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Clonal Diversity (clonal + diversity)

Distribution by Scientific Domains

Life Sciences	85%
3 Other Domains	15%

Distribution within Life Sciences

Evolution	70%
Plant Science	24%

Selected Abstracts

Clonal diversity and subpopulation structure in central European relict populations of Saxifraga paniculataMill. (Saxifragaceae)

FEDDES REPERTORIUM, Issue 3-4 2004
C. Reisch
Saxifraga paniculata is a rare and endangered glacial relict in central Europe. It shows high clonal reproduction. In this study, we analysed the clonal diversity and the subpopulation structure of three populations from the species main distribution area in Germany outside of the Alps (Swabian Alb, Black Forest, Nahe Mountains). We used RAPD analysis to detect the genetic variation in S. paniculata and found high levels of clonal diversity. The percentage of distinguishable genotypes (PD) within populations of S. paniculata was 1.0 and even spatially well defined mats of rosettes consisted of several genotypes. In a cluster analysis, the investigated populations were clearly separated from each other. However, we detected no genetic differentiation among subpopulations. We ascribe the high level of genotypic variability to the species' mixed mating system, which creates and maintains high levels of genetic diversity within the populations of S. paniculata. Clonal reproduction seems, meanwhile, to be of secondary importance for the propagation of the species. (© 2004 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim) Klonale Diversität und Subpopulationsstruktur in mitteleuropäischen Reliktpopulationen von Saxifraga paniculataMill. (Saxifragaceae) Saxifraga paniculata ist in Mitteleuropa ein seltenes und gefährdetes Glazialrelikt, das sich durch die Fähigkeit zu starker klonaler Reproduktion auszeichnet. Die vorliegende Arbeit befasst sich mit der klonalen Diversität und der Subpopulationsstruktur von drei Populationen aus dem Hauptverbreitungsgebiet der Art außerhalb der Alpen (Schwäbische Alb, Schwarzwald, Nahe-Bergland). Die genetische Variabilität wurde mittels RAPD-Analyse untersucht. Dabei konnte ein hohes Maß an klonaler Diversität festgestellt werden. Der Prozentsatz unterscheidbarer Genotypen innerhalb einer Population (PD) betrug 1.0 und selbst größere Matten, deren Entstehung nach rein morphologischer Einschätzung auf klonalem Wachstum beruhen müsste, bestanden aus mehreren Genotypen. In einer Clusteranalyse unterschieden sich die analysierten Populationen klar voneinander. Unterschiede zwischen Subpopulationen konnten jedoch nicht nachgewiesen werden. Das hohe Ausmaß an genetischer Diversität kann dem "mixed mating system" der Art zugeschrieben werden, das genetische Variabilität schafft und erhält. Klonales Wachstum scheint währenddessen eher von zweitrangiger Bedeutung für die Vermehrung der Art zu sein. [source]

Grain aphid population structure: no effect of fungal infections in a 2-year field study in Denmark

AGRICULTURAL AND FOREST ENTOMOLOGY, Issue 3 2008
A. B. Jensen
Abstract 1,Sitobion avenae (F.) is a serious pest in Danish cereal crops. To understand the population genetic structure, aphids were sampled in seven different winter wheat (Triticum sativum Lamarck) fields throughout Denmark. The aphids were genotyped with seven microsatellite markers. In total, 2075 aphids were collected and 1203 of these were genotyped. 2,The Danish S. avenae populations displayed very high genotypic diversity, high percentages of unique genotypes and low linkage disequilibria; this is likely to be a result of genetic recombination encompassed by their holocyclic lifestyle. The populations showed very limited differentiation and no sign of isolation by distance. Almost all the genetic variation was ascribed within the populations rather than between populations, probably due to a high migration rate at approximate 10% per generation. 3,Seasonal changes in clonal diversity and distribution of asexual summer generations of S. avenae within the infestation period in a single winter wheat field were followed over two consecutive years by weekly sampling from 60 plots each of 20 × 20 m. Clonal diversity was high in all samples with no dominant clonal lineages and no significant difference in the genotypic diversity between weeks or between years. However, a temporal genetic differentiation effect, throughout the infestation, suggests that selective factors or high temporal migration play an important role in shaping the genetic structure S. avenae. 4,Analyses of fungal infected and uninfected aphids were performed to test whether some clonal linage were more often infected by fungi from the Entomophthorales under field conditions. In total, 54 progeny from aphids with Entomophthorales were genotyped and compared with 422 uninfected aphid genotypes. The Entomophthorales-infected aphid genotypes did not cluster out together, suggesting that these fungal pathogens did not affect the population differentiation or clonal distribution of S. avenae in a Danish agroecosystem. 5,Our findings indicate that S. avenae populations can be controlled using conservation biological control [source]

Local forest environment largely affects below-ground growth, clonal diversity and fine-scale spatial genetic structure in the temperate deciduous forest herb Paris quadrifolia

MOLECULAR ECOLOGY, Issue 14 2005
HANS JACQUEMYN
Abstract Paris quadrifolia (herb Paris) is a long-lived, clonal woodland herb that shows strong differences in local population size and shoot density along an environmental gradient of soil and light conditions. This environmentally based structuring may be mediated by differences in clonal growth and seedling recruitment through sexual reproduction. To study the interrelationship between environmental conditions and spatial patterns of clonal growth, the spatial genetic structure of four P. quadrifolia populations growing in strongly contrasting sites was determined. In the first place, plant excavations were performed in order to (i) determine differences in below-ground growth of genets, (ii) investigate connectedness of ramets and (iii) determine total genet size. Although no differences in internode length were found among sites, clones in moist sites were much smaller (genets usually consisted of 1,3 interconnected shoots, most of them flowering) than genets in dry sites, which consisted of up to 15 interconnected shoots, the majority of which were vegetative. Further, amplified fragment length polymorphism (AFLP) markers were used. Clonal diversity was higher in populations located in moist and productive ash,poplar forests compared to those found in drier and less productive mixed forest sites (G/N: 0.27 and 0.14 and Simpson's D: 0.84 and 0.75, respectively). Patterns of spatial population genetic structure under dry conditions revealed several large clones dominating the entire population, whereas in moist sites many small genets were observed. Nevertheless, strong spatial genetic structure of the genet population was observed. Our results clearly demonstrate that patterns of clonal diversity and growth form of P. quadrifolia differ among environments. Limited seedling recruitment and large clone sizes due to higher connectedness of ramets explain the low clonal diversity in dry sites. In moist sites, higher levels of clonal diversity and small clone sizes indicate repeated seedling recruitment, whereas strong spatial genetic structure suggests limited seed dispersal within populations. [source]

Clonal diversity and genetic differentiation in Ilex leucoclada M. patches in an old-growth beech forest

MOLECULAR ECOLOGY, Issue 4 2003
T. Torimaru
Abstract We investigated clonal diversity within patches of Ilex leucoclada and genetic variation within and among patches using random amplified polymorphic DNA (RAPD) markers in a 1-ha plot within an old-growth beech forest. We found 38 patches that exhibited a clumped distribution in the middle of the plot. We identified a total of 166 RAPD phenotypes among the 215 stems sampled from 27 patches that were completely within the plot. The population showed high clonal diversity within patches (mean number of genets relative to number of stems = 0.79; mean Simpson's D= 0.89). Variation in RAPD phenotypes among patches was highly significant (,ST in the molecular variance analysis = 0.316, P < 0.001), indicating genetic differentiation among patches. Pairwise genetic distances, ,ST, among patches did not correlate with geographical distances among patches. The cluster analysis based on the genetic distances showed few clear clusters of patches, indicating no spatial genetic structure among patches. High levels of clonal diversity both within patches and within the population may be explained by multiple founders, seedling recruitment during patch-formation, and somatic mutation. The significant genetic differentiation among patches may be caused by separate founding events and/or kin structuring within patches. [source]

Clonal diversity and subpopulation structure in central European relict populations of Saxifraga paniculataMill. (Saxifragaceae)

Investigation of the genetic diversity among isolates of Salmonella enterica serovar Dublin from animals and humans from England, Wales and Ireland

JOURNAL OF APPLIED MICROBIOLOGY, Issue 5 2002
E. Liebana
Aims: To assess the degree of genetic diversity among animal Salmonella Dublin UK isolates, and to compare it with the genetic diversity found among human isolates from the same time period. Methods and Results: One hundred isolates (50 human and 50 animal) were typed using plasmid profiling, XbaI-pulsed field gel electrophoresis (PFGE) and PstI- SphI ribotyping. Antimicrobial resistance data to 16 antibiotics was presented, and the presence of class-I integrons was investigated by real-time PCR. Seven different plasmid profiles, 19 ribotypes and 21 PFGE types were detected. A combination of the three methods allowed clear differentiation of 43 clones or strains. Eighteen isolates were resistant to at least one antimicrobial; five of them were multi-resistant and of these, only three presented class I integrons. Conclusions: Ribotyping data suggest the existence of at least three very different clonal lines; the same distribution in well-defined groups was not evident from the PFGE data. The existence of a variety of clones in both animals and humans has been demonstrated. A few prevalent clones seem to be widely disseminated among different animal species and show a diverse geographical and temporal distribution. The same clones were found in animals and humans, which may infer that both farm and pet animals may act as potential vehicles of infection for humans. Some other clones seem to be less widely distributed. Clustering analysis of genomic fingerprints of Salmonella Dublin and Salm. Enteritidis isolates confirms the existence of a close phylogenetic relationship between both serotypes. Significance and Impact of the Study: This paper describes the utility of a multiple genetic typing approach for Salm. Dublin. It gives useful information on clonal diversity among human and animal isolates. [source]

Clonal erosion and genetic drift in cyclical parthenogens , the interplay between neutral and selective processes

JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 5 2010
J. VANOVERBEKE
Abstract The occurrence of alternating phases of clonal and sexual reproduction may strongly impact the interplay between neutral and selective genetic variation in populations. Using a physiologically structured model of the life history of Daphnia, we investigated to what extent clonal erosion associated with selection during the clonal phase affects the genetic structure as observed by neutral markers. Incorporating conservative levels of quantitative genetic variation at 11 physiological and life history traits induces strong clonal erosion, reducing clonal diversity (CD) near the end of the simulations (1000 days) to a level between 1 and 5, even in habitats with high initial CD (108 clones). This strong clonal erosion caused by selection can result in reduced genetic diversity, significant excess of heterozygotes and significant genetic differentiation between populations as observed by neutral markers. Our results indicate that, especially in relatively small habitats, clonal selection may strongly impact the genetic structure and may contribute to the often observed high level of neutral genetic differentiation among natural populations of cyclical parthenogens. [source]

Temporal dynamics of genotypic diversity reveal strong clonal selection in the aphid Myzus persicae

JOURNAL OF EVOLUTIONARY BIOLOGY, Issue 1 2006
C. VORBURGER
Abstract Parthenogenetic organisms often harbour substantial genotypic diversity. This diversity may be the result of recurrent formations of new clones, or it may be maintained by environmental heterogeneity acting on ecological differences among clones. In aphids, both processes may be important because obligate and cyclical parthenogens can form mixed populations. Using microsatellites, I analysed the temporal dynamics of clonal diversity in such a population of the aphid Myzus persicae over a 1-year period. The frequency distribution of clonal genotypes was very skewed, with many rare and few common clones. The relative frequencies of common clones underwent strong and rapid changes indicative of intense clonal selection. Differences in their host associations suggest that these shifts may partly be caused by changes in the abundance of annual host plants. Other selective factors of potential importance are also discussed. New, sexually produced genotypes made a minor contribution to clonal diversity, consistent with the observed heterozygote excess characteristic of predominantly asexual populations in M. persicae. [source]

Grain aphid population structure: no effect of fungal infections in a 2-year field study in Denmark

Discovery of a large clonal patch of a social amoeba: implications for social evolution

MOLECULAR ECOLOGY, Issue 6 2009
OWEN M GILBERT
Abstract Studies of genetic population structures of clonally reproducing macro-organisms have revealed large areas where only one clone is found. These areas, referred to as clonal patches, have not been shown to occur in free-living microbes until now. In free-living microbes, high genetic diversity at local scales is usually maintained by high rates of dispersal. We report, however, a highly dense, 12-m clonal patch of the social amoeba Dictyostelium discoideum in a cattle pasture located in a Texas Gulf Coast prairie. We confirm the presence of only one clone by the analysis of 65 samples and amplification of 10 polymorphic microsatellite loci. Samplings of additional cattle pastures nearby showed higher clonal diversity, but with a density of D. discoideum isolates lower than in the clonal patch. These findings show that high rates of microbial dispersal do not always produce genetic diversity at local scales, contrary to the findings of previous studies. The existence of clonal patches may be particularly important for microbial social evolution. [source]

Patterns, sources and ecological implications of clonal diversity in apomictic Ranunculus carpaticola (Ranunculus auricomus complex, Ranunculaceae)

MOLECULAR ECOLOGY, Issue 4 2006
O. PAUN
Abstract Sources and implications of genetic diversity in agamic complexes are still under debate. Population studies (amplified fragment length polymorphisms, microsatellites) and karyological methods (Feulgen DNA image densitometry and flow cytometry) were employed for characterization of genetic diversity and ploidy levels of 10 populations of Ranunculus carpaticola in central Slovakia. Whereas two diploid populations showed high levels of genetic diversity, as expected for sexual reproduction, eight populations are hexaploid and harbour lower degrees of genotypic variation, but maintain high levels of heterozygosity at many loci, as is typical for apomicts. Polyploid populations consist either of a single AFLP genotype or of one dominant and a few deviating genotypes. genotype/genodive and character incompatibility analyses suggest that genotypic variation within apomictic populations is caused by mutations, but in one population probably also by recombination. This local facultative sexuality may have a great impact on regional genotypic diversity. Two microsatellite loci discriminated genotypes separated by the accumulation of few mutations (,clone mates') within each AFLP clone. Genetic diversity is partitioned mainly among apomictic populations and is not geographically structured, which may be due to facultative sexuality and/or multiple colonizations of sites by different clones. Habitat differentiation and a tendency to inhabit artificial meadows is more pronounced in apomictic than in sexual populations. We hypothesize that maintenance of genetic diversity and superior colonizing abilities of apomicts in temporally and spatially heterogeneous environments are important for their distributional success. [source]

Local forest environment largely affects below-ground growth, clonal diversity and fine-scale spatial genetic structure in the temperate deciduous forest herb Paris quadrifolia

Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum brightwellii

MOLECULAR ECOLOGY, Issue 6 2005
TATIANA A. RYNEARSON
Abstract Maintenance of genetic diversity in eukaryotic microbes reflects a synergism between reproductive mode (asexual vs. sexual) and environmental conditions. We determined clonal diversity in field samples of the planktonic marine diatom, Ditylum brightwellii, during a bloom, when cell number increased by seven-fold because of rapid asexual division. The genotypes at three microsatellite loci were determined for 607 individual cell lines isolated during the 11 days of sampling. Genetic diversity remained high during the bloom and 87% of the cells sampled each day were genetically distinct. Sixty-nine clonal lineages were sampled two or more times during the bloom, and two clones were sampled seven times. Based on the frequency of resampled clonal lineages, capture,recapture statistics were used to determine that at least 2400 genetically distinct clonal lineages comprised the bloom population. No significant differences in microsatellite allele frequencies were observed among daily samples indicating that the bloom was comprised of a single population. No sexual stages were observed, although linkage equilibrium at two loci, high levels of allelic and genotypic diversity, and heterozygote deficiencies were all indicative of past sexual reproduction events. At the height of the bloom, a windstorm diluted cell numbers by 51% and coincided with a change in the frequency distribution of some resampled lineages. The extensive clonal diversity generated through past sexual reproduction events coupled with frequent environmental changes appear to prevent individual clonal lineages from becoming numerically dominant, maintaining genetic diversity and the adaptive potential of the population. [source]

Clonal diversity and genetic differentiation in Ilex leucoclada M. patches in an old-growth beech forest

Genetic variation and clonal diversity in four clonal sedges (Carex) along the Arctic coast of Eurasia

MOLECULAR ECOLOGY, Issue 2 2001
Anna Stenström
Abstract We studied the structure of genetic variation (at both ramet- and genet-level) and clonal diversity within and among populations in the four closely related arctic clonal sedges Carex bigelowii, C. ensifolia, C. lugens and C. stans by use of allozyme markers. Compared to other sedges and arctic plants, the studied taxa all had high levels of genetic variation, both within populations and taxa. These taxa contained most of the total gene diversity (HT) within populations and a small part of the diversity among populations (GST ranged 0.05,0.43). Carex bigelowii had genetic variation (HS = 0.173, mean for populations) at a comparable level to other outbreeding arctic plants and to other widespread, rhizomatous and mainly outbreeding Carex species. In contrast, C. ensifolia (HS = 0.335), C. lugens (HS = 0.339) and C. stans (HS = 0.294) had within-population variations that were higher than in most other studied Carex species and for arctic plants in general. Genetic variation was not related to any tested environmental variable, but it was lower in areas deglaciated only 10 000 years bp compared to areas deglaciated 60 000 years bp or not glaciated at all during the Weichselian. All the populations were multiclonal, except for two populations of C. stans that were monoclonal. In contrast to genetic variation, clonal diversity decreased with latitude and did not differ between areas with different times of deglaciation. In accordance with previous studies, C. bigelowii and C. lugens were found to be outbreeding, while C. ensifolia and C. stans had mixed mating systems. [source]

A microsatellite-based estimation of clonal diversity and population subdivision in Zostera marina, a marine flowering plant

MOLECULAR ECOLOGY, Issue 2 2000
T. B. H. Reusch
Abstract We examined the genetic population structure in eelgrass (Zostera marina L.), the dominant seagrass species of the northern hemisphere, over spatial scales from 12 km to 10 000 km using the polymorphism of DNA microsatellites. Twelve populations were genotyped for six loci representing a total of 67 alleles. Populations sampled included the North Sea (four), the Baltic Sea (three), the western Atlantic (two), the eastern Atlantic (one), the Mediterranean Sea (one) and the eastern Pacific (one). Microsatellites revealed substantial genetic variation in a plant group with low allozyme diversity. Average expected heterozygosities per population (monoclonal populations excluded) ranged from 0.32 to 0.61 (mean = 0.48) and allele numbers varied between 3.3 and 6.7 (mean = 4.7). Using the expected frequency of multilocus genotypes within populations, we distinguished ramets from genetic individuals (i.e. equivalent to clones). Differences in clonal diversity among populations varied widely and ranged from maximal diversity (i.e. all ramets with different genotype) to near or total monoclonality (two populations). All multiple sampled ramets were excluded from further analysis of genetic differentiation within and between populations. All but one population were in Hardy,Weinberg equilibrium, indicating that Zostera marina is predominantly outcrossing. From a regression of the pairwise population differentiation with distance, we obtained an effective population size Ne of 2440,5000. The overall genetic differentiation among eelgrass populations, assessed as , (a standardized estimate of Slatkin's RST) was 0.384 (95% CI 0.34,0.44, P < 0.001). Genetic differentiation was weak among three North Sea populations situated 12,42 km distant from one another, suggesting that tidal currents result in an efficient exchange of propagules. In the Baltic and in Nova Scotia, a small but statistically significant fraction of the genetic variance was distributed between populations (, = 0.029,0.053) at scales of 15,35 km. Pairwise genetic differentiation between European populations were correlated with distance between populations up to a distance of 4500 km (linear differentiation-by-distance model, R2 = 0.67). In contrast, both Nova Scotian populations were genetically much closer to North Sea and Baltic populations than expected from their geographical distance (pairwise , = 0.03,0.08, P < 0.01). A biogeographical cluster of Canadian with Baltic/North Sea populations was also supported using a neighbour-joining tree based on Cavalli,Sforza's chord distance. Relatedness between populations may be very different from predictions based on geographical vicinity. [source]

Role of sexual reproduction in the spread of an invasive clonal plant Solidago canadensis revealed using intersimple sequence repeat markers

PLANT SPECIES BIOLOGY, Issue 1 2006
MEI DONG
Abstract Invasive species, second only to habitat loss as a cause of biodiversity loss, pose serious threats to native biodiversity and ecosystems. Little is known about the mechanisms that some exotic plants use to become invasive in their non-native ranges. Solidago canadensis, native to North America, was intentionally introduced to many countries where it has become an invasive plant. To understand the roles that reproductive mode plays in successful invasion of exotic plants, and the relative importance of sexual reproduction and clonal growth, the genetic diversity and clonal structure of two S. canadensis populations from Shanghai, China were investigated using intersimple sequence repeats. Samples were collected in a grid pattern with intervals of 2 m among adjacent individuals within the studied area (approximately 30 m × 30 m) for each population. Results showed that the percentages of polymorphic loci for the two populations were 97.9% and 96.5% and clonal diversity measured using the Simpson Diversity Index was 1.00 for both populations. No identical genotypes were found among the analyzed samples. It is suggested from this study that sexual reproduction facilitates the establishment of new S. canadensis populations, whereas clonal expansion maintains and enlarges the established populations. Thus, limiting sexual reproduction of S. canadensis may effectively control the invasion of this species. [source]

Clonal genetic diversity and populational genetic differentiation in Phragmites australis distributed in the Songnen Prairie in northeast China as revealed by amplified fragment length polymorphism and sequence-specific amplification polymorphism molecular markers

ANNALS OF APPLIED BIOLOGY, Issue 1 2009
M. Li
Abstract Genetic variation within and between four naturally occurring Phragmites australis land populations, DBS, QG, SS1 and SS2 (named after locality), which colonise distinct habitats (different edaphic conditions) in the Songnen Prairie in northeast China, were investigated by amplified fragment length polymorphism (AFLP) and sequence-specific amplification polymorphism (S-SAP) markers. It was found that the selected primer combinations of both markers were highly efficient in revealing the inter-clonal genetic diversity and inter-populational genetic differentiation in P. australis from a molecular ecological perspective. Cluster analysis categorised the plants into distinct groups (DBS, QG and SS groups), which were in line with their localities, albeit the two SS group populations (SS1 and SS2) showed a lower degree of inter-populational differentiation. These results were strongly supported by multiple statistical analysis including Mantel's test, principal coordinate analysis, allocation test and analysis of molecular variance, which further suggested that gene flow, genetic drift and differences in as yet unidentified edaphic factors may all underpin the inter-clonal genetic diversity and inter-populational differentiation at the nucleotide sequence level. Analysis of intra-population clonal diversity also revealed that the QG population harboured a strikingly lower amount of within-population variation compared with those of the other three populations, presumably being caused by genetic drift and followed by physical and/or biological isolation. Homology analysis of a subset of population-specific or population-private AFLP and S-SAP bands suggested that regulatory genes and retroelements might play important roles in the ecological adaptation and differentiation of the P. australis populations. Possible causes for and implications of the extensive genetic variability in P. australis were discussed for its future genetic conservation and use in ecological revegetation. [source]

Influence of biofilm formation in the susceptibility of Pseudomonas aeruginosa from Brazilian patients with cystic fibrosis

APMIS, Issue 8 2010
ALEX GUERRA FERREIRA
Ferreira AG, Leão RS, Carvalho-Assef APD, Folescu TW, Barth AL, Marques EA. Influence of biofilm formation in the susceptibility of Pseudomonas aeruginosa from Brazilian patients with cystic fibrosis. APMIS 2010; 118: 606,12. Biofilms play a key role in the occurrence of lung infections by Pseudomonas aeruginosa in patients with cystic fibrosis (CF). In this study, we examined 40 isolates of P. aeruginosa from CF patients according to their capacity to form biofilm. We also compared their in vitro response to antimicrobials according to different modes of growth (planktonic vs biofilm) and performed molecular typing. All isolates proved capable of forming biofilm. However, there was no difference in biofilm development according to the mucoid and nonmucoid phenotypes and among isolates obtained at different periods of the chronic infection. All isolates tested for antimicrobial susceptibility in the biofilm state (BIC) were consistently more resistant to antibiotics than the same isolate tested in the planktonic state. The molecular typing indicates a considerable clonal diversity among isolates. We identified five patients harboring the same strain over different periods. These strains, however, displayed different levels of biofilm formation and BIC values for antibiotics tested. The results of the present study demonstrate that there is a marked difference in the susceptibility profile according to the mode of growth of CF P. aeruginosa, as cells tested in the biofilm state proved consistently more resistant to antibiotics. [source]

Crystallization and preliminary X-ray crystallographic characterization of a public CMV-specific TCR in complex with its cognate antigen

ACTA CRYSTALLOGRAPHICA SECTION F (ELECTRONIC), Issue 11 2009
Jean-Baptiste Reiser
The T-cell response to human cytomegalovirus is characterized by a dramatic reduction of clonal diversity in patients undergoing chronic inflammation or immunodepression. In order to check whether all the selected high-avidity T-cell clones recognize the immunodominant pp65 peptide antigen pp65495,503 (NLVPMVATV) presented by the major histocompatibility complex (MHC) molecule HLA-A2 in a similar manner, several public high-affinity T-cell receptors (TCRs) specific for the pp65495,503,HLA-A2 complex have been investigated. Expression, purification and crystallization were performed and preliminary crystallographic data were collected to 4.7,Å resolution for the RA15 TCR in complex with the pp65495,503,HLA-A2 complex. Comparison of the RA15,pp65495,503,HLA-A2 complex molecular-replacement solution with the structure of another high-affinity pp65495,503,HLA-A2-specific TCR, RA14, shows a shared docking mode, indicating that the clonal focusing could be accompanied by the selection of a most favoured peptide-readout mode. However, the position of the RA15 V, domain is significantly shifted, suggesting a different interatomic interaction network. [source]

Reproductive strategies in some arctic Saxifraga (Saxifragaceae), with emphasis on the narrow endemic S. svalbardensis and its parental species

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 1 2001
CHRISTIAN BROCHMANN
Arctic saxifrages show conspicuous reproductive and chromosomal variation. We examined sexual and asexual traits in 43 phytotron-cultivated Svalbard populations of nine species, including the endemic, supposedly entirely asexual and aneupolyploid S. svalbardensis and its parental species, S. cernua and S. rivularis. All species were self-compatible hermaphrodites with low pollen/ovule ratios, including the strongly protandrous S. cernua, which previously has been reported as self-incompatible with an androdioecious mating system. Spontaneous selfing resulted in considerable seed set in several species and a few seeds in S. svalbardensis and S. cernua; hand-selfing and cross-pollination often increased seed set in the two latter species. Self-fertilized seeds of S. svalbardensis and S. cernua were viable and developed into normal, vigorous plants. Saxifraga rivularis and its close relative S. hyperborea were strongly autogamous. The bulbil-reproducing S. svalbardensis and S. cernua showed extreme variation in fertility, probably because of frequent aneuploidy. Many plants of S. cernua were fully fertile, suggesting that although natural seed set rarely has been observed, sexual reproduction is frequent enough to maintain its previously reported high levels of clonal diversity. Some plants of S. svalbardensis were also fairly fertile. This species may have considerable evolutionary potential; sexual events can lead to increasingly fertile genets with euploid chromosome numbers. [source]

Application of RAPDs to the critical taxonomy of the English endemic elm Ulmus plotii Dace

BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, Issue 3 2000
MAX COLEMAN
The taxonomy of the British elms is notoriously complicated and a satisfactory consensus classification remains elusive. This taxonomic complexity appears to be attributable to the reproductive biology of the species. Ulmus glabra Huds. reproduces sexually and its taxonomic status is widely (albeit not universally) accepted. In contrast, the suckering elms of the U. minor complex (U. minor Mill. emend. Richens sensu latissimo) rarely reproduce by seed in Britain. Instead they perpetuate predominantly by vegetative reproduction; arguments regarding their taxonomy are legion. We have used molecular markers (RAPDs) to investigate the amounts and partitioning of clonal diversity and taxon inter-relationships in the British elms, focusing on a particularly enigmatic suckering elm, U. plotii Druce. Our molecular data suggest that all samples of U. plotii that precisely match the type description are ramets of a single genet, the distribution of which is attributable to human planting. Morphologically similar samples, which have many but not all of the U. plotii diagnostic characters, do not cluster with U. plotii when the RAPD data are analysed using principal coordinates analysis (PCO). Instead, they are scattered on the PCO plots throughout the broader range of variability of the U. minor complex. The implications of these results for the taxonomy of the British elms are discussed, and the need to combine knowledge of population structure with taxonomic pragmatism is emphasized. [source]