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CID Spectra (cid + spectrum)
Selected AbstractsFragmentation of Alkoxo(catecholato)vanadium(V) Complexes[(C6H4O2)V(OR1)(OR2)]+ in the Gas PhaseEUROPEAN JOURNAL OF INORGANIC CHEMISTRY, Issue 14 2005Malgorzata Kaczorowska Abstract Electrospray ionization (ESI) mass spectrometry is used to investigate the gas-phase dissociation behavior of vanadium(V) complexes [(C6H4O2)V(OR1)(OR2)]+ containing two identical or different alkoxy groups (R1, R2 = CH3, C2H5, n -C3H7, i -C3H7 and t -C4H9) and a catecholato ligand (C6H4O2). The fragmentation reactions of the complexes are studied by collision-induced dissociation (CID) and labeling experiments. For [(C6H4O2)V(OR1)(OR2)]+ cations with alkoxo groups larger than methyl, a trend for preferential evaporation of hydrocarbon fragments is observed, followed by expulsion of neutral alcohols. Further, the CID spectra of all complexes show a signal which can be assigned to the complex [(C6H4O2)VO]+. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2005) [source] Evaluation of glycosylation and malonylation patterns in flavonoid glycosides during LC/MS/MS metabolite profilingJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 5 2008P. Kachlicki Abstract Flavonoid conjugates constitute several classes of plant phenolic secondary metabolites including many isomeric compounds differing in the hydroxylation pattern and substitution of their rings with different groups such as alkyls, acyls or sugars. These compounds occur in plant tissues mainly as glycosides and in many cases it is necessary to have reliable and detailed information concerning the structure of these natural products. Our results were obtained using leaf extracts of Arabidopsis thaliana and Lupinus angustifolius in which different glycosides of flavones, flavonols and isoflavones are present. Analysis of collision-induced dissociation (CID)/MS/MS spectra of protonated [M + H]+, sodiated [M + Na]+ or deprotonated [M , H], molecules recorded during HPLC runs may bring needed information in this respect. However, registration of mass spectra of [M + Na]+ ions with a good efficiency is possible only after post-column addition of a sodium acetate solution to the LC column eluate. The retention of sodium cation on the saccharidic parts of the molecule is observed after the CID fragmentation. In many cases, the location of this cation on the glycan attached to C-3 hydroxyl group of flavonol led to assignment of its structure. Additionally, the determination of the structure of the aglycone and of the sequence of the glycan part was made possible through the CID data obtained from the [M + H]+ and [M , H], ions. CID spectra show a different order of sugar elimination from hydroxyl groups at C-3 and C-7 in flavonol glycosides isolated from A. thaliana leaves and give sufficient information to discriminate flavonoid O-diglycosides from flavonoid di-O-glycosides. Copyright © 2007 John Wiley & Sons, Ltd. [source] Internal energy distribution of peptides in electrospray ionization : ESI and collision-induced dissociation spectra calculationJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 4 2008Alireza Pak Abstract The internal energy of ions and the timescale play fundamental roles in mass spectrometry. The main objective of this study is to estimate and compare the internal energy distributions of different ions (different nature, degree of freedom ,DOF' and fragmentations) produced in an electrospray source (ESI) of a triple-quadrupole instrument (Quattro I Micromass). These measurements were performed using both the Survival Yield method (as proposed by De Pauw) and the MassKinetics software (kinetic model introduced by Vékey). The internal energy calibration is the preliminary step for ESI and collision-induced dissociation (CID) spectra calculation. meta -Methyl-benzylpyridinium ion and four protonated peptides (YGGFL, LDIFSDF, LDIFSDFR and RLDIFSDF) were produced using an electrospray source. These ions were used as thermometer probe compounds. Cone voltages (Vc) were linearly correlated with the mean internal energy values ( Rapid screening and characterization of drug metabolites using a new quadrupole,linear ion trap mass spectrometerJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 2 2003Gérard Hopfgartner Abstract The application of a new hybrid RF/DC quadrupole,linear ion trap mass spectrometer to support drug metabolism and pharmacokinetic studies is described. The instrument is based on a quadrupole ion path and is capable of conventional tandem mass spectrometry (MS/MS) as well as several high-sensitivity ion trap MS scans using the final quadrupole as a linear ion trap. Several pharmaceutical compounds, including trocade, remikiren and tolcapone, were used to evaluate the capabilities of the system with positive and negative turbo ionspray, using either information-dependent data acquisition (IDA) or targeted analysis for the screening, identification and quantification of metabolites. Owing to the MS/MS in-space configuration, quadrupole-like CID spectra with ion trap sensitivity can be obtained without the classical low mass cutoff of 3D ion traps. The system also has MS3 capability which allows fragmentation cascades to be followed. The combination of constant neutral loss or precursor ion scan with the enhanced product ion scan was found to be very selective for identifying metabolites at the picogram level in very complex matrices. Owing to the very high cycle time and, depending on the mass range, up to eight different MS experiments could be performed simultaneously without compromising chromatographic performance. Targeted product ion analysis was found to be complementary to IDA, in particular for very low concentrations. Comparable sensitivity was found in enhanced product ion scan and selected reaction monitoring modes. The instrument is particularly suitable for both qualitative and quantitative analysis. Copyright © 2003 John Wiley & Sons, Ltd. [source] Discrimination between pentose oligosaccharides containing D -xylopyranose or L -arabinofuranose as non-reducing terminal residue using fast atom bombardment mass spectrometry,JOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 4 2001Vladimír Ková Abstract Collisional-induced dissociation (CID) mass spectra of the [M + H]+ and [M , H], ions obtained under fast atom bombardment conditions of a number of methyl glycoside di-, tri- and tetrasaccharides, containing D -xylopyranosyl and/or L -arabinofuranosyl residues at the non-reducing terminus, do not provide information about their ring size. This information could only be obtained from a careful comparison of the intensity ratio of the [M + Na , 90]+ and [M + Na , 104]+ ions (0,2Xt/1,5Xt) in the high-energy CID spectra of the sodium-cationized di-, tri- and probably also tetrasaccharide compounds. Copyright © 2001 John Wiley & Sons, Ltd. [source] De novo sequencing of peptides by MS/MSPROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 4 2010Joerg Seidler Abstract The current status of de novo sequencing of peptides by MS/MS is reviewed with focus on collision cell MS/MS spectra. The relation between peptide structure and observed fragment ion series is discussed and the exhaustive extraction of sequence information from CID spectra of protonated peptide ions is described. The partial redundancy of the extracted sequence information and a high mass accuracy are recognized as key parameters for dependable de novo sequencing by MS. In addition, the benefits of special techniques enhancing the generation of long uninterrupted fragment ion series for de novo peptide sequencing are highlighted. Among these are terminal 18O labeling, MSn of sodiated peptide ions, N-terminal derivatization, the use of special proteases, and time-delayed fragmentation. The emerging electron transfer dissociation technique and the recent progress of MALDI techniques for intact protein sequencing are covered. Finally, the integration of bioinformatic tools into peptide de novo sequencing is demonstrated. [source] Characterization of a peptide family from the skin secretion of the Middle East Tree Frog Hyla savignyi by composition-based de novo sequencingRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 19 2010Markus Langsdorf A new tryptophyllin-like peptide family was found in the skin secretion of the tree frog Hyla savignyi. Peptides were characterized by database-independent sequencing strategies and specific ion fragmentation features were investigated. Skin secretions from specimens of Hyla savignyi were collected by mild electrical stimulation. Peptides were separated by reversed-phase nano-high-performance liquid chromatography (nanoHPLC) and mass spectra were acquired online by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS). Peptides were characterized by manual de novo sequencing and by composition-based sequencing (CBS), appearing mostly as C-terminal free acids and as their acid amide analogs. Amide peptides yielded lower intensities of y-type ions after collision-induced dissociation (CID) than their acid analogs. A mechanism of internal b-ion formation (positive ion mode) and of CO2 elimination (negative ion mode) is proposed. We also exemplified phenomena such as the proline effect and formation of non-direct sequence ions after sequence rearrangements. The occurrence of rearrangement products, of internal ions and of the proline effect made the CID spectra highly complex. CBS analysis nevertheless resulted in successful and highly reliable sequence analysis. Copyright © 2010 John Wiley & Sons, Ltd. [source] Formation of molecular radical cations of aliphatic tripeptides from their complexes with CuII(12-crown-4)RAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 16 2004Ivan K. Chu Molecular radical cations have proven to be difficult to generate from aliphatic peptides under electrospray ionization mass spectrometry (ESI-MS) conditions. For a family of small aliphatic peptides GGX, where XG, A, P, I, L and V, these cations have been generated by electrospraying a mixture of Cu.2+, 12-crown-4 and GGX in methanol/water. GGX.+ is readily formed from the collision-induced dissociation (CID) of [CuII(12-crown-4)(GGX)].2+. The formation of these aliphatic peptide radical ions from these complexes, in cases where it is not possible from the corresponding complexes involving a series of amine ligands instead of 12-crown-4, is likely due to the second ionization energy of the [CuI(12-crown-4)(GGX)]+ complex being higher than that of the corresponding [CuI(amine)(GGX)]+ complex. Using these 12-crown-4 complexes, GGI can be differentiated from the isomeric GGL by comparing the CID spectra of their [a3+H].+ ions. Copyright © 2004 John Wiley & Sons, Ltd. [source] Cluster ions of diquat and paraquat in electrospray ionization mass spectra and their collision-induced dissociation spectraRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 12 2003Boris L. Milman Cluster ions such as [Cat+X+nM]+ (n,=,0,4); [Cat-H+nM]+ (n,=,1,3); and [2(Cat-H)+X+nM]+ (n,=,0,2), where Cat, X, and M are the dication, anion, and neutral salt (CatX2), respectively, are observed in electrospray ionization (ESI) mass spectrometry of relatively concentrated solutions of diquat and paraquat. Collision-induced dissociation (CID) reactions of the clusters were observed by tandem mass spectrometry (MS/MS), including deprotonation to form [Cat-H]+, one-electron reduction of the dication to form Cat+., demethylation of the paraquat cation to form [Cat-CH3]+, and loss of neutral salt to produce smaller clusters. The difference in acidity and reduction power between diquat and paraquat, evaluated by thermodynamical estimates, can rationalize the different fractional yields of even-electron ([Cat-H]+ and its clusters) and odd-electron (mostly Cat+.) ions in ESI mass spectra of these pesticides. The [Cat+n,·,Solv]2+ doubly charged cluster ions, where n,,,2 and Solv is the solvent molecule (methanol and/or water), are only observed as very weak peaks in precursor ion CID spectra of the Cat2+ salt cation at low collision energy. The presence of an anion and a solvent molecule in a cluster is assumed to be related to existence of tight and loose ion pairs, respectively, in multiply charged droplets/ions formed by ESI. The results emphasize again the role of solution chemistry concepts such as acidity/basicity, redox power, and ion-pair formation, for ESI. Copyright © 2003 John Wiley & Sons, Ltd. [source] Studies on azaspiracid biotoxins.RAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 24 2002In this report, the mass spectral analysis of azaspiracid biotoxins is described. Specifically, the collision-induced dissociation (CID) behavior and differences between CID spectra obtained on a triple-quadrupole, a quadrupole time-of-flight, and an ion-trap mass spectrometer are addressed here. The CID spectra obtained on the triple-quadrupole mass spectrometer allowed the classification of the major product ions of the five investigated compounds (AZA 1,5) into five distinct fragment ion groups, according to the backbone cleavage positions. Although the identification of unknown azaspiracids was difficult based on CID alone, the spectra provided sufficient structural information to allow confirmation of known azaspiracids in marine samples. Furthermore, we were able to detect two new azaspiracid analogs (AZA 1b and 6) in our samples and provide a preliminary structural analysis. The proposed dissociation pathways under tandem mass spectrometry (MS/MS) conditions were confirmed by a comparison with accurate mass data from electrospray quadrupole time-of-flight MS/MS experiments. Regular sequential MSn analysis on an ion-trap mass spectrometer was more restricted in comparison to the triple-quadrupole mass spectrometer, because the azaspiracids underwent multiple [M,+,H,,,nH2O]+ (n,=,1,6) losses from the precursor ion under CID. Thus, the structural information obtained from MSn experiments was somewhat limited. To overcome this limitation, we developed a wide-range excitation technique using a 180-u window that provided results comparable to the triple-quadrupole instrument. To demonstrate the potential of the method, we applied it to the analysis of degraded azaspiracids from mussel tissue extracts. Copyright © 2002 John Wiley & Sons, Ltd. [source] Structural determination of hexadecanoic lysophosphatidylcholine regioisomers by fast atom bombardment tandem mass spectrometryRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 22 2002Jongki Hong The structural determination of sn -1 and sn -2 hexadecanoic lysophosphatidylcholine (LPC) regioisomers was carried out using fast atom bombardment tandem mass spectrometry (FAB-MS/MS). The collision-induced dissociation (CID) of protonated and sodiated molecules produced diverse product ions due mainly to charge remote fragmentations. Based on the information obtained from the CID spectra of protonated and sodiated molecules, sn-1 and sn-2 hexadecanoic LPC isomers could be discriminated. Especially, the abundance ratio of the diagnostic ion pair [m/z 224/226] in the CID spectra of [M,+,H]+ ions was shown to be greatly different. Moreover, the CID-MS/MS spectra of sodium-adducted molecules for hexadecanoic LPC isomers showed characteristic product ions such as [M,+,Na,,,103]+, [M,+,Na,,,85]+, and [M,+,Na,,,59]+, by which their regio-specificity can be differentiated. Copyright © 2002 John Wiley & Sons, Ltd. [source]
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