Voucher Specimens (voucher + specimen)

Distribution by Scientific Domains


Selected Abstracts


Snailfishes of the central California coast: video, photographic and morphological observations

JOURNAL OF FISH BIOLOGY, Issue 4 2006
D. L. Stein
Video and photographic images of snailfishes (Liparidae) collected by the Monterey Bay Aquarium Research Institute, augmented by specimens collected simultaneously, were analysed. Nine species in five genera were identified, including Careproctus melanurus, Careproctus ovigerus, Careproctus longifilis, Careproctus gilberti, Careproctus filamentosus, Osteodiscus cascadiae, Nectoliparis pelagicus, Paraliparis dactylosus and Rhinoliparis barbulifer. Voucher specimens were collected of all except C. melanurus, C. gilberti and C. filamentosus. In addition, individuals of the Paraliparis,rosaceus' species group were abundant but could not be identified to species. Many liparids were identified only to family, but an individual of a very distinctive unknown species, presumably undescribed, was videotaped. Relative abundance of C. melanurus was estimated, and several in situ snailfish behaviours are described for the first time. [source]


Integrating DNA data and traditional taxonomy to streamline biodiversity assessment: an example from edaphic beetles in the Klamath ecoregion, California, USA

DIVERSITY AND DISTRIBUTIONS, Issue 5 2006
Ryan M. Caesar
ABSTRACT Conservation and land management decisions may be misguided by inaccurate or misinterpreted knowledge of biodiversity. Non-systematists often lack taxonomic expertise necessary for an accurate assessment of biodiversity. Additionally, there are far too few taxonomists to contribute significantly to the task of identifying species for specimens collected in biodiversity studies. While species level identification is desirable for making informed management decisions concerning biodiversity, little progress has been made to reduce this taxonomic deficiency. Involvement of non-systematists in the identification process could hasten species identification. Incorporation of DNA sequence data has been recognized as one way to enhance biodiversity assessment and species identification. DNA data are now technologically and economically feasible for most scientists to apply in biodiversity studies. However, its use is not widespread and means of its application has not been extensively addressed. This paper illustrates how such data can be used to hasten biodiversity assessment of species using a little-known group of edaphic beetles. Partial mitochondrial cytochrome oxidase I was sequenced for 171 individuals of feather-wing beetles (Coleoptera: Ptiliidae) from the Klamath ecoregion, which is part of a biodiversity hotspot, the California Floristic Province. A phylogram of these data was reconstructed via parsimony and the strict consensus of 28,000 equally parsimonious trees was well resolved except for peripheral nodes. Forty-two voucher specimens were selected for further identification from clades that were associated with many synonymous and non-synonymous nucleotide changes. A ptiliid taxonomic expert identified nine species that corresponded to monophyletic groups. These results allowed for a more accurate assessment of ptiliid species diversity in the Klamath ecoregion. In addition, we found that the number of amino acid changes or percentage nucleotide difference did not associate with species limits. This study demonstrates that the complementary use of taxonomic expertise and molecular data can improve both the speed and the accuracy of species-level biodiversity assessment. We believe this represents a means for non-systematists to collaborate directly with taxonomists in species identification and represents an improvement over methods that rely solely on parataxonomy or sequence data. [source]


Lessons from leeches: a call for DNA barcoding in the lab

EVOLUTION AND DEVELOPMENT, Issue 6 2006
Alexandra E. Bely
SUMMARY Many evolution of development labs study organisms that must be periodically collected from the wild. Whenever this is the case, there is the risk that different field collections will recover genetically different strains or cryptic species. Ignoring this potential for genetic variation may introduce an uncontrolled source of experimental variability, leading to confusion or misinterpretation of the results. Leeches in the genus Helobdella have been a workhorse of annelid developmental biology for 30 years. Nearly all early Helobdella research was based on a single isolate, but in recent years isolates from multiple field collections and multiple sites across the country have been used. To assess the genetic distinctness of different isolates, we obtained specimens from most Helobdella laboratory cultures currently or recently in use and from some of their source field sites. From these samples, we sequenced part of the mitochondrial gene cytochrome oxidase I (COI). Sequence divergences and phylogenetic analyses reveal that, collectively, the Helobdella development community has worked on five distinct species from two major clades. Morphologically similar isolates that were thought to represent the same species (H. robusta) actually represent three species, two of which coexist at the same locality. Another isolate represents part of a species complex (the "H. triserialis" complex), and yet another is an invasive species (H. europaea). We caution researchers similarly working on multiple wild-collected isolates to preserve voucher specimens and to obtain from these a molecular "barcode," such as a COI gene sequence, to reveal genetic variation in animals used for research. [source]


PERSPECTIVE: Underutilized resources for studying the evolution of invasive species during their introduction, establishment, and lag phases

EVOLUTIONARY APPLICATIONS (ELECTRONIC), Issue 2 2010
Travis D. Marsico
Abstract The early phases of biological invasions are poorly understood. In particular, during the introduction, establishment, and possible lag phases, it is unclear to what extent evolution must take place for an introduced species to transition from established to expanding. In this study, we highlight three disparate data sources that can provide insights into evolutionary processes associated with invasion success: biological control organisms, horticultural introductions, and natural history collections. All three data sources potentially provide introduction dates, information about source populations, and genetic and morphological samples at different time points along the invasion trajectory that can be used to investigate preadaptation and evolution during the invasion process, including immediately after introduction and before invasive expansion. For all three data sources, we explore where the data are held, their quality, and their accessibility. We argue that these sources could find widespread use with a few additional pieces of data, such as voucher specimens collected at certain critical time points during biocontrol agent quarantine, rearing, and release and also for horticultural imports, neither of which are currently done consistently. In addition, public access to collected information must become available on centralized databases to increase its utility in ecological and evolutionary research. [source]


The flora of the South Sandwich Islands, with particular reference to the influence of geothermal heating

JOURNAL OF BIOGEOGRAPHY, Issue 6 2000
P. Convey
Abstract Aim, To carry out as comprehensive a survey as practicable of the flora (higher plants, mosses, liverworts, lichens, basidiomycete fungi and diatoms) of the isolated, volcanically active, South Sandwich Islands archipelago in the southern South Atlantic. To relate the components of this flora to (1) the influence of local geothermal heating and (2) wider regional floras. Location, South Sandwich Islands, southern South Atlantic Ocean, maritime Antarctic (56,60° S, 26,28° W). Methods, Ice-free accessible sites on all 11 of the major islands in the archipelago were visited by helicopter in January 1997. During each visit, voucher specimens of each floral group were collected. The comprehensiveness of collections obtained at each site varied with the duration of each visit (a function of tight logistic constraints) and extent of site. Visit duration varied from 1 to 9 h at most sites, with longer periods spent on Bellingshausen Island (2 days) and Leskov Island (1 day). Candlemas Island was examined in greater detail over a 4-week period in February 1997. At all sites, particular attention was given to areas influenced by geothermal heating. Results, Data obtained in 1997 are combined with updated records from the only previous survey (in 1964) to provide a baseline description of the flora of the archipelago, which currently includes 1 phanerogam, 38 mosses, 11 liverworts, 5 basidiomycete fungi, 41 lichenised fungi and 16 diatoms with, additionally, several taxa identified only to genus. Major elements of the moss and liverwort floras are composed of South American taxa (32% and 73%, respectively), with a further 45% of mosses having bipolar or cosmopolitan distributions. These two groups show low levels of Antarctic endemicity (11% and 18%, respectively). In contrast, 52% of lichens and 80% of basidiomycete fungi are endemic to the Antarctic. A further 36% of lichens are bipolar/cosmopolitan, with only 5% of South American origin. Main Conclusions, The flora of the South Sandwich Islands is clearly derived from those of other Antarctic zones. The flora of unheated ground is closely related to that of the maritime Antarctic, although with a very limited number of species represented. That of heated ground contains both maritime and sub-Antarctic elements, confirming the importance of geothermal heating for successful colonisation of the latter group. The occurrence of several maritime Antarctic species only on heated ground confirms the extreme severity of the archipelago's climate in comparison with well-studied sites much further south in this biogeographical zone. [source]


DNA barcoding in Tardigrada: the first case study on Macrobiotus macrocalix Bertolani & Rebecchi 1993 (Eutardigrada, Macrobiotidae)

MOLECULAR ECOLOGY RESOURCES, Issue 3 2009
MICHELE CESARI
Abstract Morphological and molecular studies on a tardigrade species have been carried out to verify the possibility of using a DNA barcoding approach for species identification in this phylum. Macrobiotus macrocalix Bertolani & Rebecchi, 1993 was chosen as the test species since it belongs to a group of species in which the taxonomy is quite problematic. Animals and eggs belonging to three Italian and one Swedish populations have been investigated. Both morphological and molecular analyses show that all the populations belong to the same species. The low genetic distances recorded among the studied populations (0.3,1.0%) and the high genetic distance (15.9,16.3%) between these populations and a closely related species confirm the possibility of identifying a specimen of this species by its cytochrome oxidase subunit I sequence. Data from other authors support our results indicating that DNA barcoding can be applied to tardigrades. With our protocols, we have obtained voucher specimens that enable us to show a correspondence between morphology and molecular data. [source]