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Channel Formation (channel + formation)
Selected AbstractsMonitoring the Channel Formation in Organic Field-Effect Transistors via Photoinduced Charge TransferADVANCED FUNCTIONAL MATERIALS, Issue 5 2009Thokchom Birendra Singh Abstract Conducting channel formation in organic field-effect transistors (OFETs) is considered to happen in the organic semiconductor layer very close to the interface with the gate dielectric. In the gradual channel approximation, the local density of accumulated charge carriers varies as a result of applied gate bias, with the majority of the charge carriers being localized in the first few semiconductor monolayers close to the dielectric interface. In this report, a new concept is employed which enables the accumulation of charge carriers in the channel by photoinduced charge transfer. An OFET employing C60 as a semiconductor and divinyltetramethyldisiloxane-bis(benzocyclobutene) as the gate dielectric is modified by a very thin noncontinuous layer of zinc-phthalocyanine (ZnPc) at the semiconductor/dielectric interface. With this device geometry, it is possible to excite the phthalocyanine selectively and photogenerate charges directly at the semiconductor/dielectric interface via photoinduced electron transfer from ZnPc onto C60. Thus the formation of a gate induced and a photoinduced channel in the same device can be correlated. [source] Understanding the temporal dynamics of the wandering Renous River, New Brunswick, CanadaEARTH SURFACE PROCESSES AND LANDFORMS, Issue 10 2005Leif M. Burge Abstract Wandering rivers are composed of individual anabranches surrounding semi-permanent islands, linked by single channel reaches. Wandering rivers are important because they provide habitat complexity for aquatic organisms, including salmonids. An anabranch cycle model was developed from previous literature and field observations to illustrate how anabranches within the wandering pattern change from single to multiple channels and vice versa over a number of decades. The model was used to investigate the temporal dynamics of a wandering river through historical case studies and channel characteristics from field data. The wandering Renous River, New Brunswick, was mapped from aerial photographs (1945, 1965, 1983 and 1999) to determine river pattern statistics and for historical analysis of case studies. Five case studies consisting of a stable single channel, newly formed anabranches, anabranches gaining stability following creation, stable anabranches, and an abandoning anabranch were investigated in detail. Long profiles, hydraulic geometry, channel energy, grain size and sediment mobility variables were calculated for each channel. Within the Renous study area, the frequency of channel formation and abandonment were similar over the 54 years of analysis, indicating that the wandering pattern is being maintained. Eight anabranches were formed through avulsions, five were formed through the emergence of islands from channel bars and 11 anabranches were abandoned. The stable anabranch pair displayed similar hydraulic geometry and channel energy characteristics, while unstable anabranch pairs did not. The anabranch pair that gained stability displayed more similar channel energy characteristics than the anabranch pair that was losing stability (abandoning). It appears that anabranch pairs with similar energy characteristics are more stable than anabranches where these characteristics are out of balance. This is consistent with the hypothesis that anabranch pairs of similar length will be more stable than those with dissimilar lengths. Copyright © 2005 John Wiley & Sons, Ltd. [source] The sociobiology of biofilmsFEMS MICROBIOLOGY REVIEWS, Issue 1 2009Carey D. Nadell Abstract Biofilms are densely packed communities of microbial cells that grow on surfaces and surround themselves with secreted polymers. Many bacterial species form biofilms, and their study has revealed them to be complex and diverse. The structural and physiological complexity of biofilms has led to the idea that they are coordinated and cooperative groups, analogous to multicellular organisms. We evaluate this idea by addressing the findings of microbiologists from the perspective of sociobiology, including theories of collective behavior (self-organization) and social evolution. This yields two main conclusions. First, the appearance of organization in biofilms can emerge without active coordination. That is, biofilm properties such as phenotypic differentiation, species stratification and channel formation do not necessarily require that cells communicate with one another using specialized signaling molecules. Second, while local cooperation among bacteria may often occur, the evolution of cooperation among all cells is unlikely for most biofilms. Strong conflict can arise among multiple species and strains in a biofilm, and spontaneous mutation can generate conflict even within biofilms initiated by genetically identical cells. Biofilms will typically result from a balance between competition and cooperation, and we argue that understanding this balance is central to building a complete and predictive model of biofilm formation. [source] Monitoring the Channel Formation in Organic Field-Effect Transistors via Photoinduced Charge TransferADVANCED FUNCTIONAL MATERIALS, Issue 5 2009Thokchom Birendra Singh Abstract Conducting channel formation in organic field-effect transistors (OFETs) is considered to happen in the organic semiconductor layer very close to the interface with the gate dielectric. In the gradual channel approximation, the local density of accumulated charge carriers varies as a result of applied gate bias, with the majority of the charge carriers being localized in the first few semiconductor monolayers close to the dielectric interface. In this report, a new concept is employed which enables the accumulation of charge carriers in the channel by photoinduced charge transfer. An OFET employing C60 as a semiconductor and divinyltetramethyldisiloxane-bis(benzocyclobutene) as the gate dielectric is modified by a very thin noncontinuous layer of zinc-phthalocyanine (ZnPc) at the semiconductor/dielectric interface. With this device geometry, it is possible to excite the phthalocyanine selectively and photogenerate charges directly at the semiconductor/dielectric interface via photoinduced electron transfer from ZnPc onto C60. Thus the formation of a gate induced and a photoinduced channel in the same device can be correlated. [source] The C-terminal C1 cassette of the N -methyl- d -aspartate receptor 1 subunit contains a bi-partite nuclear localization sequenceJOURNAL OF NEUROCHEMISTRY, Issue 6 2002K. D. Holmes Abstract The N -methyl- d -aspartate receptor (NMDAR) is a multimeric transmembrane protein composed of at least two subunits. One subunit, NR1, is derived from a single gene and can be subdivided into three regions: the N-terminal extracellular domain, the transmembrane regions, and the C-terminal intracellular domain. The N-terminal domain is responsible for Mg2+ metal ion binding and channel activity, while the transmembrane domains are important for ion channel formation. The intracellular C-terminal domain is involved in regulating receptor activity and subcellular localization. Our recent experiments indicated that the intracellular C-terminal domain, when expressed independently, localizes almost exclusively in the nucleus. An examination of the amino acid sequence reveals the presence of a putative nuclear localization sequence (NLS) in the C1 cassette of the NR1 intracellular C-terminus. Using an expression vector designed to test whether a putative NLS sequence is a valid, functional NLS, we have demonstrated that a bi-partite NLS does in fact exist within the NR1-1 C-terminus. Computer algorithms identified a putative helix,loop,helix motif that spanned the C0C1 cassettes of the C-terminus. These data suggest that the NR1 subunit may represent another member of a family of transmembrane proteins that undergo intramembrane proteolysis, releasing a cytosolic peptide that is actively translocated to the nucleus leading to alterations in gene regulation. [source] Membrane Permeabilization of a Mammalian Neuroendocrine Cell Type (PC12) by the Channel-Forming Peptides Zervamicin, Alamethicin, and GramicidinCHEMISTRY & BIODIVERSITY, Issue 6 2007Abstract Zervamicin IIB (ZER) is a 16-mer peptaibol that produces voltage-dependent conductances in artificial membranes, a property considered responsible for its antimicrobial activity to mainly Gram -positive microorganisms. In addition, ZER appears to inhibit the locomotor activity of the mouse (see elsewhere in this Issue), probably by affecting the brain. To examine whether the electrophysiological properties of the neuronal cells of the central neural system might be possibly influenced by the pore forming ZER, the present study was undertaken as a first attempt to unravel the molecular mechanism of this biological activity. To this end, membrane permeabilization of the neuron-like rat pheochromocytoma cell (PC12) by the channel-forming ZER was studied with the whole-cell patch-clamp technique, and compared with the permeabilizations of the well-known voltage-gated peptaibol alamethicin F50/5 (ALA) and the cation channel-forming peptide-antibiotic gramicidin D (GRAM). While 1,,M GRAM addition to PC12 cells kept at a membrane potential Vm=0,mV causes an undelayed gradual increase of a leak conductance with a negative reversal potential of ca. ,24,mV, ZER and ALA are ineffective at that concentration and potential. However, if ZER and ALA are added in 5,10,,M concentrations while Vm is kept at ,60,mV, they cause a sudden and strong permeabilization of the PC12 cell membrane after a delay of 1,2,min, usually leading to disintegrating morphology changes of the patched cell but not of the surrounding cells of the culture at that time scale. The zero reversal potential of the established conductance is consistent with the known aselectivity of the channels formed. This sudden permeabilization does not occur within 10,20,min at Vm=0,mV, in accordance with the known voltage dependency of ZER and ALA channel formation in artificial lipid membranes. The permeabilizing action of these peptaibols on the culture as a whole is further supported by K+ -release measurements from a PC12 suspension with a K+ -selective electrode. Further analysis suggested that the permeabilizing action is associated with extra- or intracellular calcium effects, because barium inhibited the permeabilizing effects of ZER and ALA. We conclude, for the membrane of the mammalian neuron-like PC12 cell, that the permeabilizing effects of the peptides ZER and ALA are different from those of GRAM, consistent with earlier studies of these peptides in other (artificial) membrane systems. They are increased by cis -positive membrane potentials in the physiological range and may include calcium entry into the PC12 cell. [source] Ion channel formation and membrane-linked pathologies of misfolded hydrophobic proteins: The role of dangerous unchaperoned moleculesCLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY, Issue 9 2002Joseph I Kourie Summary 1.,Protein,membrane interaction includes the interaction of proteins with intrinsic receptors and ion transport pathways and with membrane lipids. Several hypothetical interaction models have been reported for peptide-induced membrane destabilization, including hydrophobic clustering, electrostatic interaction, electrostatic followed by hydrophobic interaction, wedge × type incorporation and hydrophobic mismatch. 2.,The present review focuses on the hypothesis of protein interaction with lipid membranes of those unchaperoned positively charged and misfolded proteins that have hydrophobic regions. We advance the hypothesis that protein misfolding that leads to the exposure of hydrophobic regions of proteins renders them potentially cytotoxic. Such proteins include prion, amyloid , protein (A,P), amylin, calcitonin, serum amyloid and C-type natriuretic peptides. These proteins have the ability to interact with lipid membranes, thereby inducing membrane damage and cell malfunction. 3.,We propose that the most significant mechanism of membrane damage induced by hydrophobic misfolded proteins is mediated via the formation of ion channels. The hydrophobicity based toxicity of several proteins linked to neurodegenerative pathologies is similar to those observed for antibacterial toxins and viral proteins. 4.,It is hypothesized that the membrane damage induced by amyloids, antibacterial toxins and viral proteins represents a common mechanism for cell malfunction, which underlies the associated pathologies and cytotoxicity of such proteins. [source] | ||||||||||