|
| ||
|
|
||
Presence/absence Data (absence + data)
Kinds of Presence/absence Data Selected AbstractsModern pollen,vegetation relationships in subarctic southern Greenland and the interpretation of fossil pollen data from the Norse landnámJOURNAL OF BIOGEOGRAPHY, Issue 3 2007J. Edward Schofield Abstract Aim, The objective of this paper is to explore the relationships that exist between vegetation and modern pollen rain in the open, largely treeless landscape of subarctic Greenland. The implications of these results for the interpretation of fossil pollen assemblages from the time of the Norse landnám are then examined. Location, The study area is the sheep farming district of Qassiarsuk in the subarctic, subcontinental vegetational and climatic zone of southern Greenland (61° N, 45° W). Between c.ad 1000,1500 this region was contained within the Norse Eastern Settlement. Methods, Detrended Correspondence Analysis (DCA) of harmonized plant,pollen data sets is used to compare plant cover in 64 vegetation quadrats with pollen assemblages obtained from moss polsters at matching locations. Presence/absence data are also used to calculate indices of association, over- and under-representation for pollen types. Results, Good correspondence between paired vegetation,pollen samples occurs in many cases, particularly in locations where Salix glauca,Betula glandulosa dwarf shrub heath is dominant, and across herbaceous field boundaries and meadows. Pollen samples are found to be poor at reflecting actual ground cover where ericales or Juniperus communis are the locally dominant shrubs. Dominant or ubiquitous taxa within this landscape (Betula, Salix and Poaceae) are found to be over-represented in pollen assemblages, as are several of the ,weeds' generally accepted as introduced by the Norse settlers. Main conclusions, Due to their over-representation in the pollen rain, many of the Norse apophytes and introductions (e.g. Rumex acetosa and R. acetosella) traditionally used to infer human activity in Greenland should be particularly sensitive indicators for landnám, allowing early detection of Norse activity in fossil assemblages. Pteridophyte spores are found to be disassociated with the ground cover of ferns and clubmosses, but are over-represented in pollen assemblages, indicating extra-local or regional sources and long residence times in soil/sediment profiles for these microfossils. A pollen record for Hordeum -type registered in close proximity to a field containing barley suggests that summer temperatures under the current climatic regime are, at least on occasion, sufficient to allow flowering. [source] Patch Occupancy and Potential Metapopulation Dynamics of Three Forest Mammals in Fragmented Afromontane Forest in South AfricaCONSERVATION BIOLOGY, Issue 4 2000Michael J. Lawes We recorded patch occupancy of blue duiker ( Philantomba monticola), tree hyrax ( Dendrohyrax arboreus), and samango monkey (Cercopithecus mitis labiatus) in 199 forest patches. Their rarity is ascribed to the fragmentation and destruction of their forest habitat. Incidence functions, derived from presence and absence data, were formulated as generalized linear models, and environmental effects were included in the fitted logistic models. The small and mostly solitary hyrax and duiker persisted in smaller patches than the large and social monkey. Although this result follows expectations based on relative home-range sizes of each species, the incidence probability of the samango monkey was invariant with increasing isolation, whereas a gradual decrease with increasing isolation was observed for the hyrax and duiker. Group dynamics may inhibit dispersal and increase the isolation effect in social species such as samango monkeys. A mainland-island metapopulation model adequately describes patterns of patch occupancy by the hyrax and duiker, but the monkeys' poor dispersal ability and obvious area-dependent extirpation suggest that they exist in transient, nonequilibrium (declining) metapopulations. Through identification of large forest patches for careful protection and management, the survival of all three species,especially the monkey,could be prolonged. Because no functional metapopulation may exist for the monkey, however, this is an emergency measure. For the duiker and hyrax, larger patches should form part of a network of smaller and closer patches in a natural matrix. Resumen: Investigamos la persistencia de tres mamíferos forestales raros de tamaño mediano (2,9 kg) en los bosques fragmentados de cinturón de niebla Podocarpus en la región central de la provincia KwaZulu-Natal, Sudáfrica. Registramos la ocupación del duiker azul ( Philantomba monticola), el hyrax arborícola ( Dendrohyrax arboreus) y el mono samango (Cercopithecus mitis labiatus) en 199 parches forestales. Su rareza se atribuye a la fragmentación y destrucción de su hábitat forestal. Las funciones de incidencia, derivadas de datos de presencia y ausencia, fueron formuladas como modelos lineales generalizados, y los efectos ambientales fueron incluidos en los modelos logísticos ajustados. Los pequeños y mayormente solitarios hyrax y duiker persistieron en parches más pequeños que los monos, que son más grandes y más sociables. A pesar de que este resultado obedece a expectativas basadas en tamaños de rango de hogar relativos de cada especie, la probabilidad de incidencia del mono samango no cambió con un incremento en el aislamiento, mientras que una disminución gradual al crecer el aislamiento se observó en hyrax y duiker. Las dinámicas de grupos podrían inhibir la dispersión e incrementar el efecto de aislamiento en especies sociables como lo es el mono samango. Un modelo de metapoblación continente-isla describe adecuadamente los patrones de la ocupación de parches por hyrax y duiker; sin embargo, la pobre capacidad de dispersión de los monos y la obvia extirpación área-dependente sugiere que estos existen en metapoblaciones transitorias, desequilibradas (en disminución). Mediante la identificación de parches forestales grandes para la protección y manejo cuidadosos, la supervivencia de las tres especies ( pero especialmente la de los monos) podría ser prolongada. Sin embargo, debido a que no existen metapoblaciones funcionales de monos, esta es una medida de emergencia. Para el duiker y el hyrax, los parches grandes deberán formar parte de una red de parches más pequeños y más cercanos en una matriz natural. [source] Predicting species distributions from museum and herbarium records using multiresponse models fitted with multivariate adaptive regression splinesDIVERSITY AND DISTRIBUTIONS, Issue 3 2007Jane Elith ABSTRACT Current circumstances , that the majority of species distribution records exist as presence-only data (e.g. from museums and herbaria), and that there is an established need for predictions of species distributions , mean that scientists and conservation managers seek to develop robust methods for using these data. Such methods must, in particular, accommodate the difficulties caused by lack of reliable information about sites where species are absent. Here we test two approaches for overcoming these difficulties, analysing a range of data sets using the technique of multivariate adaptive regression splines (MARS). MARS is closely related to regression techniques such as generalized additive models (GAMs) that are commonly and successfully used in modelling species distributions, but has particular advantages in its analytical speed and the ease of transfer of analysis results to other computational environments such as a Geographic Information System. MARS also has the advantage that it can model multiple responses, meaning that it can combine information from a set of species to determine the dominant environmental drivers of variation in species composition. We use data from 226 species from six regions of the world, and demonstrate the use of MARS for distribution modelling using presence-only data. We test whether (1) the type of data used to represent absence or background and (2) the signal from multiple species affect predictive performance, by evaluating predictions at completely independent sites where genuine presence,absence data were recorded. Models developed with absences inferred from the total set of presence-only sites for a biological group, and using simultaneous analysis of multiple species to inform the choice of predictor variables, performed better than models in which species were analysed singly, or in which pseudo-absences were drawn randomly from the study area. The methods are fast, relatively simple to understand, and useful for situations where data are limited. A tutorial is included. [source] ModEco: an integrated software package for ecological niche modelingECOGRAPHY, Issue 4 2010Qinghua Guo ModEco is a software package for ecological niche modeling. It integrates a range of niche modeling methods within a geographical information system. ModEco provides a user friendly platform that enables users to explore, analyze, and model species distribution data with relative ease. ModEco has several unique features: 1) it deals with different types of ecological observation data, such as presence and absence data, presence-only data, and abundance data; 2) it provides a range of models when dealing with presence-only data, such as presence-only models, pseudo-absence models, background vs presence data models, and ensemble models; and 3) it includes relatively comprehensive tools for data visualization, feature selection, and accuracy assessment. [source] Fish assemblages as influenced by environmental factors in streams in protected areas of the Czech RepublicECOLOGY OF FRESHWATER FISH, Issue 1 2006M. Humpl Abstract,,, Three streams of comparable size located in different landscape-protected areas were selected for studying the effect of environmental factors on fish assemblages using indirect (detrended correspondence analysis, DCA) and direct (canonical correspondence analysis, CCA) gradient analysis. DCA of species showed well a gradient of assemblage changes in the longitudinal profile. DCA of sites stressed the variability between the fish assemblages of the three streams. This pattern was then confirmed by the highly significant between-stream CCA. In the within-site CCA, environmental factors explained 50.7% variability for presence,absence data and 58.3% for the relative abundance data. The analysis revealed that number of ponds and land use are the most influential factors of the strongest environmental gradient. However, in the partial CCAs, factor substratum type explained the largest proportion of the variability affecting fish in their habitat choice. Generally, presence,absence and relative abundance data of fish gave similar results in both DCA and CCA analyses; the same environmental factors proved to be important in both data type analyses. The environmental factors explain more variability than the regional (between-stream) one. The total proportion of variability explained by the presence,absence data analysis was 71.9% and in the relative abundance analysis even 80.8%. The environmental factors measured during the field survey explain 2.1- and 3.4-times more assemblages' variability than factors measured from a hydrological map. Resumen 1. Tres ríos de tamaño comparable localizados en diferentes áreas de paisaje protegido de la República Checa fueron seleccionados para estudiar el efecto de factores ambientales sobre los ensamblajes de peces. Para ello, utilizando análisis de gradientes indirectos (DCA) y directos (CCA). 2. El DCA para las especies enfatizó la variabilidad entre los ensamblajes de peces de los tres ríos. Este patrón fue confirmado por un CCA altamente significativo. Para la variabilidad dentro de la localidad, un CCA reveló que los factores ambientales explicaron un 50.7% para datos de presencia-ausencia y un 58.3% para las abundancias relativas. 3. Los análisis revelaron que el número de pozas y el uso del suelo fueron los factores de mayor influencia en el gradiente ambiental. Sin embargo, en el CCA parcial, el tipo de sustrato explicó la mayor proporción de la variabilidad que afecta a los peces en la elección de hábitat. 4. Generalmente los datos de presencia-ausencia y abundancia relativa produjeron resultados similares tanto en los análisis DCA como en los CCA; los mismos factores ambientales probaron ser importantes en los análisis de ambos tipos de datos. Los factores ambientales explicaron mas variabilidad que los regionales (entre ríos). La proporción total de variabilidad explicada por el análisis de los datos de presencia-ausencia fue 71.9% mientras que para las abundancias relativas fue de 80.8%. Los factores ambientales medidos durante los muestreos de campo explicaron 2.1 y 3.4 veces mas variabilidad que los factores medidos sobre mapas hidrológicos. [source] A cautionary note on the use of species presence and absence data in deriving sediment criteriaENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 2 2002Katherine Von Stackelberg Abstract In recent years, a variety of approaches to deriving sediment quality guidelines have been developed. One approach relies on establishing an empirical relationship between the concentration of a contaminant in sediment and the condition of some biological indicator, for example, combining measured sediment concentrations of contaminants combined with data on colocated benthic species to measure in situ community effects of contamination. Biological threshold concentrations derived in this manner are being considered or have already been adopted by some regulatory agencies as a means for deriving sediment guidelines (e.g., Canada's Provincial Sediment Quality Guidelines). In order to test the validity of this method, we constructed several Monte Carlo simulations to illustrate that the methodology used to develop these guidelines is flawed by the effects of sampling and statistical artifacts that emerge from undersampling a lognormal density function. As a case study, this paper will present the screening level concentration method used by the Ontario Ministry of the Environment (Toronto, ON, Canada) and provide the results of several probabilistic exercises highlighting these issues. We present a word of caution on the applicability of methods that rely exclusively on statistical and mathematical relationships between invertebrate data and sediment concentrations to derive sediment quality guidelines. [source] Functional biotic homogenization of bird communities in disturbed landscapesGLOBAL ECOLOGY, Issue 2 2008Vincent Devictor ABSTRACT Aim, Worldwide, functional homogenization is now considered to be one of the most prominent forms of biotic impoverishment induced by current global changes. Yet this process has hardly been quantified on a large scale through simple indices, and the connection between landscape disturbance and functional homogenization has hardly been established. Here we test whether changes in land use and landscape fragmentation are associated with functional homogenization of bird communities at a national scale. Location, France. Methods, We estimated functional homogenization of a community as the average specialization of the species present in that community. We studied the spatial variation of this community specialization index (CSI) using 1028 replicates from the French Breeding Bird Survey along spatial gradients of landscape fragmentation and recent landscape disturbance, measured independently, and accounting for spatial autocorrelation. Results, The CSI was very sensitive to both measures of environmental degradation: on average, 23% of the difference in the CSI values between two sample sites was attributed to the difference in fragmentation and the disturbance between sites. This negative correlation between CSI and sources of landscape degradation was consistent over various habitats and biogeographical zones. Main conclusions, We demonstrate that the functional homogenization of bird communities is strongly positively correlated to landscape disturbance and fragmentation. We suggest that the CSI is particularly effective for measuring functional homogenization on both local and global scales for any sort of organism and with abundance or presence,absence data. [source] Community assemblage patterns of odonates inhabiting a wetland complex influenced by anthropogenic disturbanceINSECT CONSERVATION AND DIVERSITY, Issue 2 2009BRYAN A. REECE Abstract., 1Many wetland complexes around the world are highly influenced by human activity (chiefly land conversion for agriculture). Measuring the impact of such activity hinges not only upon using appropriate wetland indicator taxa but also upon metrics that are sensitive enough to capture subtle effects. 2Over a 5-year period, we quantified the distribution and community structure of odonates (dragonflies and damselflies) occupying a wetland complex in Texas. When using traditional community metrics, there were no significant differences in diversity or evenness in the odonate assemblages in wetlands surrounded by the two dominant regional forms of land use (tilled cropland and grassland). Similarity analyses likewise failed to detect any significant differences in odonate community composition with land use. 3Discriminant function analysis, however, revealed that species co-occurrences could be distinguished on the basis of surrounding land use, which indicates that odonate assemblages in these wetlands are structured in a manner that typical community metrics fail to adequately describe. 4Differences between the approaches are discussed, particularly with regard to the use of presence,absence data. [source] Isotopic tracking of prehistoric pinniped foraging and distribution along the central California coast: preliminary resultsINTERNATIONAL JOURNAL OF OSTEOARCHAEOLOGY, Issue 1 2002R. K. Burton Abstract Zooarchaeological data from Monterey Bay and the adjacent central California coast corroborate earlier observations from northern California and Oregon that Callorhinus ursinus (northern fur seal) was a much more common component in prehistoric marine mammal prey than its present pelagic distribution and foraging habits would predict. C. ursinus remains from mid-Holocene Monterey Bay occurrences are predominantly from female individuals, associated with an inshore piscifauna, and lack associated artifactual evidence for deep water exploitation. Taken together with evidence from Oregon, this suggests that mid-Holocene C. ursinus populations had different foraging, resting, and, arguably, reproductive behaviours than historically reported. Currently debated is whether the contrast between prehistoric and present patterns of pinniped species representation results from: 1) late Holocene prehistoric resource depression by aboriginal hunters, 2) depredations of the early historic fur trade, or 3) non-anthropogenic climatic or oceanographic change. The issue has thus far been addressed with presence or absence data on pinniped species and age/sex classes in dated contexts. While these are fundamental data, they cannot shed light on the nature of foraging behaviour of the species in question, a key dimension of the problem. This paper reports a pilot study utilizing stable isotope analysis aimed to elucidate prehistoric pinniped foraging patterns, specifically that of C. ursinus. Elements from six archaeological sites in Monterey and Santa Cruz counties were analysed for stable isotope compositions of carbon and nitrogen in bone collagen and compared to a latitudinally ordered modern dataset. Results for archaeological C. ursinus strongly suggest that prehistoric animals habitually foraged at lower latitudes than characterize the species today, supporting earlier claims of their year-round residency south of Alaska. Copyright © 2002 John Wiley & Sons, Ltd. [source] Using individual-based simulations to test the Levins metapopulation paradigmJOURNAL OF ANIMAL ECOLOGY, Issue 2 2002Matt J. Keeling Summary 1,Levins metapopulations have become a standard tool for modelling spatially heterogeneous populations. The acceptance of these models by ecologists may be attributed to their simple structure and their use of presence,absence data. 2,Using structured-metapopulations, which possess stochastic dynamics at the local subpopulation level, the extinction and subsequent recolonization rates can be calculated and compared to those of the classical Levins model. 3,Single-species metapopulations conform to the Levins ideal, validating the widespread use of this conceptual model. However, multispecies systems are shown to deviate in a consistent manner. This deviation, which is explained in terms of a correlation between patch occupancy and average population levels of the species, can be used to identify the signature of enemy,victim interactions. [source] The occurrence of commensal rodents in dwellings as revealed by the 1996 English House Condition SurveyJOURNAL OF APPLIED ECOLOGY, Issue 4 2001S.D. Langton Summary 1,The presence of commensal rodents was assessed in the 1996 English House Condition Survey (EHCS). Logistic regression techniques were used to identify the key factors that might determine the susceptibility of dwellings to infestation. 2,The overall percentages of dwellings that were infested, weighted to allow for the more intensive sampling used in certain categories of dwellings, were 1·83% for mice Mus domesticus, 0·23% for rats Rattus norvegicus living indoors and 1·60% for rats living outdoors. These figures excluded vacant properties, properties with some commercial use, and purpose-built flats, as these groups showed different patterns of infestation and were therefore excluded from the logistic regressions. 3,The prevalence of both rats and mice was significantly greater for dwellings where pets or livestock were kept in the garden. 4,Dwellings classed as unfit for human habitation were more likely to be infested with mice. 5,Dwellings in areas of low-density housing had a significantly higher prevalence of both rat and mouse infestation. This probably reflects the general suitability of the rural environment for commensal rodents. 6,Older properties had a relatively high prevalence of rats. This may be because their mature gardens provided suitable habitats for colonization. Once other confounding factors were taken into account, the age of the property did not influence the rate of infestation by mice. 7,Dwellings in areas with substantial problems, such as dereliction, litter, vacant properties and unkempt gardens, had a significantly higher prevalence of rats and mice. 8,This study reveals the value of applied ecological techniques, including logistic regression of presence,absence data, in understanding the distribution of commensal rodents in relation to dwellings, with the prospect of more effective management practices being developed as a consequence. [source] A probability-based analysis of temporal and spatial co-occurrence in grassland birdsJOURNAL OF BIOGEOGRAPHY, Issue 12 2006Joseph A. Veech Abstract Aim, To test for non-random co-occurrence in 36 species of grassland birds using a new metric and the C -score. The analysis used presence,absence data of birds distributed among 305 sites (or landscapes) over a period of 35 years. This analysis departs from traditional analyses of species co-occurrence in its use of temporal data and of individual species' probabilities of occurrence to derive analytically the expected co-occurrence between paired species. Location, Great Plains region, USA. Methods, Presence,absence data for the bird species were obtained from the North American Breeding Bird Survey. The analysis was restricted to species pairs whose geographic ranges overlapped. Each of 541 species pairs was classified as a positive, negative, or non-significant association depending on the mean difference between the observed and expected frequencies of co-occurrence over the 35-year time-span. Results, Of the 541 species pairs that were examined, 202 to 293 (37,54%) were positively associated, depending on which of two null models was used. However, only a few species pairs (<5%) were negatively associated. An additional 89 species pairs did not have overlapping ranges and hence represented de facto negative associations. The results from analyses based on C -scores generally agreed with the analyses based on the difference between observed and expected co-occurrence, although the latter analyses were slightly more powerful. Main conclusions, Grassland birds within the Great Plains region are primarily distributed among landscapes either independently or in conjunction with one another. Only a few species pairs exhibited repulsed or segregated distributions. This indicates that the shared preference for grassland habitat may be more important in producing coexistence than are negative species interactions in preventing it. The large number of non-significant associations may represent random associations and thereby indicate that the presence/absence of other grassland bird species may have little effect on whether a given focal species is also found within the landscape. In a broader context, the probability-based approach used in this study may be useful in future studies of species co-occurrence. [source] Spatial patterns in species,area relationships and species distribution in a West African forest,savanna mosaicJOURNAL OF BIOGEOGRAPHY, Issue 4 2005Thomas Hovestadt Abstract Aim, To investigate the relationship between the slope z of the species,area relationship (SAR) and the intensity of spatial patterns in species number and dissimilarity for woody plants with different modes of seed dispersal. According to island theory we expect, for any given archipelago, steeper slopes and more pronounced spatial patterns for groups of less dispersive species. Location, Ivory Coast, West Africa. Methods, In a West African forest,savanna mosaic we collected presence,absence data for woody plant species in 49 forest islands. The parameters of the SARs were fitted by nonlinear regressions and then compared for plant species aggregated according to their mode of seed dispersal. We used the Mantel test to calculate the intensity of spatial patterns in species number, i.e. residual deviation from SAR, and species dissimilarity. Results, The z -value for bird-dispersed species was lower (0.11) than that for wind-dispersed species (0.27), with mammal-dispersed species taking an intermediate value (0.16). This result suggests that, as a group, bird-dispersed species are better colonizers. The spatial pattern in species number as well as species similarity was more pronounced for bird- compared with wind-dispersed species. Main conclusions, The standard interpretation of the theory of island biogeography claims that shallow slopes in the SAR imply low isolation of islands, i.e. good dispersal abilities of species. The results of our study appear to contradict this statement. The contradiction can eventually be resolved by a more detailed account of the colonization process, i.e. by distinguishing between dispersal and consecutive establishment of populations. [source] MPowering ecologists: community assembly tools for community assembly rulesOIKOS, Issue 7 2010Joshua Ladau Null model tests of presence,absence data (,NMTPAs') provide important tools for inferring effects of competition, facilitation, habitat filtering, and other ecological processes from observational data. Many NMTPAs have been developed, but they often yield conflicting conclusions when applied to the same data. Type I and II error rates, size, power, robustness and bias provide important criteria for assessing which tests are valid, but these criteria need to be evaluated contingent on the sample size, null hypothesis of interest, and assumptions that are appropriate for the data set that is being analyzed. In this paper, we confirm that this is the case using the software MPower, evaluating the validity of NMTPAs contingent on the null hypothesis being tested, assumptions that can be made, and sample size. Evaluating the validity of NMTPAs contingent on these factors is important towards ensuring that reliable inferences are drawn from observational data about the processes controlling community assembly. [source] Improving the assessment of species compositional dissimilarity in a priori ecological classifications: evaluating map scale, sampling intensity and improvement in a hierarchical classificationAPPLIED VEGETATION SCIENCE, Issue 4 2010B.E. Lawson Abstract Question: Can species compositional dissimilarity analyses be used to assess and improve the representation of biodiversity patterns in a priori ecological classifications? Location: The case study examined the northern-half of the South-east Queensland Bioregion, eastern Australia. Methods: Site-based floristic presence,absence data were used to construct species dissimilarity matrices (Kulczynski metric) for three levels of Queensland's bioregional hierarchy , subregions (1:500 000 scale), land zones (1:250 000 scale) and regional ecosystems (1:100 000 scale). Within- and between-class dissimilarities were compiled for each level to elucidate species compositional patterns. Randomized subsampling was used to determine the minimum site sampling intensity for each hierarchy level, and the effects of lumping and splitting illustrated for several classes. Results: Consistent dissimilarity estimates were obtained with five or more sites per regional ecosystem, 10 or more sites per land zone, and more than 15 sites per subregion. On average, subregions represented 4% dissimilarity in floristic composition, land zones approximately 10%, and regional ecosystems over 19%. Splitting classes with a low dissimilarity increased dissimilarity levels closer to average, while merging ecologically similar classes with high dissimilarities reduced dissimilarity levels closer to average levels. Conclusions: This approach demonstrates a robust and repeatable means of analysing species compositional dissimilarity, determining site sampling requirements for classifications and guiding decisions about ,lumping' or ,splitting' of classes. This will allow more informed decisions on selecting and improving classifications and map scales in an ecologically and statistically robust manner. [source] Danger,early maladaptive schemas at work!: the role of early maladaptive schemas in career choice and the development of occupational stress in health workersCLINICAL PSYCHOLOGY AND PSYCHOTHERAPY (AN INTERNATIONAL JOURNAL OF THEORY & PRACTICE), Issue 2 2008Martin Bamber The schema-focused model of occupational stress and work dysfunctions (Bamber & Price, 2006; Bamber, 2006) hypothesizes that individuals with EMS (unconsciously) gravitate toward occupations with similar dynamics and structures to the toxic early environments and relationships that created them. They subsequently re-enact these EMS and their associated maladaptive coping styles in the workplace. For most individuals, this results in ,schema healing', but for some individuals with more rigid and severe EMS, schema healing is not achieved and the structures and relationships of the workplace, together with the utilization of maladaptive coping styles, serve to perpetuate their EMS. The model hypothesizes that it is these individuals who are most vulnerable to developing occupational stress syndromes To date, this model has been subjected to very little empirical investigation, so the main aim of this study was to address this gap in the literature by testing out some of its main assumptions and to provide empirical data, which would either support or reject the model using a population of health workers. Specifically, it was hypothesized that ,occupation-specific' EMS would be found in health workers from a range of different healthcare professions. It was also hypothesized that the presence of higher levels of EMS would be predictive of raised levels of occupational stress, psychiatric caseness and increased sickness absence in those individuals. A cross-sectional study design was employed and a total of 249 staff working within a NHS Trust, belonging to one of five occupational groups (medical doctors, nurses, clinical psychologists, IT staff and managers), participated in the study. All participants completed the Young Schema Questionnaire-Short Form (Young, 1998); the Maslach Burnout Inventory-Human Services Form (Maslach & Jackson, 1981), and the General Health Questionnaire-28-item version (Goldberg, 1978). A demographic questionnaire and sickness absence data was also collected. The results of a between groups analysis of variance and further post hoc statistical analyses identified a number of occupation specific EMS. Also, the results of a series of multiple linear regression analyses indicated the presence of some EMS to be predictive of higher levels of burnout, psychiatric caseness and sickness absence in health workers. In conclusion, the findings of this study provide empirical support for the schema-focused model of occupational stress and work dysfunctions (Bamber & Price, 2006; Bamber, 2006), and it appears that the existence of underlying EMS may constitute a predisposing vulnerability factor to developing occupational stress.,Copyright © 2008 John Wiley & Sons, Ltd. [source] Conservation Strategies for Endemic Fish Species Threatened by the Three Gorges DamCONSERVATION BIOLOGY, Issue 6 2003YOUNG-SEUK PARK diseño de reserva; especies endémicas; modelo de comunidad; peces; presa Three Gorges Abstract: The largest damming project to date, the Three Gorges Dam has been built along the Yangtze River (China), the most species-rich river in the Palearctic region. Among 162 species of fish inhabiting the main channel of the upper Yangtze, 44 are endemic and are therefore under serious threat of global extinction from the dam. Accordingly, it is urgently necessary to develop strategies to minimize the impacts of the drastic environmental changes associated with the dam. We sought to identify potential reserves for the endemic species among the 17 tributaries in the upper Yangtze, based on presence/absence data for the 44 endemic species. Potential reserves for the endemic species were identified by characterizing the distribution patterns of endemic species with an adaptive learning algorithm called a "self-organizing map" (SOM). Using this method, we also predicted occurrence probabilities of species in potential reserves based on the distribution patterns of communities. Considering both SOM model results and actual knowledge of the biology of the considered species, our results suggested that 24 species may survive in the tributaries, 14 have an uncertain future, and 6 have a high probability of becoming extinct after dam filling. Resumen: El proyecto de represa más grande a la fecha, la Presa Three Gorges fue construida en el Río Yangtze (China), el río con mayor riqueza de especies en la región Paleártica. Entre las 162 especies de peces que habitan el canal principal del alto Yangtze, 44 son endémicas y por tanto están seriamente amenazadas de extinción global por la presa. Consecuentemente, es urgente desarrollar estrategias para minimizar los impactos de los cambios ambientales drásticos asociados con la presa. Tratamos de identificar las reservas potenciales para las especies endémicas entre los 17 afluentes en el alto Yangtze, en base a datos de presencia y ausencia de las 44 especies endémicas. Se identificaron las reservas potenciales para la especies endémicas caracterizando los patrones de distribución de especies endémicas con un algoritmo de aprendizaje adaptivo denominado "mapa auto-organizante" (MAO). Con este método, también predijimos las probabilidades de ocurrencia de especies en reservas potenciales en base a los patrones de distribución de las comunidades. Tomando en cuenta tanto los resultados del modelo MAO como el conocimiento actual de la biología de especies en consideración, nuestros resultados sugieren que 24 especies pueden sobrevivir en los afluentes, 14 tienen un futuro incierto y 6 tienen una alta probabilidad de extinguirse después del llenado de la presa. [source] Modelling chorotypes of invasive vertebrates in mainland SpainDIVERSITY AND DISTRIBUTIONS, Issue 2 2008Raimundo Real ABSTRACT We investigated the existence of chorotypes , assemblages of species with similar geographical ranges , of invasive species in a host territory, and their potential use to advocate similar control or management strategies for species in the same chorotype. We analysed the distribution of 13 exotic terrestrial vertebrate species (six birds, six mammals, and one reptile) with well-known distributions in mainland Spain. We used the presence/absence data on a grid of 10 km × 10 km UTM cells from the Atlases of terrestrial vertebrates of Spain. These data were aggregated to a grid of 50 km × 50 km UTM cells, because it entailed no loss of meaningful information and allowed dealing with a much lower number of cells. Using cluster analysis and a probabilistic assessment of the classification, we identified seven significant chorotypes: four multispecific and three monospecific. The compound chorotypes grouped together species that tended to share certain characteristics about their introduction, release cause, establishment, and spread. We modelled the chorotypes using a favourability function based on a generalized linear model and 31 variables related to spatial situation, topography, lithology, climatic stability, energy availability, water availability, disturbances, productivity, and human activity. Climatic factors affected the favourability for every chorotype, whereas human variables had a high influence in the distribution of three chorotypes involving eight species. On the basis of these variables, we identified favourable areas for all the chorotypes in mainland Spain. The favourability for a chorotype in an area may be a useful criterion for evaluating the local conservation concern due to the whole set of species. Favourable but unoccupied areas can be used to infer possible colonization areas for each chorotype. We recommend using chorotypes to optimize broad-scale surveillance of invasive species. [source] NeuralEnsembles: a neural network based ensemble forecasting program for habitat and bioclimatic suitability analysisECOGRAPHY, Issue 1 2009Jesse R. O'Hanley NeuralEnsembles is an integrated modeling and assessment tool for predicting areas of species habitat/bioclimatic suitability based on presence/absence data. This free, Windows based program, which comes with a friendly graphical user interface, generates predictions using ensembles of artificial neural networks. Models can quickly and easily be produced for multiple species and subsequently be extrapolated either to new regions or under different future climate scenarios. An array of options is provided for optimizing the construction and training of ensemble models. Main outputs of the program include text files of suitability predictions, maps and various statistical measures of model performance and accuracy. [source] Methods to account for spatial autocorrelation in the analysis of species distributional data: a reviewECOGRAPHY, Issue 5 2007Carsten F. Dormann Species distributional or trait data based on range map (extent-of-occurrence) or atlas survey data often display spatial autocorrelation, i.e. locations close to each other exhibit more similar values than those further apart. If this pattern remains present in the residuals of a statistical model based on such data, one of the key assumptions of standard statistical analyses, that residuals are independent and identically distributed (i.i.d), is violated. The violation of the assumption of i.i.d. residuals may bias parameter estimates and can increase type I error rates (falsely rejecting the null hypothesis of no effect). While this is increasingly recognised by researchers analysing species distribution data, there is, to our knowledge, no comprehensive overview of the many available spatial statistical methods to take spatial autocorrelation into account in tests of statistical significance. Here, we describe six different statistical approaches to infer correlates of species' distributions, for both presence/absence (binary response) and species abundance data (poisson or normally distributed response), while accounting for spatial autocorrelation in model residuals: autocovariate regression; spatial eigenvector mapping; generalised least squares; (conditional and simultaneous) autoregressive models and generalised estimating equations. A comprehensive comparison of the relative merits of these methods is beyond the scope of this paper. To demonstrate each method's implementation, however, we undertook preliminary tests based on simulated data. These preliminary tests verified that most of the spatial modeling techniques we examined showed good type I error control and precise parameter estimates, at least when confronted with simplistic simulated data containing spatial autocorrelation in the errors. However, we found that for presence/absence data the results and conclusions were very variable between the different methods. This is likely due to the low information content of binary maps. Also, in contrast with previous studies, we found that autocovariate methods consistently underestimated the effects of environmental controls of species distributions. Given their widespread use, in particular for the modelling of species presence/absence data (e.g. climate envelope models), we argue that this warrants further study and caution in their use. To aid other ecologists in making use of the methods described, code to implement them in freely available software is provided in an electronic appendix. [source] Seasonal and substrate preferences of fungi colonizing leaves in streams: traditional versus molecular evidenceENVIRONMENTAL MICROBIOLOGY, Issue 2 2005Liliya G. Nikolcheva Summary Aquatic hyphomycetes are the main fungal decomposers of plant litter in streams. We compared the importance of substrate (three leaf species, wood) and season on fungal colonization. Substrates were exposed for 12 4-week periods. After recovery, mass loss, fungal biomass and release of conidia by aquatic hyphomycetes were measured. Fungal communities were characterized by counting and identifying released conidia and by extracting and amplifying fungal DNA (ITS2), which was subdivided into phylotypes by denaturing gradient gel electrophoresis (DGGE) and terminal-restriction fragment length polymorphism (T-RFLP). Mass loss, fungal biomass and reproduction were positively correlated with stream temperature. Conidial diversity was highest between May and September. Numbers of different phylotypes were more stable. Principal coordinate analyses (PCO) and canonical analyses of principal coordinates (CAP) of presence/absence data (DGGE bands, T-RFLP peaks and conidial species) showed a clear seasonal trend (P, 0.002) but no substrate effect (P, 0.88). Season was also a significant factor when proportional similarities of conidial communities or relative intensities of DGGE bands were evaluated (P, 0.003). Substrate was a significant factor determining DGGE band intensities (P = 0.002), but did not significantly affect conidial communities (P = 0.50). Both traditional and molecular techniques suggest that strict exclusion of fungi by substrate type is rare, and that presence of different species or phylotypes is governed by season. Biomasses of the various taxa (based on DGGE band intensities) were related to substrate type. [source] Dynamics of yeast populations recovered from decaying leaves in a nonpolluted stream: a 2-year study on the effects of leaf litter type and decomposition timeFEMS YEAST RESEARCH, Issue 4 2007Ana Sampaio Abstract Here we report on the results of a survey of the yeast populations occurring on submerged leaves (alder, eucalyptus and oak) in a natural mountain stream, during different phases of their decomposition and through two consecutive years. Leaf litter mass loss, total yeast counts, Shannon,Weiner index (H,), yeast community structure and physiologic abilities were analyzed to evaluate the dynamics of yeast communities during decay. Seventy-two yeast taxa were recorded, and in all litter types, species of basidiomycetous affinity predominated over ascomycetous ones. Discriminant analysis of presence/absence data (yeast species) showed significant differences both among substrate types (P<0.0026) and with decomposition time (P<0.0001). Carbon and nitrogen source utilization by yeast strains also varied with the substrate (P<0.0001) and decomposition time (P<0.0001). Further conclusions were that: (1) all litter types have in common ubiquitous yeast species, such as Cryptococcus albidus, Debaryomyces hansenii and Rhodotorula glutinis, among the common 20 yeast species; (2) only a few species were dominant, and most species were rare, being recorded once or twice throughout decomposition; and (3) the order of yeast appearance, and their substrate assimilation patterns, strongly suggest a succession phenomenon. Finally, explanations for the distribution patterns and variations in yeast communities are discussed. [source] Contribution of native and non-native species to fish communities in French reservoirsFISHERIES MANAGEMENT & ECOLOGY, Issue 3-4 2004P. Irz Abstract Previous studies showed that only 20% of the variability in fish community structure in French reservoirs could be explained by site characteristics. In addition, no relationship was found between the relative abundance of species and stocking effort. Therefore, deliberate or uncontrolled introductions are likely to be the source of a great part of the observed communities. The objective of this study was to assess the importance of species introductions in French reservoirs. Fifty-one reservoirs were sampled to obtain species presence/absence data. Local native (LNaR) and non-native (LNNR) species richness were negatively correlated. LNaR was strongly correlated to the lake surface area, depth and catchment area, whereas LNNR was independent of environmental variables. Furthermore, LNaR was positively correlated to regional native richness. Conversely, local total richness was independent of regional total richness, but was related to the reservoirs' environmental characteristics. It was hypothesised that the native fish communities in French reservoirs are unsaturated and species introductions lead to saturated communities. [source] Assembly rules and functional groups at global biogeographical scalesFUNCTIONAL ECOLOGY, Issue 5 2002D. R. Bellwood Summary 1The taxonomic and functional composition of reef fish assemblages are quantified in three biogeographical regions: Great Barrier Reef, French Polynesia and Caribbean. Assemblages are described in three habitats of differing wave exposure. Functional abilities are estimated based on published analyses linking fin morphology and swimming performance. 2Two questions were addressed: (1) To what extent are labrid assemblages similar among habitats and regions? (2) To what extent are functional characteristics of fish assemblages shaped by differences in biodiversity, evolutionary history and species composition? 3All three regions display highly congruent patterns of habitat use, in terms of assemblage structure and functional characteristics, despite a five-fold difference in species richness, limited or no species overlap, and a 3·2-Myear history of isolation. Exposed reef crest assemblages were dominated by fishes with fins reflecting lift-based high-speed locomotion. In contrast to abundance-based patterns, species presence/absence data were uninformative. 4The relationship between swimming ability and habitat use reveals underlying assembly rules at a functional level, emphasizing the utility of functional attributes as a metric for comparing system-level properties in taxonomically distinct faunas. [source] Patterns in marine hydrozoan richness and biogeography around southern Africa: implications of life cycle strategyJOURNAL OF BIOGEOGRAPHY, Issue 4 2010Mark J. Gibbons Abstract Aim, To examine patterns of marine hydrozoan richness around southern Africa and to test the hypothesis that patterns of biogeography become weaker with increasing dispersal ability. Location, The coastline of southern Africa from 21° S, 14° E to 28° S, 33° E, extending from the intertidal zone seawards a distance of 200 nautical miles. Methods, Published and unpublished information on the distribution of marine Hydrozoa was entered as presence/absence data onto a gridded coastline of the region. A similarity matrix between the species composition of grid squares was constructed using the Bray,Curtis index and visualized using non-metric multidimensional scaling ordinations. Separate analyses were conducted, and compared, on the three major life cycle groupings: holoplanktic, meroplanktic and benthic. Results, Over 450 species of marine Hydrozoa have been reported from the region, and species richness increases eastwards, in a manner at odds with the distribution of sampling effort. There was a significant correlation between the geographic structures of the resemblance matrices generated for the three life cycle groupings. In other words, all three groups showed similar patterns of biogeography around the region, and these were broadly similar to those reported by others. However, there were differences between them that reflect the resolution at which the data were examined. At a level of 40% similarity, there was no biogeographic structure to the holoplanktic fauna, the meroplanktic taxa were simply sub-divided into cool- and warm-temperate/subtropical elements, and in the case of benthic taxa, the cool-water fauna was further split into a southern Namaqua and a depauperate northern Namib component. Even at a resolution of 70% similarity, the holopelagic taxa could be separated only into cool-temperate and warm-temperate/subtropical faunas. Main conclusions, Holoplanktic taxa show comparatively less biogeographic structure than meroplanktic taxa, which in turn show less clearly defined biogeographic structure than benthic taxa. It is suggested that this is related to the interaction between oceanography and dispersive-stage duration. The role that the Agulhas Current plays in influencing the Benguela Current fauna is highlighted. This study has implications for conservation planning exercises based on protecting representative biotopes in different biogeographic regions. [source] Fish assemblages of the Casiquiare River, a corridor and zoogeographical filter for dispersal between the Orinoco and Amazon basinsJOURNAL OF BIOGEOGRAPHY, Issue 9 2008Kirk O. Winemiller Abstract Aim, The aim of this study was to determine whether the Casiquiare River functions as a free dispersal corridor or as a partial barrier (i.e. filter) for the interchange of fish species of the Orinoco and Negro/Amazon basins using species assemblage patterns according to geographical location and environmental features. Location, The Casiquiare, Upper Orinoco and Upper Negro rivers in southern Venezuela, South America. Methods, Our study was based on an analysis of species presence/absence data and environmental information (11 habitat characteristics) collected by the authors and colleagues between the years 1984 and 1999. The data set consisted of 269 sampled sites and 452 fish species (> 50,000 specimens). A wide range of habitat types was included in the samples, and the collection sites were located at various points along the entire length of the Casiquiare main channel, at multiple sites on its tributary streams, as well as at various nearby sites outside the Casiquiare drainage, within the Upper Orinoco and Upper Rio Negro river systems. Most specimens and field data used in this analysis are archived in the Museo de Ciencias Naturales in Guanare, Venezuela. We performed canonical correspondence analysis (CCA) based on species presence/absence using two versions of the data set: one that eliminated sites having < 5 species and species occurring at < 5 sites; and another that eliminated sites having < 10 species and species occurring at < 10 sites. Cluster analysis was performed on sites based on species assemblage similarity, and a separate analysis was performed on species based on CCA loadings. Results, The CCA results for the two versions of the data set were qualitatively the same. The dominant environmental axis contrasted assemblages and sites associated with blackwater vs. clearwater conditions. Longitudinal position on the Casiquiare River was correlated (r2 = 0.33) with CCA axis-1 scores, reflecting clearwater conditions nearer to its origin (bifurcation of the Orinoco) and blackwater conditions nearer to its mouth (junction with the Rio Negro). The second CCA axis was most strongly associated with habitat size and structural complexity. Species associations derived from the unweighted pair-group average clustering method and pair-wise squared Euclidean distances calculated from species loadings on CCA axes 1 and 2 showed seven ecological groupings. Cluster analysis of species assemblages according to watershed revealed a stronger influence of local environmental conditions than of geographical proximity. Main conclusions, Fish assemblage composition is more consistently associated with local environmental conditions than with geographical position within the river drainages. Nonetheless, the results support the hypothesis that the mainstem Casiquiare represents a hydrochemical gradient between clearwaters at its origin and blackwaters at its mouth, and as such appears to function as a semi-permeable barrier (environmental filter) to dispersal and faunal exchanges between the partially vicariant fish faunas of the Upper Orinoco and Upper Negro rivers. [source] The tripartite biogeographical index: a new tool for quantifying spatio-temporal differences in distribution patternsJOURNAL OF BIOGEOGRAPHY, Issue 4 2006Tom Schils Abstract Aims, First, to develop an index that quantifies biogeographical patterns based on the basic descriptors of presence/absence distribution patterns (F, frequency; C, connectivity; G, grouping). Second, to test the proposed biogeographical index on a data set of macrophyte communities in the Arabian Sea using distribution data of macro-algae and seagrasses throughout the Indian Ocean. Location, Arabian Sea (regional macrophyte community data) and the larger Indian Ocean (oceanic distribution data). Methods, The proposed index is derived from the Tulloss tripartite similarity index. The tripartite biogeographical index (TBI = ,F × C × G) is calculated for a specific taxon and incorporates several fundamental parameters of presence/absence data in grid cell (block) patterns. TBI accounts for the relative abundance of a taxon, the average grouping of its occurrences, the average of minimal absence intervals between taxon presences and the largest coherent cluster of taxon occurrences, and also incorporates dispersal aspects. The macrophytes from the case study are among the best documented marine organisms in the Indian Ocean. The regional distribution data from the Arabian Sea result from exhaustive species lists from Masirah Island (Oman) and the Socotra Archipelago (Yemen). Results, TBI values fit a linear scale corresponding to the proportional presence and the distributional spread of taxa within a given geographical area. The three functions that constitute TBI can be evaluated separately or in association with TBI, to give detailed information on the important factors that characterize the biogeographical distribution of a taxon (or larger entities consisting of multiple taxa such as communities). The case study on Arabian macrophytes clarifies the use and explanatory power of the index. Main conclusions, The biogeographical descriptors can be combined into an index which accurately quantifies taxon occurrences and distribution types on a single linear scale from rare/scattered to abundant/grouped. Together with its three functions, the index allows for a non-arbitrary selection of taxa and taxon groupings based on their distribution pattern. The analysis of TBI values for the Arabian macrophyte communities confirms previous biogeographical findings and enables more detailed statistical analyses of the distribution data. [source] Spatial congruence of ecological transition at the regional scale in South AfricaJOURNAL OF BIOGEOGRAPHY, Issue 5 2004Berndt J. Van Rensburg Abstract Aim, To determine whether patterns of avian species turnover reflect either biome or climate transitions at a regional scale, and whether anthropogenic landscape transformation affects those patterns. Location South Africa and Lesotho. Methods, Biome and land transformation data were used to identify sets of transition areas, and avian species occurrence data were used to measure species turnover rates (, -diversity). Spatial congruence between areas of biome transition, areas of high vegetation heterogeneity, high climatic heterogeneity, and high , -diversity was assessed using random draw techniques. Spatial overlap in anthropogenically transformed areas, areas of high climatic heterogeneity and high , -diversity areas was also assessed. Results, Biome transition areas had greater vegetation heterogeneity, climatic heterogeneity, and , -diversity than expected by chance. For the land transformation transition areas, this was only true for land transformation heterogeneity values and for one of the , -diversity measures. Avian presence/absence data clearly separated the biome types but not the land transformation types. Main conclusions, Biome edges have elevated climatic and vegetation heterogeneity. More importantly, elevated , -diversity in the avifauna is clearly reflected in the heterogeneous biome transition areas. Thus, there is spatial congruence in biome transition areas (identified on vegetation and climatic grounds) and avian turnover patterns. However, there is no congruence between avian turnover and land transformation transition areas. This suggests that biogeographical patterns can be recovered using modern data despite landscape transformation. [source] Sensitivity of different taxonomic levels of soil Gamasina to land use and anthropogenic disturbancesAGRICULTURAL AND FOREST ENTOMOLOGY, Issue 2 2010José Camilo Bedano 1The effect of taxonomic level on the sensitivity of bioindicators has been widely investigated in aquatic ecosystems and, to a lesser extent, in terrestrial ecosystems. However, no studies have been conducted on the sensitivity of the different taxonomic levels of soil mites, especially Gamasina, to human activities. 2The present study aimed to assess the sensitivity of different taxonomic levels of soil Gamasina mites to anthropogenic disturbances in Europe and Argentina. We arranged the data from previous projects in a hierarchical system and conducted a study to identify the critical taxonomical levels that had the highest discriminative potential between sites (Europe and Argentina) or management types (forests, grasslands, fallows, succession, recultivation and agricultural sites). 3For the Gamasina community, geographical location was by far more important than the influence of any land use type. The analysis including only the European sites demonstrated that communities belonging to sites subjected to different land uses were also significantly different. 4The species data set provided a clearer separation of sites according to both the geographical and the land-use gradients than the genus and family data sets. The genus and, to a lesser extent, the family approach may be sufficient to elucidate the influence of great geographical differences and also of certain land uses (e.g. grasslands from the forests and arable sites). 5Species presence/absence data provided valuable information in our analyses, although the use of quantitative data yielded a clearer separation of sites. [source] Statistical determination of diagnostic species for site groups of unequal sizeJOURNAL OF VEGETATION SCIENCE, Issue 6 2006Lubomír Tichy Abstract Aim: Concentration of species occurrences in groups of classified sites can be quantified with statistical measures of fidelity, which can be used for the determination of diagnostic species. However, for most available measures fidelity depends on the number of sites within individual groups. As the classified data sets typically contain site groups of unequal size, such measures do not enable a comparison of numerical fidelity values of species between different site groups. We therefore propose a new method of measuring fidelity with presence/absence data after equalization of the size of the site groups. We compare the properties of this new method with other measures of statistical fidelity, in particular with the Dufrêne-Legendre Indicator Value (IndVal) index. Methods: The size of site groups in the data set is equalized, while relative frequencies of species occurrence within and outside of these groups are kept constant. Then fidelity is calculated using the phi coefficient of association. Results: Fidelity values after equalization are independent of site group size, but their numerical values vary independently of the statistical significance of fidelity. By changing the size of the target site group relative to the size of the entire data set, the fidelity measure can be made more sensitive to either common or rare species. We show that there are two modifications of the IndVal index for presence/absence data, one of which is also independent of the size of site groups. Conclusion: The phi coefficient applied to site groups of equalized size has advantages over other statistical measures of fidelity based on presence/absence data. Its properties are close to an intuitive understanding of fidelity and diagnostic species in vegetation science. Statistical significance can be checked by calculation of another fidelity measure that is a function of statistical significance, or by direct calculation of the probability of observed species concentrations by Fisher's exact test. An advantage of the new method over IndVal is its ability to distinguish between positive and negative fidelity. One can also weight the relative importance of common and rare species by changing the equalized size of the site groups. [source] | ||||||||||||||||||||||||||||