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Selected AbstractsSynthesis of Benz[e]indolium Heptamethine Cyanines Containing C-Substituents at the Central Portion of the Heptamethine Moiety.CHEMINFORM, Issue 47 2005Jozef Salon Abstract For Abstract see ChemInform Abstract in Full Text. [source] Managing precipitation use in sustainable dryland agroecosystemsANNALS OF APPLIED BIOLOGY, Issue 2 2004GARY A PETERSON Summary In the Great Plains of North America potential evaporation exceeds precipitation during most months of the year. About 75% of the annual precipitation is received from April through September, and is accompanied by high temperatures and low relative humidity. Dryland agriculture in the Great Plains has depended on wheat production in a wheat-fallow agroecosystem (one crop year followed by a fallow year). Historically this system has used mechanical weed control practices during the fallow period, which leaves essentially no crop residue cover for protection against soil erosion and greatly accelerates soil organic carbon oxidation. This paper reviews the progress made in precipitation management in the North American Great Plains and synthesises data from an existing long-term experiment to demonstrate the management principles involved. The long-term experiment was established in 1985 to identify dryland crop and soil management systems that would maximize precipitation use efficiency (maximization of biomass production per unit of precipitation received), improve soil productivity, and increase economic return to the farmers in the West Central portion of the Great Plains. Embedded within the primary objective are sub-objectives that focus on reducing the amount of summer fallow time and reversing the soil degradation that has occurred in the wheat-fallow cropping system. The experiment consists of four variables: 1) Climate regime; 2) Soils; 3) Management systems; and 4) Time. The climate variable is based on three levels of potential evapotranspiration (ET), which are represented by three sites in eastern Colorado. All sites have annual long-term precipitation averages of approximately 400,450 mm, but vary in growing season open pan evaporation from 1600 mm in the north to 1975 mm in the south. The soil variable is represented by a catenary sequence of soils at each site. Management systems, the third variable, differ in the amount of summer fallow time and emphasize increased crop diversity. All systems are managed with no-till techniques. The fourth variable is time, and the results presented in this paper are for the first 12 yr (3 cycles of the 4-yr system). Comparing yields of cropping systems that differ in cycle length and systems that contain fallow periods, when no crop is produced, is done with a technique called "annualisation". Yields are "annualised" by summing yields for all crops in the system and dividing by the total number of years in the system cycle. For example in a wheat-fallow system the wheat yield is divided by two because it takes 2 yr to produce one crop. Cropping system intensification increased annualised grain and crop residue yields by 75 to 100% compared to wheat-fallow. Net return to farmers increased by 25% to 45% compared to wheat-fallow. Intensified cropping systems increased soil organic C content by 875 and 1400 kg ha,1, respectively, after 12 yr compared to the wheat-fallow system. All cropping system effects were independent of climate and soil gradients, meaning that the potential for C sequestration exists in all combinations of climates and soils. Soil C gains were directly correlated to the amount of crop residue C returned to the soil. Improved macroaggregation was also associated with increases in the C content of the aggregates. Soil bulk density was reduced by 0.01g cm,3 for each 1000 kg ha,1 of residue addition over the 12-yr period, and each 1000 kg ha,1 of residue addition increased effective porosity by 0.3%. No-till practices have made it possible to increase cropping intensification beyond the traditional wheat-fallow system and in turn water-use efficiency has increased by 30% in West Central Great Plains agroecosystems. Cropping intensification has also provided positive feedbacks to soil productivity via the increased amounts of crop residue being returned to the soil. [source] Treatment of Lentigo Maligna with Imiquimod before Staged ExcisionDERMATOLOGIC SURGERY, Issue 2 2008MURRAY A. COTTER MD BACKGROUND Imiquimod 5% cream has demonstrated effectiveness in the treatment of lentigo maligna (LM) in several small studies. None of the studies to date have included posttreatment surgical removal to confirm negative histologic margins. OBJECTIVE The aim of this retrospective analysis was to assess the efficacy of topical imiquimod in LM by circumferentially examining vertically oriented sections from a geometrically designed "picture frame" margin as well as bread-loafed sections of the central portion after staged excisions of imiquimod-treated lesions of LM. METHODS Forty patients with biopsy-confirmed LM were treated five times a week for 3 months with 5% imiquimod cream before staged excision. Tazarotene 0.1% gel was added when no clinical signs of erythema developed with imiquimod alone after 1 month (10 patients). After the course of topical therapy, patients were assessed for clinical and complete histologic clearance after staged excision. RESULTS A total of 33 of 40 patients had a complete clinical response as determined by the absence of remaining clinical lesion on physical examination. Upon histologic review, 30 of 40 patients had no evidence of LM whereas 10 of 40 harbored residual disease. One patient was found to have histologic evidence of invasion after completing the topical protocol. After a mean follow-up of 18 months (range, 12,34 months) and after complete surgical excision of the treatment site, none of the imiquimod-treated patients had evidence of recurrence. CONCLUSIONS Imiquimod appears to be an effective adjunctive treatment for LM but does not qualify as a replacement therapy for surgery. [source] Factors influencing the service-like thermomechanical fatigue test cycle endurance of 1% CrMoV rotor steelFATIGUE & FRACTURE OF ENGINEERING MATERIALS AND STRUCTURES, Issue 11 2003B. MASSEREY ABSTRACT Service-like thermomechanical fatigue tests have been performed in order to characterize the endurance of 1% CrMoV rotor steel under such transient thermal conditions. The key features of these tests are low strain rates (,10,5 s,1) and longer hold periods. In all testpieces, ratcheting with progressive section reduction is observed in the central portion of the gauge length accompanied by local amplification of the strain range. The finite-element-based analysis of this phenomenon allows the measured endurances to be rationalized with those determined from isothermal tests. Post-test inspection has revealed the development of two concurrent damaging mechanisms in the testpieces: (i) fatigue at the surface and (ii) creep in the interior. Different methods of damage calculation for creep,fatigue interaction are applied and compared in their predictive capabilities. [source] Streamer tomography velocity models for the Gulf of Corinth and Gulf of Itea, GreeceGEOPHYSICAL JOURNAL INTERNATIONAL, Issue 1 2004Barry C. Zelt SUMMARY The Gulf of Corinth (GOC), Greece is a rapidly extending, active continental rift with a record of large, damaging earthquakes. An extensive multichannel seismic (MCS) survey of the GOC conducted in 2001 provided, in addition to the processed MCS images, the opportunity to constrain velocity structure using refracted arrivals recorded along a 6-km-long streamer. We use first-arrival traveltimes to derive tomographic P -wave velocity models for several profiles collected in the central portion of the GOC. Eight of the profiles are closely spaced, north,south lines crossing the GOC and extending into the Gulf of Itea (GOI); a ninth profile is an east,west-oriented tie line. The N,S profiles image the relatively simple velocity structure of the deep Corinth rift basin and more complicated structure of the northern margin of the currently active rift. Integration of the velocity models with migrated MCS sections shows that south of the GOI the basement, which comprises Mesozoic nappes, occurs at a velocity of 4.5 km s,1 in the velocity models, although the actual velocity at, or just below, the top of basement is probably closer to 5,5.5 km s,1. The maximum sediment thickness in the Corinth basin is 2.2 km. The basement shallows to the north into a fault-bounded terrace in the central region between the two gulfs. Sediment cover in this central region decreases in thickness from west to east. Beneath the GOI, low average velocities beneath the rift-onset reflector indicate the presence of pre-rift sediments. The pre-rift velocity structure in the GOI is complex, with significant lateral variation from west to east. The E,W line shows that high-velocity basement is shallow (,1 km depth) and flat to the west of the GOI but dips ,20° east down to ,1.5 km beneath the pre-rift sediments of the GOI. [source] Classification of hydrological regimes of northern floodplain basins (Peace,Athabasca Delta, Canada) from analysis of stable isotopes (,18O, ,2H) and water chemistryHYDROLOGICAL PROCESSES, Issue 2 2007Brent B. Wolfe Abstract We used stable isotopes (,18O and ,2H) and water chemistry to characterize the water balance and hydrolimnological relationships of 57 shallow aquatic basins in the Peace-Athabasca Delta (PAD), northern Alberta, Canada, based on sampling at the end of the 2000 thaw season. Evaporation-to-inflow ratios (E/I) were estimated using an isotope mass-balance model tailored to accommodate basin-specific input water compositions, which provided an effective, first-order, quantitative framework for identifying water balances and associated limnological characteristics spanning three main, previously identified drainage types. Open-drainage basins (E/I < 0·4; n = 5), characterized by low alkalinity, low concentrations of nitrogen, dissolved organic carbon (DOC) and ions, and high minerogenic turbidity, include large, shallow basins that dominate the interior of the PAD and experience frequent or continuous river channel connection. Closed-drainage basins (E/I , 1·0; n = 16), in contrast, possess high alkalinity and high concentrations of nitrogen, DOC, and ions, and low minerogenic turbidity, and are located primarily in the relict and infrequently flooded landscape of the northern Peace sector of the delta. Several basins fall into the restricted-drainage category (0·4 # E/I < 1·0; n = 26) with intermediate water chemistries and are predominant in the southern Athabasca sector, which is subject to active fluviodeltaic processes, including intermittent flooding from riverbank overflow. Integration of isotopic and limnological data also revealed evidence for a new fourth drainage type, mainly located near the large open-drainage lakes that occupy the central portion of the delta but within the Athabasca sector (n = 10). These basins were very shallow (<50 cm deep) at the time of sampling and isotopically depleted, corresponding to E/I characteristic of restricted- and open-drainage conditions. However, they are limnologically similar to closed-drainage basins except for higher conductivity and higher concentrations of Ca2+ and Na+, and lower concentrations of SiO2 and chlorophyll c. These distinct features are due to the overriding influence of recent summer rainfall on the basin water balance and chemistry. The close relationships evident between water balances and limnological conditions suggest that past and future changes in hydrology are likely to be coupled with marked alterations in water chemistry and, hence, the ecology of aquatic environments in the PAD. Copyright © 2006 John Wiley & Sons, Ltd. [source] Real-time atomic force microscopy of root dentine during demineralization when subjected to chelating agentsINTERNATIONAL ENDODONTIC JOURNAL, Issue 9 2006G. De-Deus Abstract Aim, To explore the potential of atomic force microscopy (AFM) for the examination of changes to dentine surfaces during demineralization and evaluate qualitatively the effect of EDTA, EDTAC and citric acid. Methodology, Nine canine teeth were sectioned transversely at the cemento-enamel junction, and the crowns discarded. Subsequently, each root was embedded in an epoxy cylinder and discs approximately 5 mm thick were cut. A standard metallographic procedure was then used to prepare the surfaces for observation. From the central portion of these samples, two specimens were symmetrically prepared per tooth so that a total number of 18 samples was produced. To allow the use of a liquid cell during AFM, the samples were embedded in silicone rubber and were then randomly divided into three groups, as follows: group 1: 17% EDTA (pH 7.7), group 2: 17% EDTAC (pH 7.7) and group 3: 10% citric acid (pH 1.4). Topographical images were acquired during the demineralization process, allowing real-time observation of the dentine surface. Two operators assigned scores to the AFM images using a double-blind method. anova analysis with random effects (P < 0.05) was used to compare the results. Results, The average scores were 6.13 ± 0.35 for EDTAC, 7.36 ± 0.23 for EDTA and 14.55 ± 1.21 for citric acid. Citric acid was statistically different from EDTA and EDTAC while EDTA and EDTAC were not statistically different. Conclusions, The most effective demineralizing substance was citric acid. The methodology developed for real-time observation of dentine surfaces is a valuable method to evaluate demineralization. [source] Two Japanese cases of lichen planus pigmentosus-inversusINTERNATIONAL JOURNAL OF DERMATOLOGY, Issue 7 2007Aki Kashima MD Case 1 was a 51-year-old Japanese woman. She presented with an asymptomatic brown macule located on the right axilla of 2 months' duration. The smooth macule was 2 cm in diameter with a sharp demarcation (Fig. 1A). Figure 1. Photographs of skin lesions in two patients. (A) Case 1. Well-circumscribed brown macule without an active red border in the central portion of the right axilla. (B) Case 2. Symmetric distribution of brown macules without an active red border in the popliteal fossae Case 2 was a 62-year-old Japanese man. He presented with asymptomatic, symmetric, gray,brown macules located on the groin, axillae, and popliteal region of 6 months' duration. The smooth macules were several millimeters to centimeters in diameter and sharply demarcated (Fig. 1B). Oral or nail lesions, previous inflammatory processes in affected areas, and internal malignancies were absent. A causal relationship with drugs, recent sun exposure, or trauma could not be identified. Findings for work-up, including blood cell count, fasting blood sugar levels, liver function, serum electrolyte levels, serum electrophoresis, urinalysis, antinuclear antibodies, and serological examinations for human hepatitis viruses and syphilis, were within normal limits or negative. The lesions gradually disappeared without medication within 6 months. Biopsy specimens showed a lymphocytic infiltrate with basal vacuolar changes and prominent melanin incontinence in the upper dermis (Fig. 2A). The band-like lymphocytic infiltrate was moderate in Case 1 and mild in Case 2. Immunohistochemistry showed infiltrative CD8+ T lymphocytes with keratinocytic damage, indicating cytotoxic injury of the keratinocytes (Fig. 2B). Both the epidermis and the upper dermis contained CD1a+ cells (Fig. 2C). The keratinocytes focally and weakly expressed HLA-DR (Fig. 2D). These findings were identical in samples from both patients. Figure 2. Light and immunohistochemical microphotographs. (A) Mild, band-like, lymphocytic infiltrate with basal vacuolar change and prominent melanin incontinence in the upper dermis with apoptosis or necrosis of keratinocytes. (B) Epidermal infiltrate of CD8+ T lymphocytes with keratinocytic damage. (C) CD1a+ cells in the upper dermis. (D) Keratinocytes focally and weakly express HLA-DR (original magnifications: A, ×200; B,D, ×400) [source] Acute febrile neutrophilic dermatosis (Sweet's syndrome) with nodular episcleritis and polyneuropathyINTERNATIONAL JOURNAL OF DERMATOLOGY, Issue 2 2002Taizo Kato MD A 56-year-old Japanese housewife presented with multiple erythematous lesions in association with ocular hyperemia and pain in the right upper and lower extremities, including the hands and feet. These symptoms were preceded by a sore throat with persistent fever higher than 38.5 °C for about 1 week. Dermatologic examination showed tender, dull-red, erythematous lesions, measuring 1,2 cm in diameter, located predominantly on the forehead, cheeks, auricular region, neck, forearm, hands, and feet. A biopsy specimen obtained from an erythematous lesion on the right forearm revealed prominent edema in the papillary dermis and remarkable inflammatory cell infiltration throughout the entire dermis (Fig. 1). The infiltrate predominantly consisted of neutrophils and nuclear dust without signs of vasculitis. In routine examination, the leukocyte count was 15,000/mL (normal range, 4000,8000/mL) with severe neutrophilia (80%). The C-reactive protein (CRP) level was 17.65 mg/dL (normal range, < 0.5 mg/dL) and the anti-streptolysin (ASLO) level was 611 IU/mL (normal range, < 166 IU/mL). In human leukocyte antigen (HLA) testing, HLA-A2, -B39, -B35, -Cw2, and -Cw7 were positive, and HLA-B51, -B54, and -Cw1 were negative. Figure Figure 1 . Histologic picture showing a dermal infiltrate of neutrophils Ocular hyperemia was caused by episcleritis forming a nodule and surrounding congestion of the superficial episcleritic vessels at the central portion of the sclera (Fig. 2). The patient suffered from pain once an hour, continuing for about 3 min, at the lateral portion of the right upper and lower extremities, as well as the right small finger. Neurologic examination demonstrated moderate or slight muscle weakness in the extremities. Hand grasping powers were 9 and 7 kg on the right and left, respectively. The patient was right-handed. Dysesthesia and paresthesia were also observed on the hands and feet. The deep tendon reflexes were preserved, however, even in the distal portion of the upper and lower limbs. In addition, essential tremor localized to the neck was recognized. Magnetic resonance imaging did not show any episodes of transient abnormal signal intensity in the central nervous system. Figure 2. Nodular episcleritis (right eye). Telangiectasia of winding vessels with nodular elevation was observed at the upper portion of the sclera The patient was treated with prednisolone (initial dose of 30 mg/day) and intravenous injection of cefazolin sodium (2 g/day for 5 days). Almost complete regression of the ocular and neurologic manifestations, as well as the skin lesions, was achieved in 2 weeks. Prednisolone was reduced gradually and suspended after 4 weeks. Leukocyte and neutrophil counts, CRP, and ASO returned to normal on suspension of therapy. Slight paresthesia remained in the right small finger even after stopping steroid. There was no recurrence at follow-up 6 months later. [source] Schmorl's nodes: clinical significance and implications for the bioarchaeological recordINTERNATIONAL JOURNAL OF OSTEOARCHAEOLOGY, Issue 1 2008K. J. Faccia Abstract Back pain is one of the major contributors to disability and loss of productivity in modern populations. However, osteological correlates of back pain are often absent or, as yet, unidentified. As bioarchaeologists depend on osteological evidence to interpret quality of life in the past, back pain, with its profound effects on modern populations, is largely overlooked in archaeological samples. This study addresses this shortcoming in bioarchaeological analysis by exploring the relationship between a defined vertebral osteological lesion, the Schmorl's node, and its effect on quality of life in a clinical population. Using patient insight, healthcare practitioner diagnoses and MR imaging analyses, this study investigates: (1) Schmorl's nodes and sociodemographic factors; (2) the number, location and quantitative aspects (e.g. length, depth, area) of Schmorl's nodes, and how these influence the reporting of pain; (3) the dynamic effects of Schmorl's nodes, in combination with other variables, in the reporting of pain; and (4) the perception and impact of pain that patients attribute to Schmorl's nodes with regard to quality-of-life issues. The results of this study indicate that Schmorl's nodes located in the central portion of the vertebral body are significantly associated with patient reporting of pain, and that the presence of osteophytes, in the affected vertebral region, may increase the likelihood that an individual will report pain. This finding provides bioarchaeologists with an osteological correlate to begin interpreting the presence and impact of pain in archaeological populations, with implications for scoring Schmorl's nodes. Copyright © 2007 John Wiley & Sons, Ltd. [source] Spatial viability analysis of Amur tiger Panthera tigris altaica in the Russian Far East: the role of protected areas and landscape matrix in population persistenceJOURNAL OF APPLIED ECOLOGY, Issue 6 2006CARLOS CARROLL Summary 1The Amur or Siberian tiger Panthera tigris altaica forms a relatively small and disjunct population of less than 600 individuals in the Russian Far East. Because tigers in this region require large territories to acquire sufficient prey, current strictly protected areas, comprising 3·4% (10 300 km2) of the region, are unlikely to prevent extirpation of the subspecies in the face of expanding forestry and external demand for tiger parts. 2We used resource selection function models and spatially explicit population models to analyse the distribution and predict the demographic structure of the population to identify policy options that may enhance population viability. 3A resource selection function model developed from track distribution data predicted that tigers were most likely to occur in lower altitude valley bottoms with Korean pine forest and low human impacts. 4The results from the spatially explicit population model suggested that current tiger distribution is highly dependent on de facto refugia with low human impacts but without statutory protection, and that small increases in mortality in these areas will result in range fragmentation. Although an expanded reserve network only marginally increases tiger viability under current conditions, it dramatically enhances distribution under potential future scenarios, preventing regional extirpation despite a more hostile landscape matrix. 5The portion of tiger range most resistant to extirpation connects a large coastal reserve in the central portion of the region with largely unprotected watersheds to the north. A southern block of habitat is also important but more severely threatened with anthropogenic disturbances. The results suggest that preserving source habitat in these two zones and ensuring linkages are retained between blocks of habitat in the north and south will be critical to the survival of the tiger population. 6Synthesis and applications. Conservation priorities identified in this analysis differ from those suggested by a conservation paradigm focusing only on sustaining and connecting existing protected areas that has been applied to tiger conservation in more developed landscapes with higher prey densities. An alternative paradigm that assesses population viability in a whole-landscape context and develops priorities for both protected area expansion and increasing survival rates in the landscape matrix may be more appropriate in areas where tigers and other large carnivores coexist with low-density human populations. Although landscape connectivity merits increased emphasis in conservation planning, identification of landscape linkages should be tied to broad-scale recommendations resulting from spatial viability analyses in order to prevent misdirection of resources towards protecting corridors that add little to population persistence. [source] Protein expression pattern of P,glycoprotein along the gastrointestinal tract of the yucatan micropigJOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY, Issue 1 2004Huadong Tang Abstract The purpose of this study is to characterize the distribution pattern of P,gp protein levels along the entire GI tract in the Yucatan micropig, which is being developed as a model for human drug bioavailability. Small and large intestines were freshly obtained and divided into about 37 segments and 10 segments, respectively (ca., 1 foot/segment). Epithelial cells from the small intestine were obtained by an elution method; whereas, a scraping method was applied to the large intestine. Total cellular protein was isolated from the epithelial cells. Western blot analysis using P,gp antibody showed that the amount of P,gp protein increased distally from the duodenum to the ileum over approximately a 10,fold range. P,gp protein in the large intestine was present at a higher level in the central portion, but the absolute amount was much less than what was found in the small intestine. © 2004 Wiley Periodicals, Inc. J Biochem Mol Toxicol 18:18,22, 2004; Published online in Wiley InterScience (www.interscience.wiley.com). DOI 10.1002/jbt.20001 [source] Sonographic appearance of angiolymphoid hyperplasia with eosinophilia in the upper armJOURNAL OF CLINICAL ULTRASOUND, Issue 7 2008Chee-Wai Mak MD Abstract Angiolymphoid hyperplasia with eosinophilia is an uncommon benign condition characterized by cutaneous nodules involving primarily the head and neck regions of young adults. We report thecase of a 49-year-old woman with such a lesion in the arm. Sonographically, the lesion exhibited a hypoechoic rim and an echogenic central portion. On color Doppler imaging, the central portion was markedly vascular. © 2008 Wiley Periodicals, Inc. J Clin Ultrasound, 2008. [source] Minute amounts of intraarticular gas mimicking torn discoid lateral menisciJOURNAL OF MAGNETIC RESONANCE IMAGING, Issue 3 2010Martin I. Jordanov MD Abstract Presented are two cases of minute amounts of vacuum phenomena within the central portion of the lateral compartments of two knee joints, mimicking torn discoid lateral menisci. In each case, only the gradient echo images were able to correctly characterize the minute quantities of intraarticular gas by demonstrating "blooming" magnetic susceptibility artifact. The signal characteristics of the intraarticular gas were identical to those of fibrocartilage on all of the remaining routine, fast spin echo, "sports protocol" magnetic resonance imaging sequences. J. Magn. Reson. Imaging 2010;31:698,702. © 2010 Wiley-Liss, Inc. [source] MIDDLE MIOCENE DASHAVA FORMATION SANDSTONES, CARPATHIAN FOREDEEP, UKRAINEJOURNAL OF PETROLEUM GEOLOGY, Issue 4 2004I. Kurovets Middle Miocene (Sarmatian) sandstones in the Ukrainian Carpathian Foredeep are important exploration targets for natural gas. In this paper, we report on petrophysical studies on core samples of these sandstones with which we integrate wireline log data from 42 boreholes. Sarmation siltstones and sandstones in the study area are assigned to the lower part of the Dashava Formation. Seventeen units (LD 17 to LD 1:0.05 to 5m thick) are recognized in this formation on the basis of lithostratigraphy and log response. Sandstone content is highest within three lithostratigraphic complexes corresponding to units LD17-LD14, LD9-LD8 and LD5-LD3. During the Sarmatian, the Carpathian Foredeep was characterized by two depositional systems: a basinal turbidite system, and a second, more mixed system. Important controls on sedimentation included basin configuration and water depth, the occurrence of turbidity and other currents, and the location of provenance areas. Clastic material was delivered to the basin by rivers and ephemeral streams mostly from the Carpathian foldbelt. The content of sandy material within the Sarmatian succession increases from NW to SE, and from the central portion of the Krukenychy depression to the margins of the basin. [source] Association Between Alcoholism and ,-Amino Butyric Acid ,2 Receptor Subtype in a Russian PopulationALCOHOLISM, Issue 4 2005Jaakko Lappalainen Background: Two recent large genetic studies in the US population have reported association between genetic variation in ,-amino butyric acid ,2 receptor subtype (GABRA2) and risk for alcohol dependence. The goal of this study was to test whether GABRA2 is associated with alcohol dependence in a sample of Russian alcohol-dependent men. Methods: A total of 113 Russian alcohol-dependent men and 100 male population control subjects were recruited in St. Petersburg and genotyped for seven GABRA2 single-nucleotide polymorphisms (SNPs) using real-time PCR (TaqMan). Six SNPs were located in a GABRA2 haplotype block previously associated with alcohol dependence (AD) in the US population. SNPs and haplotypes were tested for an association to AD using ,2 analysis and a likelihood ratio-based statistic implemented in the software COCAPHASE. Results: Significant associations between two SNPs and AD were observed (p < 0.05). In addition, a trend-level association was observed between AD and three adjacent SNPs (p < 0.1). Associated alleles were carried in a haplotype that was present at frequencies of 0.37 and 0.48 in the control and alcohol-dependent populations, respectively (p < 0.06). Tight linkage disequilibrium spanning from the central portion of the gene to the 3, end was observed in this population. Comparison of the findings to the previously published studies in the US population revealed a highly similar linkage disequilibrium pattern in this population. Conclusions: These findings suggest that genetic variants of GABRA2 increase risk for AD in the Russian population and provide additional support to the hypothesis that polymorphic variation at the GABRA2 locus plays an important role in predisposing to AD at least in European-ancestry populations. [source] View ordering for magnetization prepared steady state free precession acquisition: Application in contrast-enhanced MR angiographyMAGNETIC RESONANCE IN MEDICINE, Issue 3 2004Pascal Spincemaille Abstract Magnetization prepared segmented acquisition requires a view order that maximizes signal contrast during the acquisition of the central portion of k -space. Steady state free precession (SSFP) acquisition further requires a view order that minimizes changes in phase-encoding gradients from one repetition to the next in order to minimize eddy current artifacts. In this article, optimal view ordering schemes satisfying these two requirements are formulated and applied to inversion prepared 3D SSFP contrast-enhanced MR angiography (MRA). Experiments on phantoms and pigs demonstrated improved background suppression and reduced image artifacts. Magn Reson Med 52:461,466, 2004. © 2004 Wiley-Liss, Inc. [source] Method for reduced SAR T1, -weighted MRIMAGNETIC RESONANCE IN MEDICINE, Issue 6 2004Andrew J. Wheaton Abstract A reduced specific absorption rate (SAR) version of the T1, -weighted MR pulse sequence was designed and implemented. The reduced SAR method employs a partial k -space acquisition approach in which a full power spin-lock pulse is applied to only the central phase-encode lines of k -space, while the remainder of k -space receives a low-power spin-lock pulse. Acquisition of high- and low-power phase-encode lines are interspersed chronologically to minimize average power deposition. In this way, the majority of signal energy in the central portion of k -space receives full T1, -weighting, while the average SAR of the overall acquisition can be reduced, thereby lowering the minimum safely allowable TR. The pulse sequence was used to create T1, maps of a phantom, an in vivo mouse brain, and the brain of a human volunteer. In the images of the human brain, SAR was reduced by 40% while the measurements of T1, differed by only 2%. The reduced SAR sequence enables T1, -weighted MRI in a clinical setting, even at high field strengths. Magn Reson Med 51:1096,1102, 2004. © 2004 Wiley-Liss, Inc. [source] The role of the interdomain B linker in the activation of the XylR protein of Pseudomonas putidaMOLECULAR MICROBIOLOGY, Issue 2 2000Junkal Garmendia In the presence of toluene and other structural analogues, the enhancer binding protein XylR activates the ,54 promoter Pu of the TOL (toluene degradation) plasmid pWW0 of Pseudomonas putida. Introduction of amino acid changes Val-219Asp and Ala-220Pro, which enter a proline kink at the interdomain region (B linker) between the A (signal reception) module and the central portion of XylR, originated a protein with unforeseen properties. These included a minor ability to activate Pu in the absence of aromatic effectors, a much higher responsiveness to m- xylene and a significant response to a large collection of aromatic inducers. Such changes could not be attributed to variations in XylR expression levels or to the fortuitous creation of a novel promoter, but to a genuine change in the properties of the activator. Structural predictions suggested that the mutation entirely disrupted an otherwise probable coiled-coil structure. A second directed mutant within the same region consisting of a major replacement of amino acids A220,N221 by the peptide HHHR produced an even more exacerbated phenotype. These data support a model in which the linker B region influences the effector profile by modifying at a distance the operative shape of the effector pocket and fixing the protein in an intermediate step of the activation process. [source] Opisthobranch molluscs from the Tertiary of the Aquitaine Basin (south-western France), with descriptions of seven new species and a new genusPALAEONTOLOGY, Issue 3 2000Ángel Valdés An exceptionally well-preserved collection of Tertiary opisthobranch molluscs from the Aquitaine Basin, France, includes species of the order Notaspidea [Umbraculum sanctipaulensis sp. nov., Tylodina perversa (Gmelin), Spiricella unguiculus Rang and Des Moulins, Berthella aquitaniensis sp. nov., Berthella ateles sp. nov.], of the order Anaspidea [Akera cf. bullata Mu¨ller, Floribella corrugata (Cossmann), Floribella cossmanni sp. nov., Floribella rozieri sp. nov., Limondinia ornata gen. et sp. nov.] and of the order Sacoglossa [Volvatella faviae sp. nov.]. BerthellaaquitaniensisB. atelesV. faviae are the first fossil records of the families Volvatellidae and Pleurobranchidae. Floribella plicifera (Cossmann) and F.corrugata, originally assigned to the genus Philine, belong to the genus Floribella and constitute the oldest records of this genus. The fossil evidence indicates that in Umbraculum laudunensis and U. sanctipaulensis the shell probably covered most of the animal, whereas in the Recent U. umbraculum the shell only covers the central portion of the body. Tylodina perversa could be an old species that appeared during the early Miocene, more than 21 Ma. The Recent shells of Akera bullata are indistinguishable from fossils as old as the mid Eocene, but it may be biologically unrealistic to consider them to be the same species. The European species of Floribella evolved from the bullomorph shells of the early Eocene forms to the elongate shells of the early Miocene. The genus Volvatella is another example of marine tropical disjoint distributions and an excellent ecological indicator. [source] Malignant peripheral nerve sheath tumor arising in benign ancient schwannoma: A case report with an immunohistochemical studyPATHOLOGY INTERNATIONAL, Issue 2 2000Yoshiki Mikami A rare example of malignant transformation in an ancient schwannoma arisng in the right side of the neck of a 51-year-old man without any clinical manifestations suggesting neurofibromatosis is described. The tumor, approximately 4 cm at its largest dimension, was well circumscribed and had a direct connection with the sympathetic nerve. Microscopically, the central portion of the tumor showed features of ancient schwannoma characterized by extensive hyalinization with cystic degeneration, scattered spindle cells with hyperchromatic and tapered nuclei, and some symplastic changes. However, predominantly in the outer portion, a proliferation of spindle-shaped cells with enlarged nuclei was present. The nuclei of these cells showed irregular contours, coarse granular chromatin texture, and conspicuous nucleoli. Mitotic figures and small necrotic foci with scattered apoptotic bodies were also seen. Immunohistochemically, S-100 protein was almost negative in areas consisting of overtly atypical cells where the mitotic index evaluated with MIB-1 antibody was 30.5%. In contrast, S-100-positive bland spindle cells were scattered in an extensively hyalinized area with a labeling index less than 3%. P53 protein was strongly positive in atypical spindle cells. Although it is a very uncommon event, definite nuclear atypia, frequent mitotic figures, and the existence of small necrotic foci should be recognized as indicating a diagnosis of malignant degeneration of benign schwannoma. Immunohistochemistry would be useful as an ancillary technique in such a setting. [source] Changes in red cell ion transport, reduced intratumoral neovascularization, and some mild motor function abnormalities accompany targeted disruption of the Mouse Kell gene (Kel),AMERICAN JOURNAL OF HEMATOLOGY, Issue 8 2009Xiang Zhu Kell (ECE-3), a highly polymorphic blood group glycoprotein, displays more than 30 antigens that produce allo-antibodies and, on red blood cells (RBCs), is complexed through a single disulfide bond with the integral membrane protein, XK. XK is a putative membrane transporter whose absence results in a late onset form of neuromuscular abnormalities known as the McLeod syndrome. Although Kell glycoprotein is known to be an endothelin-3-converting enzyme, the full extent of its physiological function is unknown. To study the functions of Kell glycoprotein, we undertook targeted disruption of the murine Kel gene by homologous recombination. RBCs from Kel(,/,) mice lacked Kell glycoprotein, Kell/XK complex, and endothelin-3-converting enzyme activity and had reduced levels of XK. XK mRNA levels in spleen, brain, and testis were unchanged. In Kel(,/,) mice RBC Gardos channel activity was increased and the normal enhancement by endothelin-3 was blunted. Analysis of the microvessels of tumors produced from LL2 cells indicated that the central portion of tumors from wild-type mice were populated with many mature blood vessels, but that vessels in tumors from Kel(,/,) mice were fewer and smaller. The absence of Kell glycoprotein mildly affected some motor activities identified by foot splay on the drop tests. The targeted disruption of Kel in mouse enabled us to identify phenotypes that would not be easily detected in humans lacking Kell glycoprotein. In this regard, the Kell knockout mouse provides a good animal model for the study of normal and/or pathophysiological functions of Kell glycoprotein. Am. J. Hematol., 2009. © 2009 Wiley-Liss, Inc. [source] Pattern of Flower and Fruit Production in Stryphnodendron adstringens, an Andromonoecious Legume Tree of Central BrazilPLANT BIOLOGY, Issue 6 2003P. L. Ortiz Abstract: Patterns of flower and fruit production in racemes of Stryphnodendron adstringens, an andromonoecious Brazilian savanna tree species, were studied in two natural areas near Uberlândia-MG. Racemes were divided in three parts: apex, centre, and base. Number of flowers, gender, and nectar and pollen production were analyzed for each section. Frequency of visitors to each part of the inflorescence was also quantified. Hand self- and cross-pollinations were performed in complete racemes and fruit set used to determine breeding system. The racemes produced a mean of 329 flowers, more densely packed in the central portion. Hermaphrodite and male flowers occur along the inflorescence but hermaphrodite flowers are more common in the centre. Fruit set was markedly low but does not seem to be limited by pollination service, since free open-pollinated racemes and hand cross-pollinated ones do not differ in fruit production rates. Fruits resulted mostly from cross-pollinated flowers and fruit production was biased to the central portion of the raceme. Nectar yield was higher in the central portion of the raceme and visitors arrived more commonly on this portion of the inflorescence. However, most flowers did not produce nectar. The pattern of fruit production seems to be a consequence of the hermaphrodite flower distribution in the raceme and it is not constrained by pollen flow or flower opening sequence. [source] A comparison of muscle- and scale-derived ,13C and ,15N across three life-history stages of Atlantic salmon, Salmo salarRAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 18 2008R. Niloshini Sinnatamby Stable isotope signatures were obtained from paired scale and muscle tissue samples from smolt, post-smolt and one-sea-winter adult Atlantic salmon (Salmo salar). Post-smolt and adult scales were separated into central and outer (marine) portions with analyses carried out on the marine growth section of both life-history stages and the central portion for the adult scales. Muscle and scale ,13C and ,15N signatures were assessed (1) to determine whether a linear relationship exists between tissue types, (2) to determine if a constant offset exists between tissue signatures across all life-history stages, and (3) to evaluate whether underplating imparts a significant bias to life-history scale segments that would preclude their use in retrospective analyses of any ontogenetic dietary changes between life-history stages. Significant correlations were found to exist between muscle and scale stable isotope signatures obtained from smolts (,13C and ,15N) and adults (,15N). Both the muscle and the scale signatures captured the dietary shift associated with the transition from freshwater to the marine environment. Post-smolt and adult scales were depleted relative to muscle tissue, which may be attributed to isotopic differences in amino acid composition between muscle and scale tissues. The results suggest that scales may better represent dietary carbon sources because they are not influenced by lipid dynamics. The scale, however, appears less responsive to short-term shifts in diet relative to muscle and, therefore, must be used only to infer seasonally integrated dietary patterns for slow-growing life-history stages. Copyright © 2008 John Wiley & Sons, Ltd. [source] Estrogen configures sexual dimorphism in the preoptic area of C57BL/6J and ddN strains of miceTHE JOURNAL OF COMPARATIVE NEUROLOGY, Issue 17 2010Chitose Orikasa Abstract Immunohistochemistry using a calbindin D28k antibody revealed a marked sex difference in neuronal distribution in the central portion of the medial preoptic area in C57BL/6J and ddN strains of mice when the animals were sacrificed on D65 (D1 = the day of birth). Male mice had a distinct ellipsoidal cell aggregate, whereas females lacked such a structure. This sex difference was not observed in Nissl-stained sections. Co-localization of calbindin D28k and the neuron-specific nuclear protein NeuN confrmed that the cells in the aggregate were neurons. The aggregates were larger in males than in females in both strains. When observed on D65, males orchidectomized on D1 had smaller aggregates. However, daily injections of 2 ,g estradiol benzoate through D1,D5 as well as a single injection of 100 ,g testosterone propionate on D1 enlarged the aggregates in females, but a single injection of 100 ,g dihydrotestosterone on D1 had no effect on the female phenotype. Similar endocrine manipulations had no effects in adult animals of both sexes. Thus, the calbindin-immunoreactive cell aggregates in the preoptic area of C57BL/6J and ddN mice are homologous to the sexually dimorphic nucleus of the rat preoptic area in terms of the morphology and sex steroid-dependent organization. J. Comp. Neurol. 518:3618,3629, 2010. © 2010 Wiley-Liss, Inc. [source] The Presence of Megamitochondria in the Ellipsoid of Photoreceptor Inner Segment of the Zebrafish RetinaANATOMIA, HISTOLOGIA, EMBRYOLOGIA, Issue 6 2005J. Kim Summary Although the megamitochondria (MM) were localized in various pathological conditions, normal retina of some mammalian species was reported to include MM for various physiological roles. However, it was not clearly confirmed whether the MM is present in the retina of lower vertebrate as well. In this study, we tried to show the presence of the MM in the zebrafish retina using electron microscopic technique. In all the photoreceptors including rods, cones and double cones of the zebrafish retina, MM were observed in the ellipsoid of inner segment. In the photoreceptor epllipsoid of the zebrafish retina, the mitochondria located in the central portion of the ellipsoid had a highly electron-dense matrix, which were accompanied by the mitochondria with electron-lucent matrix in the apical portion of the ellipsoid. The presence of MM was more clearly discernable in the rods, which were localized under the double cones. This finding is somewhat different from those observed in the previous studies because MM were localized in the inner segment of cones, but were not in those of rods in the case of mammalian retina. Although the exact physiological meaning for the presence of MM in some vertebrate species should be further studied, the present study could show that the MM in the ellipsoid of the retinal photoreceptors was not only restricted in some mammalian species. [source] Nodal marginal zone B-ceil lymphoma resembling plasmacytoma arising from a plasma cell variant of localized Castleman's diseaseAPMIS, Issue 7-8 2002a case report Nodal marginal zone B-cell lymphoma (NMZBL) occasionally represents prominent plasma cell differentiation. Recently, primary lymph node plasmacytoma has been suggested to represent an extremely plasmacytic differentiation of NMZBL. We here report a case of NMZBL showing histological features resembling plasmacytoma arising from a plasma cell variant of localized Castleman's disease (PCLCD). The patient was a 69-year-old Japanese female with a 20-year history of a right inguinal mass. Histologically, a prominent proliferation of plasma cells occupied the interfollicular area of the central portion of the lymph node, whereas centrocyte-like (CCL) cells were the main cellular component in the peripheral portion of the lymph node. Although most of the plasma cells were mature ,Marshalko-type', occasional atypical forms with enlarged nuclei were also present. The majority of the lymphoid follicles had atrophic or regressive germinal centers. A few lymphoid follicles were colonized by CCL cells. Immunohistochemistry study revealed that both plasma cells and some CCL cells had a monotypic intracytoplasmic lambda light chain. When monoclonal plasma cell infiltration is observed in PCLCD, the light chains are mostly restricted to the lambda chain. This case suggests that some plasma cell-containing tumors arising from PCLCD may represent a variant of NMZBL. [source] Organization and sequence of four flagellin-encoding genes of Edwardsiella ictaluriAQUACULTURE RESEARCH, Issue 10 2009Victor S Panangala Abstract Edwardsiella ictaluri, the cause of enteric septicaemia in channel catfish (Ictalurus punctatus), is motile by means of peritrichous flagella. We determined the complete flagellin gene sequences and their organization in E. ictaluri by sequencing genomic segments from a ,-ZAP phage genomic library of E. ictaluri. Four flagellin genes (fliC1, fliC2, fliC3 and fliC4) are arranged in tandem within 6 kb in the E. ictaluri genome. Each flagellin-coding sequence is preceded by a ,28 recognition site consensus sequence. The predicted amino acid sequences of all four flagellin proteins (between 36 and 37.5 kDa) are similar in the N-terminal (1,160 aa) and C-terminal (last 74 aa) portions and are divergent in the central portion of the proteins. Proteins encoded by flC1, fliC2 and fliC3 are more similar to each other (88,90% aa identity) than to the protein encoded by fliC4 (76,78% aa identity). basic local alignment search tool analysis of GenBank sequences showed that all flagellin aa sequences are more similar to those of Serratia marcescens (72,74% identity) than to those of Edwardsiella tarda (,64% identity). Primary determination of E. ictaluri flagellin gene sequences facilitate advanced studies on the role of flagella in host,pathogen interaction. [source] Geophysical study of a Pre-Hispanic lakeshore settlement, Chiconahuapan Lake, MexicoARCHAEOLOGICAL PROSPECTION, Issue 1 2010R. E. Chávez Abstract Results of a combined geophysical survey carried out along the northern shore of Lake Chiconahuapan in central Mexico are presented. The site contains a series of mounds found between the lakeshore and the ceremonial centre named La Campana-Tepozoco Hill. Those features are the remains of habitation complexes built by the lake residents about 1100 years ago. Archaeological excavations performed towards the northeastern margins of the lake uncovered rectangular clusters of basaltic rocks forming the foundations of ancient dwellings, surrounded by a barrier (,bordo'), built to prevent floods. A mound located close to the ceremonial centre was studied using the vertical magnetic gradient (VMG), ground-penetrating radar (GPR) and electric tomography (ET) methods. Interesting magnetic anomalies were found towards the central portion of the mound and one of these was modelled with a three-dimensional magnetic polygon. The GPR studies unveiled a circular feature in the central portion of the mound that could be associated with a bordo. A rectangular structure was also interpreted within the limits of that structure, which is probably the location of ancient dwelling foundations. Electric tomography profiles were collected in the area, around the VMG anomaly. The resistivity model computed shows the presence of a high-resistivity layer, which displays discontinuities within the area defined by the bordo. Presumably, the ancient settlers built their constructions on top of this horizon. The geophysical results reveal a rather complex habitat within the mound. The larger size of the bordo (ca. 30,m in diameter) compared with others already studied by archaeologists makes us believe that the purpose of the site was of administrative use or hosted a wealthy group of people. Dwelling foundations are found within the limits of the barrier. Copyright © 2009 John Wiley & Sons, Ltd. [source] The structure of d(CACACG)·d(CGTGTG)ACTA CRYSTALLOGRAPHICA SECTION F (ELECTRONIC), Issue 1 2009S. Venkadesh The crystal structure of d(CACACG)·d(CGTGTG) was solved to a resolution of 2.05,Å in space group P21. The duplex assumes the left-handed Z-DNA structure. The presence of two A·T base pairs in the hexamer does not greatly affect the conformation. The most significant changes compared with the regular structure of Z-DNA are in the values of twist in the central portion of the helix. This variation, as well as others in the values of roll, inclination etc., follow the pattern observed previously in the structure of d(CGCACG)·d(CGTGCG). [source] | ||||||||||||||||||||||||||||||||||