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Branching Lineage (branching + lineage)
Selected AbstractsPHYLOGENETIC RELATIONSHIP OF COLEOCHAETE AND CHAETO-SPHAERIDIUM (COLEOCHAETALES) BASED ON THE CHLOROPLAST GENES RBCL AND ATPBJOURNAL OF PHYCOLOGY, Issue 2000Cimino M. T. The freshwater green algal genera Coleochaete and Chaetosphaeridium form the order Coleochaetales sensu Mattox and Stewart (Charophyceae). To test the monophyly of this order, a data set was compiled consisting of the chloroplast genes rbcL and atpB from nine species of Coleochaete, six strains of Chaetosphaeridium, and other representative green algae and embryophytes. Phylogenetic analyses of these data indicate that Coleochaete and Chaetosphaeridium form a monophyletic group that diverged late in basal streptophyte evolution. By contrast, published analyses of nuclear encoded small subunit ribosomal DNA (rDNA) data for similar taxa do not support a monophyletic Coleochaetales. These analyses suggest Chaetosphaeridium is an early branching lineage within Streptophyta and/or that Chaetosphaeridium forms a lineage with the unicellular flagellate Mesostigma (Mesostigmatophyceae). A close relationship of Chaetosphaeridium and Mesostigma is not supported by the rbcL and atpB data. Reexamination of morphological characters suggests a monophyletic Coleochaetales is supported by several characters that include branching filamentous habit, unicellular apical growth, sheathed hairs, and rotating plastids. [source] Ancestral roles of eukaryotic frataxin: mitochondrial frataxin function and heterologous expression of hydrogenosomal Trichomonas homologues in trypanosomesMOLECULAR MICROBIOLOGY, Issue 1 2008Shaojun Long Summary Frataxin is a small conserved mitochondrial protein; in humans, mutations affecting frataxin expression or function result in Friedreich's ataxia. Much of the current understanding of frataxin function comes from informative studies with yeast models, but considerable debates remain with regard to the primary functions of this ubiquitous protein. We exploit the tractable reverse genetics of Trypanosoma brucei in order to specifically consider the importance of frataxin in an early branching lineage. Using inducible RNAi, we show that frataxin is essential in T. brucei and that its loss results in reduced activity of the marker Fe,S cluster-containing enzyme aconitase in both the mitochondrion and cytosol. Activities of mitochondrial succinate dehydrogenase and fumarase also decreased, but the concentration of reactive oxygen species increased. Trypanosomes lacking frataxin also exhibited a low mitochondrial membrane potential and reduced oxygen consumption. Crucially, however, iron did not accumulate in frataxin-depleted mitochondria, and as T. brucei frataxin does not form large complexes, it suggests that it plays no role in iron storage. Interestingly, RNAi phenotypes were ameliorated by expression of frataxin homologues from hydrogenosomes of another divergent protist Trichomonas vaginalis. Collectively, the data suggest trypanosome frataxin functions primarily only in Fe,S cluster biogenesis and protection from reactive oxygen species. [source] Description and Phylogenetic Relationships of Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. (Amoebozoa, Arcellinida)THE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 6 2009ALEXANDER KUDRYAVTSEV ABSTRACT. Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. were isolated and described from dry epiphytic moss. The morphology and ultrastructure of both species clearly demonstrate that they belong to the genus Spumochlamys (family Microchlamyiidae). They differ from its only described member, Spumochlamys iliensis (as well as from species of Microchlamys), in the relief of the dorsal surface of the test, revealed by scanning electron microscopy, which can represent a good characteristic for species identification. They also differ in the structure of the dorsal part of the test wall (especially S. perforata). Small subunit ribosomal DNA-based molecular phylogenetic analyses show that Spumochlamys is a deeply branching lineage of the Arcellinida, without any close affinities. Actin gene sequence analysis places this genus within the Tubulinea, close to two other arcellinid lineages but without forming a monophyletic group with them. These data together strongly suggest that the lack of resolution in the arcellinid molecular phylogenies is due to serious undersampling of taxa, a limited number of sequence data, and high divergence rates in most of the species. [source] Identification of Three Distinct Polytomella Lineages Based on Mitochondrial DNA FeaturesTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 2 2006MARTIN A. MALLET ABSTRACT. Polytomella is composed of colorless green algae closely related to Chlamydomonas reinhardtii. Species in the genus have been used in diverse fields of biological research, most recently to study mitochondrial function and mitochondrial genome evolution in the Chlorophyceae, but the phylogenetic relationship between the various available taxa has not yet been clarified and it is not known whether they also possess fragmented mitochondrial genomes, as reported for Polytomella parva. We therefore examined cox1 sequence from seven Polytomella taxa with the goal of establishing their phylogenetic relationships and relating this information to their mitochondrial DNA (mtDNA) fragmentation pattern. We found that the Polytomella isolates examined fall into three distinct lineages, two of which possess fragmented mitochondrial genomes. The third and earliest branching lineage, represented by Polytomella capuana, appears to possess an intact mtDNA. In addition, there is evidence for variation in both size and number of mtDNA fragments between various Polytomella isolates, even within the same lineage. The considerable amount of sequence divergence between lineages seems to correlate with the geographic origin of the strains, leading us to believe that greater amounts of sequence divergence could be uncovered by a broader sampling of Polytomella. [source] Fossils provide better estimates of ancestral body size than do extant taxa in fishesACTA ZOOLOGICA, Issue 2009James S. Albert Abstract The use of fossils in studies of character evolution is an active area of research. Characters from fossils have been viewed as less informative or more subjective than comparable information from extant taxa. However, fossils are often the only known representatives of many higher taxa, including some of the earliest forms, and have been important in determining character polarity and filling morphological gaps. Here we evaluate the influence of fossils on the interpretation of character evolution by comparing estimates of ancestral body size in fishes (non-tetrapod craniates) from two large and previously unpublished datasets; a palaeontological dataset representing all principal clades from throughout the Phanerozoic, and a macroecological dataset for all 515 families of living (Recent) fishes. Ancestral size was estimated from phylogenetically based (i.e. parsimony) optimization methods. Ancestral size estimates obtained from analysis of extant fish families are five to eight times larger than estimates using fossil members of the same higher taxa. These disparities arise from differential survival of large-bodied members of early branching lineages, and are not statistical or taphonomic artefacts. Estimates of ancestral size obtained from a limited but judicious selection of fossil fish taxa are more accurate than estimates from a complete dataset of extant fishes. [source] | ||||||||||