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Cell Biomass (cell + biomass)
Selected AbstractsPrediction of uptake dynamics of persistent organic pollutants by bacteria and phytoplanktonENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 10 2002Sabino Del Vento Abstract Phytoplankton and bacteria play an important role on the biogeochemical cycles of persistent organic pollutants (POPs). However, experimental data and quantitative knowledge of the kinetics of uptake and depuration of most POPs by bacteria and phytoplankton are scarce. In the present paper, a procedure to predict the sorption kinetics to bacteria and phytoplankton is developed. The prediction method is the combination of a mechanistic model for sorption and quantitative structure,activity relationships relating bioconcentration factors and membrane permeability to the chemical physical-chemical properties. The model consists of two compartments where the first compartment is the cellular surface and the second compartment is the cell biomass or matrix. Equations for estimating uptake and depuration rate constants into the matrix and adsorption and desorption rate constants onto the surface are obtained. These expressions depend on the physical-chemical properties of the chemical, the environmental temperature, the microorganism size, and species-specific quality of organic matter. While microorganism shape has a secondary influence on uptake dynamics, microorganism size and chemical hydrophobicity arise as the key factors controlling the kinetics of POP incorporation into bacteria and plankton. Uptake, depuration, adsorption, and desorption rate constants are reported for POPs such as polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), polychlorinated dioxins and furans (PCDD/Fs), and POPs of emerging concern, such as polybrominated diphenyl ethers (PBDEs). Finally, implications of uptake and depuration dynamics on the biogeochemical cycling of POPs are discussed. [source] Role of reserve carbohydrates in the growth dynamics of Saccharomyces cerevisiae,FEMS YEAST RESEARCH, Issue 8 2004Vincent Guillou Abstract The purpose of this study was to explore the role of glycogen and trehalose in the ability of Saccharomyces cerevisiae to respond to a sudden rise of the carbon flux. To this end, aerobic glucose-limited continuous cultures were challenged with a sudden increase of the dilution rate from 0.05 to 0.15 h,1. Under this condition, a rapid mobilization of glycogen and trehalose was observed which coincided with a transient burst of budding and a decrease of cell biomass. Experiments carried out with mutants defective in storage carbohydrates indicated a predominant role of glycogen in the adaptation to this perturbation. However, the real importance of trehalose in this response was veiled by the unexpected phenotypes harboured by the tps1 mutant, chosen for its inability to synthesize trehalose. First, the biomass yield of this mutant was 25% lower than that of the isogenic wild-type strain at dilution rate of 0.05 h,1, and this difference was annulled when cultures were run at a higher dilution rate of 0.15 h,1. Second, the tps1 mutant was more effective to sustain the dilution rate shift-up, apparently because it had a faster glycolytic rate and an apparent higher capacity to consume glucose with oxidative phosphorylation than the wild type. Consequently, a tps1gsy1gsy2 mutant was able to adapt to the dilution rate shift-up after a long delay, likely because the detrimental effects from the absence of glycogen was compensated for by the tps1 mutation. Third, a glg1,glg2, strain, defective in glycogen synthesis because of the lack of the glycogen initiation protein, recovered glycogen accumulation upon further deletion of TPS1. This recovery, however, required glycogen synthase. Finally, we demonstrated that the rapid breakdown of reserve carbohydrates triggered by the shift-up is merely due to changes in the concentrations of hexose-6-phosphate and UDPglucose, which are the main metabolic effectors of the rate-limiting enzymes of glycogen and trehalose pathways. [source] Cloning and expression of Bacillus phytase gene (phy) in Escherichia coli and recovery of active enzyme from the inclusion bodiesJOURNAL OF APPLIED MICROBIOLOGY, Issue 4 2008D.E.C.S. Rao Abstract Aims:, To isolate, clone and express a novel phytase gene (phy) from Bacillus sp. in Escherichia coli; to recover the active enzyme from inclusion bodies; and to characterize the recombinant phytase. Methods and Results:, The molecular weight of phytase was estimated as 40 kDa on SDS-polyacrylamide gel electrophoresis. A requirement of Ca2+ ions was found essential both for refolding and activity of the enzyme. Bacillus phytase exhibited a specific activity of 16 U mg,1 protein; it also revealed broad pH and temperature ranges of 5·0 to 8·0 and 25 to 70°C, respectively. The Km value of phytase for hydrolysis of sodium phytate has been determined as 0·392 mmol l,1. The activity of enzyme has been inhibited by EDTA. The enzyme exhibited ample thermostability upon exposure to high temperatures from 75 to 95°C. After 9 h of cultivation of transformed E. coli in the bioreactor, the cell biomass reached 26·81 g wet weight (ww) per l accounting for 4289 U enzyme activity compared with 1·978 g ww per l producing 256 U activity in shake-flask cultures. In silico analysis revealed a ,-propeller structure of phytase. Conclusions:, This is the first report of its kind on the purification and successful in vitro refolding of Bacillus phytase from the inclusion bodies formed in the transformed E. coli. Significance and Impact of the Study:, Efficient and reproducible protocols for cloning, expression, purification and in vitro refolding of Bacillus phytase enzyme from the transformed E. coli have been developed. The novel phytase, with broad pH and temperature range, renaturation ability and substrate specificity, appears promising as an ideal feed supplement. Identification of site between 179th amino acid leucine and 180th amino acid asparagine offers scope for insertion of small peptides/domains for production of chimeric genes without altering enzyme activity. [source] Marine yeast diet confers better protection than its cell wall component (1-3)-,- d -glucan as an immunostimulant in Fenneropenaeus indicusAQUACULTURE RESEARCH, Issue 15 2009Thavarool Puthiyedathu Sajeevan Abstract A comparative study was performed to evaluate the immunostimulatory effect of yeast and yeast-derived glucan in white prawn Fenneropenaeus indicus (sub-adults of ,20 gm). Feed with a whole cell biomass of marine yeast Candida sake S165 (CSY) at a concentration of 10% (w/w) and another feed with 0.2% glucan of C. sake S165 (CSG) were used in the study. Fenneropenaeus indicus were fed with these diets for 40 days and subsequently challenged with the white spot syndrome virus (WSSV). Haematological parameters such as the total haemocyte count, phenoloxidase activity, superoxide anion (O2,) level, haemolymph peroxidase level and post-challenge survival against WSSV infection were determined to assess the immune status. In the present experiment, a higher immunity index and post-challenge survival were recorded in shrimps fed with the whole cell yeast diet. The better immunostimulatory performance of the whole cell yeast diet compared with the glucan diet could be attributed to the cellular constituents of yeast including the cell wall glucan, nucleotides, carotenoid pigments and vitamins. Here we observed that whole cell yeast performed better as an immunostimulant than the extracted cell wall glucans. Therefore, the use of yeast biomass in diets, rather than the yeast cell wall extract, glucan, would confer better protection against microbial infection besides reducing the cost of shrimp production. [source] Uptake and biotransformation of 2,4,6-trinitrotoluene (TNT) by microplantlet suspension culture of the marine red macroalga Portieria hornemanniiBIOTECHNOLOGY & BIOENGINEERING, Issue 3 2006Octavio Cruz-Uribe Abstract Microplantlets of the marine red macroalga Portieria hornemannii efficiently removed the explosive compound 2,4,6-trinitrotoluene (TNT) from seawater. Photosynthetic, axenic microplantlets (1.2 g FW/L) were challenged with enriched seawater medium containing dissolved TNT at concentrations of 1.0, 10, and 50 mg/L. At 22°C and initial TNT concentrations of 10 mg/L or less, TNT removal from seawater was 100% within 72 h, and the first-order rate constant for TNT removal ranged from 0.025 to 0.037 L/gFW h under both illuminated conditions (153 µE/m2s, 14:10 LD photoperiod) and dark conditions. Two immediate products of TNT biotransformation, 2-amino-4,6-dinitrotoluene and 4-amino-2,6-dintrotoluene, were identified in the liquid culture medium, with a maximum material balance recovery of 29 mole%. Only trace levels of these products and residual TNT were found within the fresh cell biomass. Removal of TNT by P. hornemannii microplantlets at initial concentrations of 1.0 or 10 mg/L did not affect the respiration rate. At an initial TNT concentration of 10 mg/L, net photosynthesis decreased towards zero, commensurate with the removal of dissolved TNT from seawater, whereas at an initial TNT concentration of 1.0 mg/L, the net photosynthesis rate was not affected. © 2005 Wiley Periodicals, Inc. [source] A multikinetic model approach to predict gluconic acid production in an airlift bioreactorBIOTECHNOLOGY JOURNAL, Issue 5 2007Mukesh Mayani Abstract This paper uses a multikinetic approach to predict gluconic acid (GA) production performance in a 4.5 L airlift bioreactor (ALBR). The mathematical model consists of a set of simultaneous firstorder ordinary differential equations obtained from material balances of cell biomass, GA, glucose, and dissolved oxygen. Multikinetic models, namely, logistic and contois equations constitute kinetic part of the main model. The main model also takes into account the hydrodynamic and mass transfer parameters. These equations were solved using ODE solver of MATLAB v6.5 software. The mathematical model was validated with the experimental data available in the literature and is used to predict the effect of change in initial biomass and air sparging rate on the GA production. It is concluded that the mathematical model incorporated with multikinetic approach would be more efficient to predict the change in operating parameters on overall bioprocess of GA production in an ALBR. [source] Production and Characterization of Poly-,-hydroxyalkanoate Copolymers from Burkholderiacepacia Utilizing Xylose and Levulinic AcidBIOTECHNOLOGY PROGRESS, Issue 6 2004Thomas M. Keenan Poly(,-hydroxybutyrate - co -,-hydroxyvalerate) (P(3HB - co -3HV)) copolymers were prepared via shake-flask fermentations of Burkholderia cepacia(formerly Pseudomonas cepacia) containing 2.2% (w/v) xylose and concentrations of levulinic acid ranging from 0.07% to 0.67% (w/v). Periodic harvest of shake-flask cultures from 48 to 92 h post-inoculation yielded 4.4,5.3 g/L of dry cell biomass, containing 42,56% (w/w) P(3HB - co -3HV), with optimal product yield occurring between 66 and 74 h. Growth and PHA accumulation enhancement were observed with concentrations of levulinic acid from 0.07 to 0.52% (w/v), producing dry cell biomass and P(3HB - co -3HV) yields of 9.5 and 4.2 g/L, respectively, at the 0.52% (w/v) concentration of levulinic acid. Representative samples were subjected to compositional analysis by 300 MHz 1H and 150 MHz 13C NMR, indicating that these random copolymers contained between 0.8 and 61 mol % 3-hydroxyvalerate (3HV). Solvent-cast film samples were characterized by differential scanning calorimetry, which demonstrated melting temperatures ( Tm) to decrease in a pseudoeutectic fashion from 174.3 °C (0.8 mol % 3HV) to a minimum of 154.2 °C (25 mol % 3HV) and the glass transition temperatures ( Tg) to decrease linearly from 2.1 to ,11.9 °C as a function of increasing mol % 3HV. Thermogravimetric analysis of the copolymer series showed the temperature for onset of thermal decomposition ( Tdecomp) to vary as a function of mol % 3HV from 273.4 to 225.5 °C. Intrinsic viscosities (,) varied from 3.2 to 5.4 dL/g, as determined by dilute solution viscometry. Viscosity average molecular weights ( Mv) of the copolymers were determined to range from 469 to 919 kDa, indicating that these P(3HB - co -3HV) copolymers are of sufficient molecular mass for commercial application. [source] | ||||||||||