

Selected Abstracts

Clonal selection in ,Uzunmusa' hazelnut

PLANT BREEDING, Issue 4 2003

Abstract Clonal selection was practised in ,Uzunmusa' hazelnut over the past 3 years (1999-2001) to select the highest quality types. Based on an initial assessment of a total of 102 types, 45 were selected for further study. The best types were selection numbers (SN) 397 and 570. The two selected clones have very good characteristics and seem to be superior to the standard clone. The clones had a higher kernel percentage (62.72%), a higher number of nuts per cluster (5.5), thinner shells (0.75 mm) and heavier nuts (2.34 g). On the other hand, the clones seem to be very suitable for the nut industry because of their oil content and size. These types have very thin shells which are suitable for in-shell market. [source]

Clone differentiation and varietal identification by means of SSR, AFLP, SAMPL and M-AFLP in order to assess the clonal selection of grapevine: the case study of Manto Negro, Callet and Moll, autochthonous cultivars of Majorca

ANNALS OF APPLIED BIOLOGY, Issue 2 2010
E. Cretazzo
Clonal selection is the most worldwide spreading method to improve the performance of wine grapevine (Vitis vinifera) cultivars. In the special case of autochthonous varieties with only local interest, such as Manto Negro, Callet and Moll in Majorca (Spain), good knowledge of their genotypic resources is helpful to assess the development of viticultural and enological potentialities. In this study, 94 vines (including Manto Negro, Callet, Moll and wrongly identified samples) were analysed by means of genetic markers. Several varietal identification mistakes related to the clonal selection in Majorca were detected by the amplification of 33 simple sequence repeats (SSRs) or microsatellite loci, mainly because of the close genetic relationships between Manto Negro, Callet, Moll and other varieties. A very low degree of intravarietal genetic diversity, possibly related to high incidence of virus infections, was shown in all three varieties. However, analysis by amplified fragment length polymorphism (AFLP), selective amplification of microsatellite loci (SAMPL) and microsatellite-amplified fragment length polymorphism (M-AFLP) was suitable for clone genetic discrimination. More than 900 scorable bands were obtained by nine primer combinations. The most efficient system to detect intravarietal genetic differences was M-AFLP, which generated the highest number of polymorphic bands. The use of these markers allowed clustering vines in homogeneous groups, providing essential information about sanitation strategies in order to obtain certified propagation material. [source]

A molecular analysis of biclonal follicular lymphoma: further evidence for bone marrow origin and clonal selection

EUROPEAN JOURNAL OF HAEMATOLOGY, Issue 5 2009
Yuichi Nakamura
Abstract We report a follicular lymphoma (FL) case presenting the coexistence of two tumor cell subpopulations in lymph node (LN) and bone marrow (BM), which exhibited an inverse pattern of immunoglobulin light (IgL) chain gene rearrangement and expression: Ig,,,+ in LN and Ig,+,, in BM. These tumor clones shared an identical BCL2-IgH recombination, accompanying t(14;18)(q32;q21) translocation, and an identical variable, diversity and joining segments joining with clone-specific VH somatic hypermutations on the untranslocated IgH allele. Our study provides further evidence that FL clones, originating from common progenitor cells, can be developed independently at different sites and with different IgL expression after immune selection. [source]

Mutational inactivation of TGFBR2 in microsatellite unstable colon cancer arises from the cooperation of genomic instability and the clonal outgrowth of transforming growth factor , resistant cells

GENES, CHROMOSOMES AND CANCER, Issue 2 2008
Swati Biswas
The mutational inactivation of transforming growth factor , receptor type II (TGFBR2) occurs in ,30% of colon cancers and promotes the formation of colon cancer by inhibiting the tumor suppressor activity of the TGFB signaling pathway. TGFBR2 mutations occur in >90% of microsatellite unstable (MSI) colon cancers and affect a polyadenine tract in exon 3 of TGFBR2, called BAT-RII, which is vulnerable to mutation in the setting of DNA mismatch repair (MMR) system deficiency. In light of the vulnerable nature of the BAT-RII tract in the setting of MMR inactivation and the favorable effects of TGFBR2 inactivation in colon cancer, analysis of TGFBR2 inactivation provides an opportunity to assess the roles of genomic instability vs. clonal selection in cells acquiring TGFBR2 BAT-RII tract mutations in MSI colon cancer formation. The contribution of genomic instability and/or clonal evolution to the mutational inactivation of TGBFR2 in MSI colon cancers has not been studied in a systematic way that would allow a determination of the relative contribution of these two mechanisms in the formation of MSI colon cancer. It has not been demonstrated whether the BAT-RII tract mutations are strictly a consequence of the BAT-RII region being hypermutable in the setting of MMR deficiency or if the mutations are rather a consequence of clonal selection pressure against the TGFB receptor. Through the use of defined cell line systems, we show that both genomic instability and clonal selection of TGFB resistant cells contribute to the high frequency of TGFBR2 mutations in MSI colon cancer. © 2007 Wiley-Liss, Inc. [source]

Increasing genomic instability during premalignant neoplastic progression revealed through high resolution array-CGH

GENES, CHROMOSOMES AND CANCER, Issue 6 2007
Lisa A. Lai
Chromosomal instability is regarded as an underlying mechanism of neoplastic progression, integral to the clonal selection and evolution that leads to cancer. We evaluated chromosomal instability in premalignant Barrett's esophagus tissue using high resolution Affymetrix mapping 100K SNP arrays as patients progressed through three molecular stages of disease,CDKN2ALOH only, CDKN2ALOH/TP53LOH, and CDKN2ALOH/TP53LOH with aneuploidy. Within individuals over time, we observed increases in both numbers and sizes of regions of LOH or copy number change. In the earliest CDKN2ALOH only samples, we detected few regions with both copy change and LOH, whereas copy loss and LOH were highly correlated in more advanced samples. These data indicate that genomic instability increases in severity and changes character during neoplastic progression. In addition, distinct patterns of clonal evolution could be discerned within a segment of Barrett's esophagus. Overall, this study illustrates that pre-malignant disease can be associated with extensive instability and clonal dynamics that evolve from an initial stage characterized by small recombination-based alterations to one with larger copy change events likely associated with mitotic instability. © 2007 Wiley-Liss, Inc. [source]

Putting flesh and polish on autoimmune hepatitis and moving the disease of exclusion to inclusion,

HEPATOLOGY, Issue 4 2010
Albert J. Czaja
Autoimmune hepatitis emerged during an era when concepts of neonatal immune tolerance, clonal selection of lymphocytes, and "forbidden clones" of activated immune cells were forming. The diagnosis had to be deduced from circumstantial evidence and by exclusion of other conditions. The goals of this review are to demonstrate how a clinician nonscientist can contribute to the maturation of autoimmune hepatitis and to illustrate the principles of clinical investigation that can be applied broadly to other projects. Autoimmune hepatitis initially had to be distinguished from other diseases, and improvements in the tests for viral and immune markers were instrumental in this regard. Diversification of the clinical phenotype to accommodate acute severe, asymptomatic, elderly, and variant forms enhanced the pertinence of the disease, and the formation of the International Autoimmune Hepatitis Group standardized the diagnosis, interconnected investigators, and promoted global acceptance of the condition. Subsequent studies refined current corticosteroid-based therapies, identified prognostic markers, assessed genetic predispositions, explored new pharmacological agents, and forecast the emergence of cellular and molecular interventions. Good fortune, stimulating mentors, career dedication, practical goal selection, protocol compliance, compulsive record keeping, personal resilience, and strong collaborations were the bases for progress. Autoimmune hepatitis exemplifies an evolutionary process in the science of autoimmunity and the people committed to its study. Lessons derived from this experience can be far-reaching. (HEPATOLOGY 2010;52:1177-1184) [source]

Divide and conquer: the importance of cell division in regulating B-cell responses

IMMUNOLOGY, Issue 4 2004
Stuart G. Tangye
Summary Proliferation is an essential characteristic of clonal selection and is required for the expansion of antigen reactive clones leading to the development of antibody of different isotypes and memory cells. New data for mouse and human B cells point to an important role for division in regulating isotype class and in optimizing development of protective immunity by the regulated entry of cells to the plasma cell lineage. [source]

Clonal erosion and genetic drift in cyclical parthenogens , the interplay between neutral and selective processes

JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 5 2010
J. VANOVERBEKE
Abstract The occurrence of alternating phases of clonal and sexual reproduction may strongly impact the interplay between neutral and selective genetic variation in populations. Using a physiologically structured model of the life history of Daphnia, we investigated to what extent clonal erosion associated with selection during the clonal phase affects the genetic structure as observed by neutral markers. Incorporating conservative levels of quantitative genetic variation at 11 physiological and life history traits induces strong clonal erosion, reducing clonal diversity (CD) near the end of the simulations (1000 days) to a level between 1 and 5, even in habitats with high initial CD (108 clones). This strong clonal erosion caused by selection can result in reduced genetic diversity, significant excess of heterozygotes and significant genetic differentiation between populations as observed by neutral markers. Our results indicate that, especially in relatively small habitats, clonal selection may strongly impact the genetic structure and may contribute to the often observed high level of neutral genetic differentiation among natural populations of cyclical parthenogens. [source]

Temporal dynamics of genotypic diversity reveal strong clonal selection in the aphid Myzus persicae

JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 1 2006
C. VORBURGER
Abstract Parthenogenetic organisms often harbour substantial genotypic diversity. This diversity may be the result of recurrent formations of new clones, or it may be maintained by environmental heterogeneity acting on ecological differences among clones. In aphids, both processes may be important because obligate and cyclical parthenogens can form mixed populations. Using microsatellites, I analysed the temporal dynamics of clonal diversity in such a population of the aphid Myzus persicae over a 1-year period. The frequency distribution of clonal genotypes was very skewed, with many rare and few common clones. The relative frequencies of common clones underwent strong and rapid changes indicative of intense clonal selection. Differences in their host associations suggest that these shifts may partly be caused by changes in the abundance of annual host plants. Other selective factors of potential importance are also discussed. New, sexually produced genotypes made a minor contribution to clonal diversity, consistent with the observed heterozygote excess characteristic of predominantly asexual populations in M. persicae. [source]

A novel mammalian display system for the selection of protein,protein interactions by decoy receptor engagement

JOURNAL OF MOLECULAR RECOGNITION, Issue 4 2004
Peter Ellmark
Abstract The emerging field of proteomics has created a need for new high-throughput methodologies for the analysis of gene products. An attractive approach is to develop systems that allow for clonal selection of interacting protein pairs from large molecular libraries. In this study, we have characterized a novel approach for identification and selection of protein,protein interactions, denoted SPIRE (selection of protein interactions by receptor engagement), which is based on a mammalian expression system. We have demonstrated proof of concept by creating a general plasma membrane bound decoy receptor, by displaying a protein or a peptide genetically fused to a trunctated version of the CD40 molecule. When this decoy receptor is engaged by a ligand to the displayed protein/peptide, the receptor expressing cell is rescued from apoptosis. To design a high-throughput system with a highly parallel capacity, we utilized the B cell line WEHI-231, as carrier of the decoy receptor. One specific peptide-displaying cell could be identified and amplified, based on a specific receptor engagement, in a background of 12,500 wild-type cells after four selections. This demonstrates that the approach may serve as a tool in post-genomic research for identifying protein,protein interactions, without prior knowledge of either component. Copyright © 2004 John Wiley & Sons, Ltd. [source]

Clone differentiation and varietal identification by means of SSR, AFLP, SAMPL and M-AFLP in order to assess the clonal selection of grapevine: the case study of Manto Negro, Callet and Moll, autochthonous cultivars of Majorca

A new fault detection method based on artificial immune systems

ASIA-PACIFIC JOURNAL OF CHEMICAL ENGINEERING, Issue 6 2008
Cunjie Wang
Abstract A new fault detection method with a continuous learning feature for a complicated process is proposed based on the concept of artificial immune systems (AIS). Both the negative and the clonal selections are adopted in the method. The real-valued negative selection algorithm (RNSA) is utilized to generate fault detectors. When the detector set is used to perform the fault detection, a clonal selection is employed to update the fault detector set. The proposed method is applied to the Tennessee Eastman (TE) process. The simulation results show that the performance of the proposed method is superior to those of both classical principal component analysis (PCA) and negative selection algorithm. Copyright © 2008 Curtin University of Technology and John Wiley & Sons, Ltd. [source]

Twenty-four-well plate miniature bioreactor high-throughput system: Assessment for microbial cultivations

BIOTECHNOLOGY & BIOENGINEERING, Issue 5 2007
Kevin Isett
Abstract High-throughput (HT) miniature bioreactor (MBR) systems are becoming increasingly important to rapidly perform clonal selection, strain improvement screening, and culture media and process optimization. This study documents the initial assessment of a 24-well plate MBR system, Micro (µ)-24, for Saccharomyces cerevisiae, Escherichia coli, and Pichia pastoris cultivations. MBR batch cultivations for S. cerevisiae demonstrated comparable growth to a 20-L stirred tank bioreactor fermentation by off-line metabolite and biomass analyses. High inter-well reproducibility was observed for process parameters such as on-line temperature, pH and dissolved oxygen. E. coli and P. pastoris strains were also tested in this MBR system under conditions of rapidly increasing oxygen uptake rates (OUR) and at high cell densities, thus requiring the utilization of gas blending for dissolved oxygen and pH control. The E. coli batch fermentations challenged the dissolved oxygen and pH control loop as demonstrated by process excursions below the control set-point during the exponential growth phase on dextrose. For P. pastoris fermentations, the µ-24 was capable of controlling dissolved oxygen, pH, and temperature under batch and fed-batch conditions with subsequent substrate shot feeds and supported biomass levels of 278 g/L wet cell weight (wcw). The average oxygen mass transfer coefficient per non-sparged well were measured at 32.6,±,2.4, 46.5,±,4.6, 51.6,±,3.7, and 56.1,±,1.6 h,1 at the operating conditions of 500, 600, 700, and 800 rpm shaking speed, respectively. The mixing times measured for the agitation settings 500 and 800 rpm were below 5 and 1 s, respectively. Biotechnol. Bioeng. 2007;98: 1017,1028. © 2007 Wiley Periodicals, Inc. [source]

4251: General principles of autoinflammation and autoimmunity

ACTA OPHTHALMOLOGICA, Issue 2010
F WILLERMAIN
Purpose In this talk, the definition and the molecular mechanisms of autoinflammation and autoimmunity will be introduced. Methods Defense against invading microorganisms is one of the main challenges of life. Very early in the evolution, a series of germline-encoded protein capable to detect pathogen associated molecular patterns (PAMP) have evolved. PAMPs include toll-like receptors, NOD like receptors and C-type lectin. Their activation converges to the rapid stimulation of proinflammatory pathways. Results PAMPs are at the basis of the innate immune response which represent the first line of defense and will shape the nature of the adaptive immune system. The latter is mediated by clonal selection and expansion of antigen specific T and B lymphocytes. It is now well described that dysregulations of those two arms of the immune system are associated with distinct clinical diseases. Conclusion Various anomalies of the innate immune system have been found in a series of disease grouped under the name autoinflammatory syndromes. This term highlight the distinction between those diseases and classical autoimmune diseases, characterized by an abnormal adaptive immune response with the presence of autoantibodies and/or autoreactive T cells. [source]