Abundance Values (abundance + value)

Distribution by Scientific Domains
Life Sciences50%

Selected Abstracts

Spatial variation in population density across the geographical range in helminth parasites of yellow perch Perca flavescens

ECOGRAPHY, Issue 5 2007
Robert Poulin
The abundance of a species is not constant across its geographical range; it has often been assumed to decrease from the centre of a species' range toward its margins. The central assumption of this "favourable centre" model is tested for the first time with parasites, using different species of helminth parasites exploiting fish as definitive hosts. Data on prevalence (percentage of hosts that are infected) and abundance (mean no. parasites per host) were compiled for 8 helminth species occurring in 23 populations of yellow perch Perca flavescens, from continental North America. For each parasite species, correlations were computed between latitude and both local prevalence and abundance values. In addition, the relationships between the relative prevalence or abundance in one locality and the distance between that locality and the one where the maximum value was reported, were assessed separately for each species to determine whether abundance tends to decrease away from the presumed centre of the range, where it peaks. For both the cestode Proteocephalus pearsei and the acanthocephalan Leptorhynchoides thecatus, there was a positive relationship between prevalence or abundance and the latitude of the sampled population. There was also a significant negative relationship between relative prevalence and the distance from the locality showing the maximum value in P. pearsei, but no such pattern was observed for the other 7 parasite species. Since this single significant decrease in prevalence with increasing distance from the peak value may be confounded by a latitudinal gradient, it appears that the distribution of abundance in parasites of perch does not follow the favourable centre model. This means that the environmental variables affecting the density of parasites (host availability, abiotic conditions) do not show pronounced spatial autocorrelation, with nearby sites not necessarily providing more similar conditions for the growth of parasite populations than distant sites. [source]

MapQuant: Open-source software for large-scale protein quantification

PROTEINS: STRUCTURE, FUNCTION AND BIOINFORMATICS, Issue 6 2006
Kyriacos C. Leptos
Abstract Whole-cell protein quantification using MS has proven to be a challenging task. Detection efficiency varies significantly from peptide to peptide, molecular identities are not evident a,priori, and peptides are dispersed unevenly throughout the multidimensional data space. To overcome these challenges we developed an open-source software package, MapQuant, to quantify comprehensively organic species detected in large MS datasets. MapQuant treats an LC/MS experiment as an image and utilizes standard image processing techniques to perform noise filtering, watershed segmentation, peak finding, peak fitting, peak clustering, charge-state determination and carbon-content estimation. MapQuant reports abundance values that respond linearly with the amount of sample analyzed on both low- and high-resolution instruments (over a 1000-fold dynamic range). Background noise added to a sample, either as a medium-complexity peptide mixture or as a high-complexity trypsinized proteome, exerts negligible effects on the abundance values reported by MapQuant and with coefficients of variance comparable to other methods. Finally, MapQuant's ability to define accurate mass and retention time features of isotopic clusters on a high-resolution mass spectrometer can increase protein sequence coverage by assigning sequence identities to observed isotopic clusters without corresponding MS/MS data. [source]

Short-term environmental changes in Lake Morenito (41°S, 71°W, Patagonia, Argentina) from the analysis of sub-fossil chironomids

AQUATIC CONSERVATION: MARINE AND FRESHWATER ECOSYSTEMS, Issue 1 2005
Julieta Massaferro
Abstract 1.A short sediment core from Lake Morenito was studied to assess the impact of environmental changes on chironomid communities occurring during the last ca 100 yr. 2.Lake Morenito (41°S, 71°W) is located 20 km west of the city of Bariloche, in northern Patagonia, Argentina. Before 1960, this lake was a branch of Lake Moreno; by that time, an artificial dam closed the system, establishing the new lake. Another human disturbance that took place during the time span of the core was the introduction of salmonids to the area ca 1910. 3.The most important natural events that occurred in the area during the last 100 yr were related to volcanic episodes. One of them, occured in Chile in 1960 affecting the Argentinian side, coincided with the dam's construction. 4.Changes in the chironomid community were recorded by studying the sub-fossil remains (the chitinized head capsule of the larvae) present in the sedimentary sequence. The results show that volcanic tephra layers deposited along the core led to a sharp instantaneous drop in the diversity and abundance of chironomid assemblages. Human activities are also associated with a change in chironomid community composition. 5.Chironomus reached its maximum abundance values in 1910 and 1960. The organic matter content also increased at the same time. The increase of Chironomus after 1910 is clearly related to an increase in the trophic status of the lake. However, owing to the synchronicity of events in 1960, i.e. the volcanic event and the dam's construction, it is difficult to establish whether the change in the chironomid assemblage was in response to an increase in trophic enrichment, to natural disturbance, or both. Copyright © 2004 John Wiley & Sons, Ltd. [source]