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Biological Methods (biological + methods)
Kinds of Biological Methods Selected AbstractsFate and stability of 14C-labeled 2,4,6-trinitrotoluene in contaminated soil following microbial bioremediation processesENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 9 2004Martin Weiß Abstract Biological treatment of 2,4,6-trinitrotoluene (TNT) in soil rarely results in complete mineralization of the parent compound. More often, the largest proportion of the TNT carbon is incorporated into the soil organic matrix. Therefore, we evaluated the stability of nonextractable residues from various bioremediation processes of 14C-TNT in soils. The extractable amounts of the residual radioactivity varied between 7 and 33% and thus the nonextractable amount between 93 and 67% (3,15% in fulvic acids, 26,46% in humic acids, and 27,44% in the humin fraction). The residue-containing soils were analyzed for the release of radioactivity after treatment by physical (freeze and thaw, grinding of soil, and steam extraction), chemical (acid rain and addition of metal complexing agent), and biological methods (addition of compost, white rot fungi, radical-generating enzymes, and germination of plants). Freeze and thaw treatment and grinding of the soil did not alter the partitioning of the label significantly. Steam extraction and acid rain extraction increased the water extractability to 11 to 29% and to 51.6% in the native TNT-contaminated soil. The addition of ethylenediamine-tetraacetate (EDTA) increased the extractability from 7 to 12%. After biological treatment, only slightly increased extractability (<<10%) was observed. No increase of extractable TNT or known metabolites was observed with any of the treatments. Thus, under the treatment conditions applied in this study, the residues formed during microbial transformation of TNT may be biogenic residues with low mobilization potential and low hazardous impact. [source] Bioprocesses for the removal of nitrogen oxides from polluted airJOURNAL OF CHEMICAL TECHNOLOGY & BIOTECHNOLOGY, Issue 5 2005Yaomin Jin Abstract Nitrogen oxides (NOx) of environmental concern are nitrogen monoxide (NO) and nitrogen dioxide (NO2). They are hazardous air pollutants that lead to the formation of acid rain and tropospheric ozone. Both pollutants are usually present simultaneously and are, therefore, called NOx. Another compound is N2O which is found in the stratosphere where it plays a role in the greenhouse effect. Concern for environmental and health issues coupled with stringent NOx emission standards generates a need for the development of efficient low-cost NOx abatement technologies. Under such circumstances, it becomes mandatory for each NOx-emitting industry or facility to opt for proper NOx control measures. Several techniques are available to control NOx emissions: selective catalytic reduction (SCR), selective non-catalytic reduction (SNCR), adsorption, scrubbing, and biological methods. Each process offers specific advantages and limitations. Since bioprocesses present many advantages over conventional technologies for flue gas cleaning, a lot of interest has recently been shown for these processes. This article reviews the major characteristics of conventional non-biological technologies and recent advances in the biological removal of NOx from flue gases based on the catalytic activity of either eucaryotes or procaryotes, ie nitrification, denitrification, the use of microalgae, and a combined physicochemical and biological process (BioDeNOx). Relatively uncomplicated design and simple operation and maintenance requirements make biological removal a good option for the control of NOx emissions in stationary sources. Copyright © 2005 Society of Chemical Industry [source] Enhancement of biodegradability of industrial wastewaters by chemical oxidation pre-treatmentJOURNAL OF CHEMICAL TECHNOLOGY & BIOTECHNOLOGY, Issue 5 2004Dionissios Mantzavinos Abstract Chemical oxidation technologies are often employed for the treatment of complex industrial effluents that are not amenable to conventional biological methods. The role of chemical oxidation depends on the treatment objectives and may vary from partial remediation to complete mineralization. In the case of partial treatment, chemical oxidation aims at the selective removal of the more bioresistant fractions and their conversion to readily biodegradable intermediates that can subsequently be treated biologically. Coupling chemical pre-oxidation with biological post-treatment is conceptually beneficial as it can lead to increased overall treatment efficiencies compared with the efficiency of each individual stage. This paper reviews recent developments and highlights some important aspects that need to be addressed when considering such integrated schemes. Copyright © 2004 Society of Chemical Industry [source] Use of various processes for pilot plant treatment of wastewater from a wood-processing factoryJOURNAL OF CHEMICAL TECHNOLOGY & BIOTECHNOLOGY, Issue 3 2001Nikolaos S Athanasopoulos Abstract The wastewater from a wood-processing factory is characterized by a high COD, chlorides and nitrogen content. Various treatment processes were applied to treat this wastewater in pilot-scale units. By applying one-stage denitrification,activated sludge biological treatment it was not possible to remove nitrogen. Nitrification was inhibited by wastewater compounds. By applying a second stage of a nitrification biofilter it was possible to have a high degree of nitrification. The denitrification was complete. With biological methods the reduction of COD, and -N and -N concentrations to acceptable values was not achievable. Physical,Chemical methods as H2O2/UV, electrolysis and ozonation were used as post-treatment of effluents from the biological system. Radical degradation, initiated by the powerful hydroxyl radicals which are generated from H2O2 by UV activation, is used for wastewater post-treatment. The combination of H2O2/UV was not suitable for post-treatment of this wastewater. With electrolysis, -N and COD removal can be complete. The total amount of ammonia and organic nitrogen converted to nitrate nitrogen for current density of 1.15,Adm,2 and energy consumption of 71.6,kWhm,3 was 0.35,gdm,3. Further biological denitrification is required for -N removal to permitted values. Energy consumption for the elimination of 1,kg COD was 40.4,kWh and 35.8,kWh for current densities of 0.7,Adm,2 and 1.15,Adm,2 respectively. The energy required to reach the limit value of COD equal to 150,mgdm,3 for current density of 1.15,Adm,2 was 71.6,kWhm,3. With ozonation, the COD removal can be complete. Further biological nitrification,denitrification is required to remove -N and -N to permitted values. At pH 7.0, in order to reach the limit value of COD equal to 150,mgdm,3, specific ozone dose was 6.0,g per g of COD removed and the total amount of ammonia and organic nitrogen converted to nitrate nitrogen was 0.25,gdm,3. The total equivalent energy required is estimated to be 75.0,kWhm,3. © 2001 Society of Chemical Industry [source] Morphological and molecular biological studies on intramuscular Myxobolus spp. of cyprinid fishJOURNAL OF FISH DISEASES, Issue 11 2002K Molnár Abstract The validity of Myxobolus species infecting the skeletal muscles of six cyprinid fish species was studied by morphological and molecular biological methods. Intracellularly developing Myxobolus spores identified as M. cyprini from the common carp, M. musculi from the barbel, and M. pseudodispar from the roach, rudd, common bream and white bream were very similar in their shape and size. Nonetheless, in species identified as M. pseudodispar, the occurrence of spores with an asymmetrical shape was higher than in M. cyprini, while asymmetrical spores were only occasionally found in M. musculi. The DNA sequence analysis of the polymerase chain reaction (PCR)-amplified 18S rRNA gene of Myxobolus spores from these fish showed a similar phylogeny to that of their host species. As morphological studies and DNA sequence analysis demonstrated slight but real differences in the spores infecting muscles of the six cyprinid species, it is suggested that M. musculi, M. pseudodispar and M. cyprini are valid species. [source] Discovery of the hepatitis C virusLIVER INTERNATIONAL, Issue 2009Michael Houghton Abstract After nearly 6 years of intensive investigations between 1982 and 1988 in my laboratory at Chiron corporation, in which numerous molecular biological methods were used to investigate the viral aetiology of parenterally transmitted non-A, non-B viral hepatitis (NANBH), a single cDNA clone (5-1-1) was isolated that was shown to be derived from a new flavi-like virus, termed the hepatitis C virus (HCV). After screening hundreds of millions of bacterial cDNA clones derived from different liver and plasma samples obtained from experimentally infected chimpanzees, a single HCV clone was eventually isolated using a novel, blind immunoscreening method in which antibodies derived from a clinically diagnosed NANBH patient were used to identify a cDNA clone encoding an immunodominant epitope within HCV nonstructural protein 4. Its viral origin was demonstrated by its specific hybridization to a large single-stranded RNA molecule of ,10 000 nucleotides found only in NANBH-infected samples that shared distant sequence identity with flaviviruses. Further, HCV clone 5-1-1 was shown to be extrachromosomal and to encode an antigen eliciting antibody seroconversion only in NANBH-infected chimpanzees and humans. Subsequent work demonstrated that HCV was the principal cause of parenterally transmitted NANBH around the world, with an estimated 170 million global carriers and that blood screening tests detecting circulating HCV antibodies and viral RNA could effectively eradicate the transmission of transfusion-associated NANBH. Key viral-encoded enzymes essential to its life cycle are now the targets of vigorous, ongoing drug development activities, and the feasibility of successful vaccination strategies has been demonstrated using the valuable chimpanzee model, without which any progress on HCV would not have been possible. My colleagues and coworkers who made essential contributions to the discovery of HCV were George Kuo, who had his own laboratory at Chiron and who provided intellectual and practical input, Dan Bradley of the Centers for Disease Control and Prevention, who provided a large supply of well-characterized chimpanzee samples and knowledge of the NANBH field, and Qui-Lim Choo, in my own laboratory, who provided many years of outstandingly dedicated and precise molecular biology expertise. [source] Biological Natural Retting for Determining the Hierarchical Structuration of Banana FibersMACROMOLECULAR BIOSCIENCE, Issue 10 2004Piedad Gañán Abstract Summary: Extraction processes of natural fibers can be performed by different procedures that include mechanical, chemical and biological methods. Each method presents different advantages or drawbacks according to the amount of fiber produced or the quality and properties of fiber bundles obtained. In this study, biological natural retting was satisfactorily used for obtaining banana fibers from plant bunches. However, the most important contribution of this work refers to the description of the hierarchical microstructural ordering present in banana fiber bundles in both bundle surface and inner region. The chemical composition of banana fiber bundles has been evaluated by FTIR spectroscopy. Through exposure time, the fiber bundle configuration presents small variations in composition. The main changes are related to hemicellulose and pectins as they conform the outer walls of the bundle. Hierarchical helicoidal ordering in the bundle surface as well as orientation on the longitudinal axis of the bundle were observed by optical microscopy (OM) and scanning electron microscopy (SEM) for 3,4 ,m surface fibers and 10,15 ,m inner elementary fibers, respectively. With increasing exposure time, fiber bundle walls lose integrity, as reflected in their mechanical behavior. [source] Prediction of clinically insignificant prostate cancer by detection of allelic imbalance at 6q, 8p and 13qPATHOLOGY INTERNATIONAL, Issue 7 2008Masataka Nakano The criterion tumor volume (TV) for clinically insignificant prostate cancer has been reported, but it differs from study to study: some have reported TV < 200 mm3; others, < 500 mm3. The aim of the present study was to distinguish clinically insignificant cancers from significant ones using molecular biological methods. A total of 184 microscopic cancers (MC) defined as limited within a 3 mm circle and 82 main tumor (MT) nodules were selected. Thirteen microsatellite loci at 6q22, 8p23.2,23, 13q14 and 13q33 were evaluated for loss of heterozygosity (LOH). MT were subgrouped as TV , 500 mm3 or <500 mm3; TV , 200 mm3 or < 200 mm3; and TV < 200 mm3, 200 mm3 , TV < 500 mm3 or TV , 500 mm3; and frequencies of LOH were compared between these three groups. Frequencies of LOH at 6q16,21, 6q22, 8p23.1, 8p23.2, 13q14 were significantly lower in MC (1.0%, 2.7%, 1.9%, 1.1% and 5.4%) than in MT (30.9%, 40.4%, 12%, 8.7% and 20.6%), but no significant differences in LOH frequency were found within each of the three TV groups, between each cut-off. When insignificant tumor is defined as TV < 200 mm3 or < 500 mm3, it should include tumors with malignant potential equivalent to larger tumors. It is suggested that in order to identify insignificant tumor within a strict safety range, TV should be set lower. [source] Involvement of apoptosis and cholinergic dysfunction in Alzheimer's diseasePSYCHOGERIATRICS, Issue 2006Shinji TAGAMI Abstract As Alzheimer's disease (AD) progresses, brain atrophy becomes conspicuous, and histologically there is neuronal loss, primarily with a deficit of cholinergic neurons observed. Hitherto, the view has been that cell death, apoptosis, plays a role in this neuronal loss. Apoptosis is characterized by the morphological changes of nuclear fragmentation, chromatin condensation and cell shrinkage, with activation of caspases, members of the cysteine protease family, resulting in considerable substrate cleavage. TUNEL positive neurons have in fact been detected in AD brain, indicating increased caspase activity and resulting substrate cleavage. In AD brain, amyloid beta peptides (A,), the main constituent of senile plaque, are a specific pathological hallmark observed in extracellular spaces. In contrast, the main constituent of intracellularly observed neurofibrillary tangles (NFT) is hyperphosphorylated tau, which is observed in various neurodegenerative disorders other than AD. The viewpoint of many studies is that the A, and NFT that cause these neuropathological changes probably participate in neuronal death. However, up until now it has been thought that there was no hypothesis offering a comprehensive explanation of how the accumulation of extracellular A, and intracellular NFT leads to neuronal death. This report first covers the mechanism of apoptosis as clarified by molecular biological methods, and provides an explanation of how apoptosis could be involved in AD pathology. The subject of autophagic cell death, a type of cell death morphology that has recently been the focus of attention, is also addressed. [source] Application of Laser-Assisted Microdissection for Gene Expression Analysis of Mammalian Germ CellsANATOMIA, HISTOLOGIA, EMBRYOLOGIA, Issue 3 2010R. Kenngott With 1 figure and 2 tables Summary Laser-assisted microdissection (LAM) is an important method to provide new significant insights into many embryological processes. To understand these processes, it is important to obtain specific populations of cells from complex tissue in an efficient and precise manner and to combine with many different molecular biological methods. During the last few years, the sophistication of the techniques of LAM has increased significantly and made the procedure easy to use. New micro-extraction protocols for DNA, RNA and proteins now allow broad downstream applications in the fields of genomics, transcriptomics and proteomics. In this review, we give a short overview of the application of LAM in combination with quantitative qPCR for the analysis of gene expression in mammalian germ cells. [source] High frequency of false-positive signals in a real-time PCR-based "Plus/Minus" assayAPMIS, Issue 1 2009FOROUGH L. NOWROUZIAN Molecular biological methods using real-time polymerase chain reaction (RT-PCR) for detection of bacterial and viral genes in different environments have been developed into assays from different commercial sources. Applied Biosystems include and support two applications with their TaqMan instrument: the "Plus/Minus" and the "Allelic Discrimination" assays. These approaches are RT-PCR based, use short primers and fluorescent-labeled TaqMan probes and include three processes: a pre-read run, a PCR-amplification run, and a post-read run. In the "Plus/Minus" assay, samples and controls (distilled water) are loaded into the instrument, which calculates a positive or a negative outcome based on differences in signals between samples and the controls. When testing the "Plus/Minus" assay for detection of usp genes encoding a uropathogenic specific protein in Escherichia coli, an inordinately high proportion of false-positive signals was observed. This was shown to be due to a serious methodological deficiency. Our observations indicate that an adequate no-template control closely matching the target samples in all aspects, including amount of DNA, is required to establish a correct threshold in the pre-read run that forms the basis for further calculations in the post-read run of the "Plus/Minus" assay. [source] Wirkstoffe auf Basis biologisch aktiver NaturstoffeCHEMIE IN UNSERER ZEIT (CHIUZ), Issue 5 2007Jörg Heilmann Prof. Dr. Im Bereich der Wirkstoffsuche sind Naturstoffe unverzichtbar. Problematisch bei der Gewinnung von Naturstoffen sind die Beschaffung des biologischen Materials, die Auffindung und Isolierung aus einer inaktiven oder sogar die biologische Testung störenden Matrix und die Gewinnung ausreichender Mengen zur chemischen und pharmakologischen Charakterisierung bzw. für die klinische Nutzung. Oft stellen Naturstoffe ideale Leitstrukturen für die synthetische oder semisynthetische Entwicklung von Wirkstoffen dar. Besonders attraktiv sind Naturstoffe dann, wenn die biologische Quelle erneuerbar bzw. sogar in Kultur modifizierbar ist. Dies ist ein wesentlicher Aspekt für die gegenwärtige Attraktivität der Wirkstoffsuche in Mikroorganismen wie Bakterien und Pilzen. Diese können im Idealfall nicht nur in Fermentern kultiviert, sondern dort auch genetisch so verändert werden, dass neuartige Strukturen entstehen. The potential of natural products as sources for new drugs and lead structures is still largely unexplored and due to their unmatched structural diversity, secondary natural products continue to play a highly significant role in drug discovery. This article gives an overview on different strategies, chemical and biological methods as well as limiting problems for the search, screening, isolation and characterization of bioactive natural products from different sources. Ecological aspects and the importance of biodiversity and sustainable sourcing are also discussed. [source] | ||||||||||||||||