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Xenobiotic Compounds (xenobiotic + compound)
Selected AbstractsEffects of Xenobiotic Compounds on Cell Activities in Euplotes crassusTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 2 2005FRANCESCA TRIELLI It is now widely accepted that Protists are relevant bioassays to be exploited for the study of environmental modifications due to the presence of xenobiotic compounds. In this work, we evaluated the possibility of utilizing Euplotes crassus, an interstitial marine ciliate, for the pre-chemical screening of environmental sites, such as estuarine and coastal sediments. With this aim, we tested the sensitivity of E. crassus to exposure to three classes of pollutants: an organophosphate neurotoxic drug, basudin, largely used for pest control in agricultural sites, a toxic heavy metal, mercury (HgCl2), and an aromatic polycyclic hydrocarbon, benzopyrene (BP). We found a dose-dependent effect of these compounds on cell viability at concentrations ranging from 1/102 v/v to 1/107 v/v for basudin, from 5 ,M to 0.1 ,M for HgCl2, and from 50 ,M to 1 ,M for BP. In particular, 100% mortality was caused by a 1-h exposure to 1/105 v/v basudin, or 2 ,M HgCl2, or 25 ,M BP, and by a 24-h exposure to 1/106 v/v basudin, 0.5 ,M HgCl2, or 5 ,M BP. A significant decrease in the daily mean fission rate (P<0.001) was found after exposure to 1/107 v/v basudin, or 0.25 ,M HgCl2, or 1 ,M BP. Moreover, as it is well known that the inhibition of acetylcholinesterase (AChE) activity represents a specific biomarker for neurotoxic drugs, we first detected this enzyme activity in E. crassus, using cytochemical, spectrophotometric, and electrophoretic methods; then, AChE activity was characterized by its sensitivity to specific AChE inhibitors and to variations in pH and temperature. Like AChE present in higher organisms, the AChE activity detected in E. crassus was inhibited by exposure to basudin. Conversely, exposure to HgCl2, or PB did not inhibit AChE activity, but caused a significant reduction in lysosomal membrane stability. [source] Comparison of DNA- and RNA-based bacterial community structures in soil exposed to 2,4-dichlorophenolJOURNAL OF APPLIED MICROBIOLOGY, Issue 6 2009L. Lillis Abstract Aims:, To examine the effect of the pollutant 2,4-dichlorophenol on DNA- and RNA-based bacterial communities in soil. Methods and Results:, Soil was exposed to 100 mg kg,1 of 2,4-dichlorophenol (2,4-DCP), and degradation was monitored over 35 days. DNA and RNA were coextracted, and terminal restriction fragment length polymorphism (T-RFLP) was used to report changes in bacterial communities in response to the presence of the chlorophenol. The phylogenetic composition of the soil during degradation was determined by creating a clone library of amplified 16S rRNA sequences from both DNA and reverse-transcribed RNA from exposed soil. Resulting clones were sequenced, and putative identities were assigned. Conclusions:, A significant difference between active (RNA-based) and total (DNA-based) bacterial community structure was observed for both T-RFLP and phylogenetic analyses in response to 2,4-DCP, with more pronounced changes seen in RNA-based communities. Phylogenetic analysis indicated the dominance of Proteobacteria in both profiles. Significance and Impact of the Study:, This study describes the response of soil bacterial communities to the addition of the xenobiotic compound 2,4-DCP, and highlights the importance of including RNA-based 16S rRNA analysis to complement any molecular study in a perturbed soil. [source] Impact of five selected xenobiotics on isolated ammonium oxidizers and on nitrifying activated sludgeENVIRONMENTAL TOXICOLOGY, Issue 4 2006S. N. Dokianakis Abstract Sewage treatment plants (STPs) are usual receptors of xenobiotic compounds that have to be cotreated with municipal wastewaters before being discharged to the water environment. The presence of organic contaminants, such as surfactants, polycyclic aromatic hydrocarbons (PAHs), phthalates, and their primary degradation products in the influents of STPs may inhibit irreversibly sensitive biological processes, such as nitrification. The first step of nitrification, i.e., the oxidation of ammonium to nitrite (nitritification), is particularly sensitive. Inhibition of this step under uncontrolled conditions may completely inhibit biological nitrogen removal. The aim of this work was to study the possible inhibitory effect of five selected xenobiotics on (a) a mixed culture of ammonium-oxidizing bacteria isolated from activated sludge and (b) nitrifying activated sludge directly. The xenobiotics that were tested include nonylphenols (NP), nonylphenolethoxylates (NPEO), linear alkylbenzene sulfonates (LAS), di(2-ethylhexyl) phthalate (DEHP), as a representative phthalate ester, and the PAH phenanthrene. Remarkable inhibitory effects for all tested compounds were observed in this study even at xenobiotic concentrations as low as 1 mg/L. The observed inhibition of xenobiotics on nitrifying activated sludge was less pronounced, because of the masking effect exerted by the sludge flocs, but was still significant for many of the tested substances at concentrations up to 10 mg/L. © 2006 Wiley Periodicals, Inc. Environ Toxicol 21: 310,316, 2006. [source] Combination of microautoradiography and fluorescence in situ hybridization for identification of microorganisms degrading xenobiotic contaminantsENVIRONMENTAL TOXICOLOGY & CHEMISTRY, Issue 12 2003Yanru Yang Abstract One of the central topics in environmental bioremediation research is to identify microorganisms that are capable of degrading the contaminants of interest. Here we report application of combined microautoradiography (MAR) and fluorescence in situ hybridization (FISH). The method has previously been used in a number of systems; however, here we demonstrate its feasibility in studying the degradation of xenobiotic compounds. With a model system (coculture of Pseudomonas putida B2 and Sphingomonas stygia incubated with [14C] o -nitrophenol), combination of MAR and FISH was shown to be able to successfully identify the microorganisms degrading o -nitrophenol. Compared with the conventional techniques, MAR-FISH allows fast and accurate identification of the microorganisms involved in environmental contaminant degradation. [source] Glutathione depletion in hippocampal cells increases levels of H and L ferritin and glutathione S-transferase mRNAsGENES TO CELLS, Issue 5 2007Nadya Morozova Glutathione plays an essential role in maintaining cellular redox balance, protecting cells from oxidative stress and detoxifying xenobiotic compounds. Glutathione depletion has been implicated in neurodegenerative disorders, including Alzheimer's and Parkinson's diseases. Cells of neuronal origin are acutely sensitive to glutathione depletion, providing an avenue for studying the mechanisms invoked for neuronal survival in response to oxidant challenge. We investigated the changes in mRNA profile in HT22 hippocampal cells following administration of homocysteic acid (HCA), a glutathione-depleting drug. We report that HCA treatment of HT22 murine hippocampal cells increases the levels of the mRNAs encoding at least three proteins involved in protection from oxidant injury, the mRNAs encoding heavy (H) and light (L) ferritin and glutathione S-transferase (GST). [source] Insect glutathione transferases and insecticide resistanceINSECT MOLECULAR BIOLOGY, Issue 1 2005A. A. Enayati Abstract Glutathione transferases (GSTs) are a diverse family of enzymes found ubiquitously in aerobic organisms. They play a central role in the detoxification of both endogenous and xenobiotic compounds and are also involved in intracellular transport, biosynthesis of hormones and protection against oxidative stress. Interest in insect GSTs has primarily focused on their role in insecticide resistance. GSTs can metabolize insecticides by facilitating their reductive dehydrochlorination or by conjugation reactions with reduced glutathione, to produce water-soluble metabolites that are more readily excreted. In addition, they contribute to the removal of toxic oxygen free radical species produced through the action of pesticides. Annotation of the Anopheles gambiae and Drosophila melanogaster genomes has revealed the full extent of this enzyme family in insects. This mini review describes the insect GST enzyme family, focusing specifically on their role in conferring insecticide resistance. [source] Toward an "omic" physiopathology of reactive chemicals: Thirty years of mass spectrometric study of the protein adducts with endogenous and xenobiotic compoundsMASS SPECTROMETRY REVIEWS, Issue 5 2009Federico Maria Rubino Abstract Cancer and degenerative diseases are major causes of morbidity and death, derived from the permanent modification of key biopolymers such as DNA and regulatory proteins by usually smaller, reactive molecules, present in the environment or generated from endogenous and xenobiotic components by the body's own biochemical mechanisms (molecular adducts). In particular, protein adducts with organic electrophiles have been studied for more than 30 [see, e.g., Calleman et al., 1978] years essentially for three purposes: (a) as passive monitors of the mean level of individual exposure to specific chemicals, either endogenously present in the human body or to which the subject is exposed through food or environmental contamination; (b) as quantitative indicators of the mean extent of the individual metabolic processing which converts a non-reactive chemical substance into its toxic products able to damage DNA (en route to cancer induction through genotoxic mechanisms) or key proteins (as in the case of several drugs, pesticides or otherwise biologically active substances); (c) to relate the extent of protein modification to that of biological function impairment (such as enzyme inhibition) finally causing the specific health damage. This review describes the role that contemporary mass spectrometry-based approaches employed in the qualitative and quantitative study of protein,electrophile adducts play in the discovery of the (bio)chemical mechanisms of toxic substances and highlights the future directions of research in this field. A particular emphasis is given to the measurement of often high levels of the protein adducts of several industrial and environmental pollutants in unexposed human populations, a phenomenon which highlights the possibility that a number of small organic molecules are generated in the human organism through minor metabolic processes, the imbalance of which may be the cause of "spontaneous" cases of cancer and of other degenerative diseases of still uncharacterized etiology. With all this in mind, it is foreseen that a holistic description of cellular functions will take advantage of new analytical methods based on time-integrated metabolomic measurements of a new biological compartment, the "adductome," aimed at better understanding integrated organism response to environmental and endogenous stressors. © 2009 Wiley Periodicals, Inc., Mass Spec Rev 28:725,784, 2009 [source] Technical considerations for RNA-based stable isotope probing: an approach to associating microbial diversity with microbial community function,RAPID COMMUNICATIONS IN MASS SPECTROMETRY, Issue 23 2002Mike Manefield An ongoing challenge within microbial ecology is the development of methodologies that attribute microbial community functions to microbial diversity. One approach, involving the incorporation of stable isotopes from labelled tracer compounds into biological signature molecules (biomarkers), may overcome this current limitation. To examine the potential of RNA as the biomarker in stable isotope probing we have generated a series of atom % 13C-enriched RNA samples through exploitation of the anabolic abilities of a phenol-degrading environmental isolate. Isotope ratio mass spectrometry was used to determine the atom % 13C of each RNA sample (ca. 1,100%). The corresponding buoyant density (1.755,1.795,g,mL,1) was determined by equilibrium density gradient centrifugation and agarose gel electrophoresis. This empirically defined relationship between the atom % 13C of RNA and its buoyant density suggests ribonucleic acids with atom % 13C enrichments greater than 10% can be isolated by equilibrium density centrifugation. The processing and analysis of isolated RNA by reverse transcription polymerase chain reaction, denaturing gradient gel electrophoresis, cloning and sequencing are discussed. The RNA-based stable isotope probing protocol presented here will find particular utility in assessing the roles of microbial community members in the biodegradation of natural and anthropogenic xenobiotic compounds. Copyright © 2002 John Wiley & Sons, Ltd. [source] Effects of Xenobiotic Compounds on Cell Activities in Euplotes crassusTHE JOURNAL OF EUKARYOTIC MICROBIOLOGY, Issue 2 2005FRANCESCA TRIELLI It is now widely accepted that Protists are relevant bioassays to be exploited for the study of environmental modifications due to the presence of xenobiotic compounds. In this work, we evaluated the possibility of utilizing Euplotes crassus, an interstitial marine ciliate, for the pre-chemical screening of environmental sites, such as estuarine and coastal sediments. With this aim, we tested the sensitivity of E. crassus to exposure to three classes of pollutants: an organophosphate neurotoxic drug, basudin, largely used for pest control in agricultural sites, a toxic heavy metal, mercury (HgCl2), and an aromatic polycyclic hydrocarbon, benzopyrene (BP). We found a dose-dependent effect of these compounds on cell viability at concentrations ranging from 1/102 v/v to 1/107 v/v for basudin, from 5 ,M to 0.1 ,M for HgCl2, and from 50 ,M to 1 ,M for BP. In particular, 100% mortality was caused by a 1-h exposure to 1/105 v/v basudin, or 2 ,M HgCl2, or 25 ,M BP, and by a 24-h exposure to 1/106 v/v basudin, 0.5 ,M HgCl2, or 5 ,M BP. A significant decrease in the daily mean fission rate (P<0.001) was found after exposure to 1/107 v/v basudin, or 0.25 ,M HgCl2, or 1 ,M BP. Moreover, as it is well known that the inhibition of acetylcholinesterase (AChE) activity represents a specific biomarker for neurotoxic drugs, we first detected this enzyme activity in E. crassus, using cytochemical, spectrophotometric, and electrophoretic methods; then, AChE activity was characterized by its sensitivity to specific AChE inhibitors and to variations in pH and temperature. Like AChE present in higher organisms, the AChE activity detected in E. crassus was inhibited by exposure to basudin. Conversely, exposure to HgCl2, or PB did not inhibit AChE activity, but caused a significant reduction in lysosomal membrane stability. [source] Computational framework for predictive biodegradationBIOTECHNOLOGY & BIOENGINEERING, Issue 6 2009Stacey D. Finley Abstract As increasing amounts of anthropogenic chemicals are released into the environment, it is vital to human health and the preservation of ecosystems to evaluate the fate of these chemicals in the environment. It is useful to predict whether a particular compound is biodegradable and if alternate routes can be engineered for compounds already known to be biodegradable. In this work, we describe a computational framework (called BNICE) that can be used for the prediction of novel biodegradation pathways of xenobiotics. The framework was applied to 4-chlorobiphenyl, phenanthrene, ,-hexachlorocyclohexane, and 1,2,4-trichlorobenzene, compounds representing various classes of xenobiotics with known biodegradation routes. BNICE reproduced the proposed biodegradation routes found experimentally, and in addition, it expanded the biodegradation reaction networks through the generation of novel compounds and reactions. The novel reactions involved in the biodegradation of 1,2,4-trichlorobenzene were studied in depth, where pathway and thermodynamic analyses were performed. This work demonstrates that BNICE can be applied to generate novel pathways to degrade xenobiotic compounds that are thermodynamically feasible alternatives to known biodegradation routes and attractive targets for metabolic engineering. Biotechnol. Bioeng. 2009; 104: 1086,1097. © 2009 Wiley Periodicals, Inc. [source] | |||||||||||||