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Transfer Reactions (transfer + reaction)
Kinds of Transfer Reactions Selected AbstractsChiral Chalcogen Peptides as Ligands for the Catalytic Enantioselective Aryl Transfer Reaction to AldehydesEUROPEAN JOURNAL OF ORGANIC CHEMISTRY, Issue 19 2010Ricardo S. Schwab Abstract A new series of chiral chalcogen peptides were synthesized from inexpensive and commercially available starting materials. The synthesized compounds were tested as catalysts in the enantioselective arylation of aldehydes by using arylboronic acids as the aryl source. The desired diarylmethanols were obtained in excellent yields and with enantioselectivities up to 91,% ee. [source] A Highly Enantioselective and Catalytic Aryl Transfer Reaction Using Mixed Triarylbismuthane and Dialkylzinc ReagentsEUROPEAN JOURNAL OF ORGANIC CHEMISTRY, Issue 16 2007Itaru Sato Abstract Highly enantioselective and catalytic aryl transfer reactions to aromatic aldehydes by using mixed triarylbismuthane and dimethylzinc reagents were studied. In the presence of a chiral ,-amino alcohol catalyst, chiral diarylmethanols with up to 97,% ee were obtained. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2007) [source] A Convenient Preparation of a Series of 2-Aryl-Substituted Imidazolidines Through Diamine Transfer Reaction.CHEMINFORM, Issue 50 2005Donghong Li Abstract For Abstract see ChemInform Abstract in Full Text. [source] New Chiral Ligands Derived from Mandelic Acid: Synthesis and Application in the Asymmetric Phenyl Transfer Reaction to an Aromatic Aldehyde.CHEMINFORM, Issue 4 2005Carsten Bolm Abstract For Abstract see ChemInform Abstract in Full Text. [source] Selective Reduction of C=O in ,,,-Unsaturated Carbonyls Through Catalytic Hydrogen Transfer Reaction over Mixed Metal Oxides.CHEMINFORM, Issue 20 2004Sachin U. Sonavane Abstract For Abstract see ChemInform Abstract in Full Text. [source] Synthesis of 1-Alkynyl(diphenyl)onium Salts of Group 16 Elements via Heteroatom Transfer Reaction of 1-Alkynyl(phenyl)-,3 -iodanes.CHEMINFORM, Issue 36 2003Masahito Ochiai Abstract For Abstract see ChemInform Abstract in Full Text. [source] ChemInform Abstract: Tetraethylammonium Bromide Catalyzed Phase Transfer Reaction of Potassium Superoxide with Hydrazones and Tosylhydrazones.CHEMINFORM, Issue 41 2001Rajesh Kumar Abstract ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 100 leading journals. To access a ChemInform Abstract of an article which was published elsewhere, please select a "Full Text" option. The original article is trackable via the "References" option. [source] Bis(dithiolene) Molybdenum Complex that Promotes Combined Coupled Electron,Proton Transfer and Oxygen Atom Transfer Reactions: A Water-Active Model of the Arsenite Oxidase Molybdenum CenterEUROPEAN JOURNAL OF INORGANIC CHEMISTRY, Issue 22 2006Hideki Sugimoto Abstract Combined CEPT (coupled electron,proton transfer)/OAT (oxygen atom transfer) reactions were accomplished in (Bu4N)2[MoIVO(bdtCl2)2] (1) and (Bu4N)2[MoVIO2(bdtCl2)2] (2) complexes in aqueous media. The reaction mechanism of the CEPT reaction was analyzed electrochemically and the conversion of 1 to 2 was revealed to proceed by a two-proton two-electron oxidative process. The structural and reaction profiles provide a new model for the arsenite oxidase catalytic center. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2006) [source] Stable ,Floating' Air Diffusion Biocathode Based on Direct Electron Transfer Reactions Between Carbon Particles and High Redox Potential LaccaseFUEL CELLS, Issue 4 2010S. Shleev Abstract We report on the assembly and characterisation of a high potential, stable, mediator-less and cofactor free biocathode based on a fungal laccase (Lc), adsorbed on highly dispersed carbonaceous materials. First, the stability and activity of Trametes hirsuta Lc immobilised on different carbon particles were studied and compared to the solubilised enzyme. Based on the experimental results and a literature analysis, the carbonaceous material BM-4 was chosen to design efficient and stable biocatalysts for the production of a ,floating' air diffusion Lc-based biocathode. Voltammetric characteristics and operational stability of the biocathode were investigated. The current density of oxygen reduction at the motionless biocathode in a quiet, air saturated citrate buffer (100,mM, pH 4.5, 23,°C) reached values as high as 0.3,mA,cm,2 already at 0.7,V versus NHE. The operational stability of the biocathode depended on the current density of the device. For example, at low current density (20,,A,cm,2), the biocathode lost only 5× of its initial power after 1 month of continuous operation. However, when the device was polarised at 150,mV it lost more than 32× of its initial power in just 10,min. We also found that co-immobilisation of Lc and peroxidase on highly dispersed carbon materials could protect the biocatalyst from rapid inactivation by hydrogen peroxide produced during electrocatalytic reactions at high-current densities. [source] The gem-Dialkyl Effect in Electron Transfer Reactions: Rapid Synthesis of Seven-Membered Rings Through an Electrochemical Annulation.CHEMINFORM, Issue 42 2005Jeffrey B. Sperry Abstract For Abstract see ChemInform Abstract in Full Text. [source] Enantioselective H-Atom Transfer Reactions: A New Methodology for the Synthesis of ,2 -Amino Acids.CHEMINFORM, Issue 26 2004Mukund P. Sibi Abstract For Abstract see ChemInform Abstract in Full Text. [source] Photoinduced Electron Transfer Reactions by SmI2 in THF: Luminescence Quenching Studies and Mechanistic InvestigationsCHEMISTRY - A EUROPEAN JOURNAL, Issue 10 2005Edamana Prasad Dr. Abstract Photoluminescence quenching studies of SmI2 in dry THF were carried out in the presence of five different classes of compounds: ketone, alkyl chloride, nitrile, alkene and imine. The free energy change (,G,0) of the photoinduced electron transfer (PET) reactions was calculated from the redox potentials of the donor (SmI2) and acceptors. The bimolecular quenching constants (kq) derived from the Stern,Volmer experiments parallel the free energy changes of the PET processes. The observed quenching constants were compared with the theoretically derived electron transfer rate constants (ket) from Marcus theory and found to be in good agreement when a value of ,=167 kJ,mol,1 (40 kcal,mol,1) was used for the reorganization energy of the system. A careful comparison of the excited state dynamics of SmII in the solid state to the results obtained in solution (THF) provides new insight in to the excited states of SmII in THF. The activation parameters determined for the PET reactions in SmI2/1-chlorobutane system are consistent with a less ordered transition state and high degree of bond reorganization in the activated complex compared to similar ground state reactions. Irradiation studies clearly show that SmI2 acts as a better reductant in the excited state and provides an alternative pathway for rate enhancement in known and novel functional group reductions. [source] Theoretical Studies on Proton Transfer Reactions of 8-Hydroxyquinoline Monomers and DimersCHINESE JOURNAL OF CHEMISTRY, Issue 6 2006Ji-Yang Zhao Abstract Density functional theory (DFT) of quantum chemistry method was employed to investigate proton transfer reactions of 8-hydroxyquinoline (8-HQ) monomers and dimers. By studying the potential energy curves of the isomerization, the most possible reaction pathway was found. The total energy of 8-hydroxyquinoline was lower than that of quinolin-8(1H)-one, whereas the order was reversed in dimers. The findings explained the contrary experimental phenomena. The minimum reaction barrier of intramolecular proton transfer was 47.3 kJ/mol while that in dimer was only 25.7 kJ/mol. Hence it is obvious that proton transfer reactions of 8-HQ monomer have a considerable rate but it is easier to proceed for 8-HQ dimer than monomers. It implied that the hydrogen bond played an important role in depressing the activation energy of reaction. The mechanism of the tautomerization was discussed on the basis of theoretical results. [source] Radical Telomerisation of Vinyl Phosphonic Acid with a Series of Chain Transfer AgentsMACROMOLECULAR CHEMISTRY AND PHYSICS, Issue 6 2007Ghislain David Abstract The use of CTAs for the radical polymerisation of VPA has been successfully applied for the first time. Several CTAs were investigated, including thiol, disulfide and halogenated compounds. The use of mercaptoacetic acid led to the synthesis of the mercaptan VPA monoadduct, which was attributed to a high transfer constant (CT,=,ktr/kp) of approximately 7. Transfer reactions with VPA appeared to be unsuccessful when using benzyldisulfide, 1,1,1-trichloroethane and trichloroacetic acid. Application of bromotrichloromethane as a transfer agent led to the oligomerisation of VPA, with final conversion being approximately 80%. The transfer events were characterised by 13C NMR, MALDI-TOF and elemental analysis. Molecular weights of the successful VPA polymerisations showed values ranging from 600 to 5,000 g,·,mol,1, which were in close agreement with the theoretically calculated values. [source] Hydrido-Osmium(II), -Osmium(IV) and-Osmium(VI) Complexes with Functionalized Phosphanes as Ligands,EUROPEAN JOURNAL OF INORGANIC CHEMISTRY, Issue 35 2009Birgit Richter Abstract Reaction of five-coordinate [OsHCl(CO)(PiPr3)2] (1) with the chelating phosphane iPr2PCH2CO2Me gave six-coordinate [OsHCl(CO)(PiPr3){,2(P,O)- iPr2PCH2C(=O)OMe}] (2), which upon treatment with CO and O2 afforded the 1:1 adducts [OsHCl(CO)(L)(PiPr3){,(P)- iPr2PCH2CO2Me}] (3, 4) by partial opening of the chelate ring. The vinyl complex [OsCl(CH=CHPh)(CO)(PiPr3){,2(P,O)- iPr2PCH2C(=O)OMe}] (5) was obtained from 2 and PhC,CH by insertion of the alkyne into the Os,H bond. Reaction of 2 with sodium acetate led to metathesis of the anionic ligands and formation of [OsH(,2 -O2CCH3)(CO)(PiPr3){,(P)- iPr2PCH2CO2Me}] (6). Osmium(VI) compounds [OsH6(PiPr2R)2] with R = CH2CH2OMe (12), CH2CO2Me (13) and CH2CO2Et (14), and [OsH6(PiPr3){,(P)- iPr2PCH2CH2NMe2}] (16) were prepared from osmium(IV) precursors and shown to rapidly react with O2 and primary alcohols. Exploratory studies revealed that the catalytic activity of the hexahydrido complexes in the hydrogen transfer reaction from 2-propanol to cyclohexanone and acetophenone depends on the type of the functionalized phosphane and is best for R = CH2CH2OMe. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2009) [source] Synthesis and Structure of Aminopyridinato-Stabilized Yttrium and Lanthanum Amides and Their Reactivity towards Alkylaluminium CompoundsEUROPEAN JOURNAL OF INORGANIC CHEMISTRY, Issue 3 2009Christian Döring Abstract A series of aminopyridinato-stabilized (amido)lanthanide complexes has been synthesized and characterized. The bulky aminopyridines (2,6-diisopropylphenyl)[6-(2,4,6-triisopropylphenyl)pyridin-2-yl]amine (1a) and [6-(2,4,6-triisopropylphenyl)pyridin-2-yl](2,4,6-trimethylphenyl)amine (1b) were introduced by amine elimination reaction with [Ln{N(SiHMe2)2}3(thf)2] (Ln = Y, La, thf = tetrahydrofuran, Me = methyl) to obtain the corresponding mono(aminopyridinato) complexes. Single-crystal X-ray analyses were carried out for the yttrium derivatives. The complexes are not able to undergo coordinative chain transfer polymerization with ethylene in the presence of alkylaluminium compounds as the corresponding dialkyl complexes do. Investigations of the reactions of the lanthanide aminopyridinato complexes with triethylaluminium or diisobutylaluminium hydride reveal a fast transfer of the aminopyridinato ligand to the aluminium atom. The products of this transfer reaction are aminopyridinato-stabilized dialkylaluminium compounds. One example of these aluminium complexes was characterized by X-ray crystal structure analysis. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2009) [source] Mechanistic Insights into Acetophenone Transfer Hydrogenation Catalyzed by Half-Sandwich Ruthenium(II) Complexes Containing 2-(Diphenylphosphanyl)aniline , A Combined Experimental and Theoretical StudyEUROPEAN JOURNAL OF INORGANIC CHEMISTRY, Issue 28 2008Alessia Bacchi Abstract Several new half-sandwich ruthenium(II) complexes containing 2-(diphenyphosphanyl)aniline (PNH2) of formula {Ru[(,2P,N)PNH2](p -cymene)Cl}Y [Y = Cl (1a), PF6 (1b), BF4 (1c), BPh4 (1d), TfO (1e)] were synthesized and fully characterized both in solution (1H NMR and 31P{1H} NMR spectroscopy) and in the solid state (FTIR, X-ray analysis on single crystal). Complexes 1a and 1b are active precatalysts in the hydrogen transfer reaction of acetophenone, leading to tof values up to 4440 h,1. In comparison, the {Ru[(,2P,N)PNMe2](p -cymene)Cl}Cl complex leads to a tof value of 100 h,1 under the same catalytic conditions. The mechanism through which the precatalysts operate was deeply explored by high-resolution MS (ESI) and DFT/PCM studies. The results reveal that the complexes containing PNH2 operate through a bifunctional mechanism analogous to that proposed for diamines and amino alcohol ligands. (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2008) [source] First (Peroxo)vanadium(V) Complex with Heteroligand Formed in Reaction System , Synthesis, Structure and Reactivity of K[VO(O2)(omeida)]·H2O {omeida = N -[2-(2-oxomorpholine-4-yl)ethyl]iminodiacetato(2,)}EUROPEAN JOURNAL OF INORGANIC CHEMISTRY, Issue 11 2003Michal Sivák Abstract The crystalline peroxo complex of vanadium(V), K[VO(O2)(omeida)]·H2O, where omeida is a ,-lactone derivative, N -[2-(2-oxomorpholine-4-yl)ethyl]iminodiacetate(2,), has been obtained by reaction of vanadate with H2O2 and N -(2-hydroxyethyl)ethylenediaminetriacetic acid (HEDTA) in acidic aqueous solution at pH = 3 and 278 K. X-ray analysis revealed a distorted pentagonal-bipyramidal coordination around the vanadium atom, with a typical cis arrangement of oxo and peroxo ligands in apical and equatorial positions, respectively. Two amino nitrogen atoms of the tetradentate omeida(2,)-N1,N2,O1,O2 ligand occupy the neighbouring equatorial positions of the pentagonal plane, and two oxygen atoms of carboxymethyl groups bound to the same N1 nitrogen atom are in equatorial and apical positions. The six-membered lactone ring in omeida was formed in the reaction solution from carboxy and hydroxy groups not involved in coordination with the vanadium atom. The 51V NMR spectra of K[VO(O2)(omeida)]·H2O, and of peroxovanadate/HEDTA/H2O and vanadate/HEDTA/H2O solutions, as well as the 1H NMR spectrum of HEDTA, proved that lactone ring closure proceeds only in peroxovanadate but not vanadate solutions. Spectroscopic investigation of the oxygen transfer reaction from the peroxo ligand in [VO(O2)(omeida)], to the thiolato sulfur atom in [Co(en)2{S(CH2)2NH2}]2+ or [Co(en)2(cyst)]+, and of the oxidation of N -acetyl- L -cysteine by K[VO(O2)(omeida)]·H2O, revealed much more complicated reaction mechanisms than those of other (amino-polycarboxylato)monoperoxo complexes of vanadium(V). (© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2003) [source] Hydrogen Atom Transfer Experiments Provide Chemical Evidence for the Conformational Differences between C - and O -DisaccharidesEUROPEAN JOURNAL OF ORGANIC CHEMISTRY, Issue 27 2010Elisa I. León Abstract The glycopyran-6- O -yl radical promoted hydrogen atom transfer reaction (HAT) between the two pyranose units of ,- D -Manp -(1,4)-,- D -Glcp and ,- D -Manp -(1,4a)-4a-carba-,- D -Glcp disaccharides provides supporting chemical evidence for the conformational differences between O - and C -glycosyl compounds. In the O -disaccharide the 6-alkoxyl radical, generated under oxidative or reductive conditions, abstracts exclusively the hydrogen at C-5, via a completely regioselective 1,8-HAT reaction. This may be attributable to the conformational restriction of the glycosidic and aglyconic bonds due principally to steric and stereoelectronic effects. On the contrary, very little regioselectivity is observed in the homologous C -disaccharide and a mixture of compounds generated by 1,5-, 1,6-, and 1,8-HAT processes where the abstraction occurs at hydrogen atoms positioned at C-4a, C-1,, and C-5,, respectively, has been obtained. This study has been extended to simpler O - and C -glycosides, where the aglycon was a straight n -alkyl alcohol tether of five atoms; in general, all of the results obtained are shown to be consistent with a major conformational flexibility of the C -glycosidic bond. [source] Influence of carbonation on aroma release from liquid systems using an artificial throat and a proton transfer reaction,mass spectrometric technique (PTR,MS)FLAVOUR AND FRAGRANCE JOURNAL, Issue 5 2009Maria Ángeles Pozo-Bayón Abstract To determine whether carbonation affects aroma release from liquid systems, carbonated and non-carbonated flavoured model systems were prepared and volatile release was determined under static (equilibrium) and dynamic conditions. A model flavour system was added as a single compound or as a mixture of the six aroma compounds used in this study. Volatile release under dynamic conditions involved using a home-made device simulating an artificial throat, coupled to a proton transfer mass spectrometer (PTR,MS). The results showed that carbonation increased the release of most of the aroma compounds in both static and in dynamic testing conditions. The extent of this effect depended, however, on the physicochemical characteristics of the aroma compounds (the most volatile and most hydrophobic compounds were affected more). Release was also increased if the aroma compounds were added as a mixture rather than as individual compounds. CO2 appears to be a key factor responsible for the enhanced release of flavourings from carbonated liquid systems. Copyright © 2009 John Wiley & Sons, Ltd. [source] Crystal structure of the Pyrococcus horikoshii DNA primase-UTP complex: implications for the mechanism of primer synthesisGENES TO CELLS, Issue 12 2003Nobutoshi Ito Background:,, In chromosomal DNA replication, DNA primase initiates the synthesis of a dinucleotide on a single-stranded template DNA, and elongates it to form a primer RNA for the replicative DNA polymerase. Although the apo-structure of an archaeal primase has been reported, the mechanism of primer synthesis by the eukaryotic-type primase still remains to be elucidated. Results:,, In this study, we present the crystal structure of the eukaryotic-type DNA primase from the hyperthermophilic archaeon (Pyrococcus horikoshii) with the uridine 5,-triphosphate (UTP). In the present primase-UTP complex, the primase binds the triphosphate moiety of the UTP at the active site, which includes Asp95, Asp97, and Asp280, the essential residues for the nucleotidyl transfer reaction. Conclusion:,, The nucleotide binding geometry in this complex explains the previous biochemical analyses of the eukaryotic primase. Based on the complex structure, we constructed a model between the DNA primase and a primer/template DNA for the primer synthesis. This model facilitates the comprehension of the reported features of DNA primase. [source] Polymer-Supported, Carbon Dioxide-Protected N-Heterocyclic Carbenes: Synthesis and Application in Organo- and Organometallic CatalysisADVANCED SYNTHESIS & CATALYSIS (PREVIOUSLY: JOURNAL FUER PRAKTISCHE CHEMIE), Issue 5 2010Gajanan Manohar Pawar Abstract The synthesis of a resin-supported, carbon dioxide-protected N-heterocyclic carbene (NHC) and its use in organocatalysis and organometallic catalysis are described. The resin-bound carbon dioxide-protected NHC-based catalyst was prepared via ring-opening metathesis copolymerization of 1,4,4a,5,8,8a-hexahydro-1,4,5,8- exo,endo -dimethanonaphthalene (DMNH6) with 3-(bicyclo[2.2.1]hept-5-en-2-ylmethyl)-1-(2-propyl)-3,4,5,6-tetrahydropyrimidin-1-ium-2-carboxylate (M1), using the well-defined Schrock catalyst Mo[N -2,6-(2-Pr)2 -C6H3](CHCMe2Ph)(OCMe3)2 and was used for a series of organocatalytic reactions, i.e., for the trimerization reaction of isocyanates, as well as for the cyanosilylation of carbonyl compounds. In the latter reaction, turn-over numbers (TON) up to 5000 were achieved. In addition, the polymer-supported, carbon dioxide-protected N-heterocyclic carbene served as an excellent progenitor for various polymer-supported metal complexes. It was loaded with a series of rhodium(I), iridium(I), and palladium(II) precursors and the resulting Rh-, Ir-, and Pd-loaded resins were successfully used in the polymerization of phenylacetylene, in the hydrogen transfer reaction to benzaldehyde, as well as in Heck-type coupling reactions. In the latter reaction, TONs up to 100,000 were achieved. M1, as a non-supported analogue of poly-M1- b -DMNH6, as well as the complexes PdCl2[1,3-bis(2-Pr)tetrahydropyrimidin-2-ylidene]2 (Pd-1) and IrBr[1-(norborn-5-ene-2-ylmethyl)-3-(2-Pr)-3,4,5,6-tetrahydropyrimidin-2-ylidine](COD) (Ir-1) were used as homogeneous analogues and their reactivity in the above-mentioned reactions was compared with that of the supported catalytic systems. In all reactions investigated, the TONs achieved with the supported systems were very similar to the ones obtained with the unsupported, homogeneous ones, the turn-over frequencies (TOFs), however, were lower by up to a factor of three. [source] Theoretical study of CH,O hydrogen bond in proton transfer reaction of glycineINTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, Issue 4 2006P. Selvarengan Abstract Density functional theory (DFT) calculations are used to study the strength of the CH,O H-bond in the proton transfer reaction of glycine. Comparison has been made between four proton transfer reactions (ZW1, ZW2, ZW3, SCRFZW) in glycine. The structural parameters of the zwitterionic, transition, and neutral states of glycine are strongly perturbed when the proton transfer takes place. It has been found that the interaction of water molecule at the side chain of glycine is high in the transition state, whereas it is low in the zwitterionic and neutral states. This strongest multiple hydrogen bond interaction in the transition state reduces the barrier for the proton transfer reaction. The natural bond orbital analysis have also been carried out for the ZW2 reaction path, it has been concluded that the amount of charge transfer between the neighboring atoms will decide the strength of H-bond. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2006 [source] Theoretical investigation of charge transfer excitation and charge recombination in acenaphthylene,tetracyanoethylene complexINTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, Issue 1 2003Hai-Bo Yi Abstract Ab initio calculations were performed to investigate the charge separation and charge recombination processes in the photoinduced electron transfer reaction between tetracyanoethylene and acenaphthylene. The excited states of the charge-balanced electron donor,acceptor complex and the singlet state of ion pair complex were studied by employing configuration interaction singles method. The equilibrium geometry of electron donor,acceptor complex was obtained by the second-order Møller,Plesset method, with the interaction energy corrected by the counterpoise method. The theoretical study of ground state and excited states of electron donor,acceptor complex in this work reveals that the S1 and S2 states of the electron donor,acceptor complexes are excited charge transfer states, and charge transfer absorptions that corresponds to the S0 , S1 and S0 , S2 transitions arise from ,,,* excitations. The charge recombination in the ion pair complex will produce the charge-balanced ground state or excited triplet state. According to the generalized Mulliken,Hush model, the electron coupling matrix elements of the charge separation process and the charge recombination process were obtained. Based on the continuum model, charge transfer absorption and charge transfer emission in the polar solvent of 1,2-dichloroethane were investigated. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem 94: 23,35, 2003 [source] Nitric Acid Dissociation at an Aqueous Surface: Occurrence and MechanismISRAEL JOURNAL OF CHEMISTRY, Issue 2 2009Shuzhi Wang Here we briefly review some highlights of our recent work on the acid dissociation of nitric acid HNO3 at an aqueous surface, a proton transfer reaction of interest not only from a fundamental perspective, but also in connection with heterogeneous chemistry in a wide range of atmospheric contexts. Two types of studies of the potential acid dissociation are discussed, quantum chemical reaction path calculations to assess the reaction free energy and Car-Parrinello molecular dynamics simulations to assess the reaction feasibility. We discuss the agreement and disagreement between the predictions of these two calculations as a function of the initial location of the HNO3 molecule, ranging from a positioning on top of the aqueous surface to one several water layers below the surface. Special attention is given to the four key water solvent motions found to be necessary for the proton transfer reaction to occur. Finally, an Eigen cation, rather than a Zundel cation, is in all cases found to be predominant next to the nitrate ion in contact ion pairs produced in the acid dissociation. This predominance remains, although diminished, for solvent-separated ion pairs. [source] Implementation of an adaptive umbrella sampling method for the calculation of multidimensional potential of mean force of chemical reactions in solutionJOURNAL OF COMPUTATIONAL CHEMISTRY, Issue 14 2003Ramkumar Rajamani Abstract We describe the implementation of an adaptive umbrella sampling method, making use of the weighted histogram analysis method, for computing multidimensional potential of mean force for chemical reaction in solution. The approach is illustrated by investigating the effect of aqueous solution on the free energy surface for the proton transfer reaction of [H3N,H,NH3]+ using a combined quantum mechanical and molecular mechanical AM1/TIP3P potential. © 2003 Wiley Periodicals, Inc. J Comput Chem 24: 1775,1781, 2003 [source] Comparison of linear-scaling semiempirical methods and combined quantum mechanical/molecular mechanical methods for enzymic reactions.JOURNAL OF COMPUTATIONAL CHEMISTRY, Issue 14 2002Abstract QM/MM methods have been developed as a computationally feasible solution to QM simulation of chemical processes, such as enzyme-catalyzed reactions, within a more approximate MM representation of the condensed-phase environment. However, there has been no independent method for checking the quality of this representation, especially for highly nonisotropic protein environments such as those surrounding enzyme active sites. Hence, the validity of QM/MM methods is largely untested. Here we use the possibility of performing all-QM calculations at the semiempirical PM3 level with a linear-scaling method (MOZYME) to assess the performance of a QM/MM method (PM3/AMBER94 force field). Using two model pathways for the hydride-ion transfer reaction of the enzyme dihydrofolate reductase studied previously (Titmuss et al., Chem Phys Lett 2000, 320, 169,176), we have analyzed the reaction energy contributions (QM, QM/MM, and MM) from the QM/MM results and compared them with analogous-region components calculated via an energy partitioning scheme implemented into MOZYME. This analysis further divided the MOZYME components into Coulomb, resonance and exchange energy terms. For the model in which the MM coordinates are kept fixed during the reaction, we find that the MOZYME and QM/MM total energy profiles agree very well, but that there are significant differences in the energy components. Most significantly there is a large change (,16 kcal/mol) in the MOZYME MM component due to polarization of the MM region surrounding the active site, and which arises mostly from MM atoms close to (<10 Å) the active-site QM region, which is not modelled explicitly by our QM/MM method. However, for the model where the MM coordinates are allowed to vary during the reaction, we find large differences in the MOZYME and QM/MM total energy profiles, with a discrepancy of 52 kcal/mol between the relative reaction (product,reactant) energies. This is largely due to a difference in the MM energies of 58 kcal/mol, of which we can attribute ,40 kcal/mol to geometry effects in the MM region and the remainder, as before, to MM region polarization. Contrary to the fixed-geometry model, there is no correlation of the MM energy changes with distance from the QM region, nor are they contributed by only a few residues. Overall, the results suggest that merely extending the size of the QM region in the QM/MM calculation is not a universal solution to the MOZYME- and QM/MM-method differences. They also suggest that attaching physical significance to MOZYME Coulomb, resonance and exchange components is problematic. Although we conclude that it would be possible to reparameterize the QM/MM force field to reproduce MOZYME energies, a better way to account for both the effects of the protein environment and known deficiencies in semiempirical methods would be to parameterize the force field based on data from DFT or ab initio QM linear-scaling calculations. Such a force field could be used efficiently in MD simulations to calculate free energies. © 2002 Wiley Periodicals, Inc. J Comput Chem 23: 1314,1322, 2002 [source] Unusual atmospheric pressure chemical ionization conditions for detection of organic peroxidesJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 9 2003David Rondeau Abstract Organic peroxides such as the cumene hydroperoxide I (Mr = 152 u), the di- tert -butyl peroxide II (Mr = 146 u) and the tert -butyl peroxybenzoate III (Mr = 194 u) were analyzed by atmospheric pressure chemical ionization mass spectrometry using a water,methanol mixture as solvent with a low flow-rate of mobile phase and unusual conditions of the source temperature (,50 °C) and probe temperature (70,200 °C). The mass spectra of these compounds show the formation of (i) an [M + H]+ ion (m/z 153) for the hydroperoxide I, (ii) a stable adduct [M + CH3OH2]+ ion (m/z 179) for the dialkyl peroxide II and (iii) several protonated adduct species such as protonated molecules (m/z 195) and different protonated adduct ions (m/z 227, 389 and 421) for the peroxyester III. Tandem mass spectrometric experiments, exact mass measurements and theoretical calculations were performed for characterize these gas-phase ionic species. Using the double-well energy potential model illustrating a gas-phase bimolecular reaction, three important factors are taken into account to propose a qualitative interpretation of peroxide behavior toward the CH3OH2+, i.e. thermochemical parameters () and two kinetic factors such as the capture constant of the initial stable ion,dipole and the magnitude of the rate constant of proton transfer reaction into the loose proton bond cluster. Copyright © 2003 John Wiley & Sons, Ltd. [source] Reactions of BBrn+ (n = 0,2) at fluorinated and hydrocarbon self-assembled monolayer surfaces: observations of chemical selectivity in ion,surface scatteringJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 7 2001Nathan Wade Abstract Ion,surface reactions involving BBrn+ (n = 0,2) with a fluorinated self-assembled monolayer (F-SAM) surface were investigated using a multi-sector scattering mass spectrometer. Collisions of the B+ ion yield BF2+ at threshold energy with the simpler product ion BF+· appearing at higher collision energies and remaining of lower abundance than BF2+ at all energies examined. In addition, the reactively sputtered ion CF+ accompanies the formation of BF2+ at low collision energies. These results stand in contrast with previous data on the ion,surface reactions of atomic ions with the F-SAM surface in that the threshold and most abundant reaction products in those cases involved the abstraction of a single fluorine atom. Gas-phase enthalpy data are consistent with BF2+ being the thermodynamically favored product. The fact that the abundance of BF2+ is relatively low and relatively insensitive to changes in collision energy suggests that this reaction proceeds through an entropically demanding intermediate at the vacuum,surface interface, one which involves interaction of the B+ ion simultaneously with two fluorine atoms. By contrast with the reaction of B+, the odd-electron species BBr+· reacts with the F-SAM surface to yield an abundant single-fluorine abstraction product, BBrF+. Corresponding gas-phase ion,molecule experiments involving B+ and BBr+· with C6F14 also yield the products BF+· and BF2+, but only in extremely low abundances and with no preference for double fluorine abstraction. Ion,surface reactions were also investigated for BBrn+ (n = 0,2) with a hydrocarbon self-assembled monolayer (H-SAM) surface. Reaction of the B+ ion and dissociative reactions of BBr+· result in the formation of BH2+, while the thermodynamically less favorable product BH+· is not observed. Collisions of BBr2+ with the H-SAM surface yield the dissociative ion,surface reaction products, BBrH+ and BBrCH3+. Substitution of bromine atoms on the projectile by hydrogen or alkyl radicals suggests that Br atoms may be transferred to the surface in a Br-for-H or Br-for-CH3 transfer reaction in an analogous fashion to known transhalogenation reactions at the F-SAM surface. The results for the H-SAM surface stand in contrast to those for the F-SAM surface in that enhanced neutralization of the primary ions gives secondary ion signals one to two orders of magnitude smaller than those obtained when using the F-SAM surface, consistent with the relative ionization energies of the two materials. Copyright © 2001 John Wiley & Sons, Ltd. [source] The effect of disorder on the chemical reactivity of an organic solid, tetraglycine methyl ester: Change of the reaction mechanismJOURNAL OF PHARMACEUTICAL SCIENCES, Issue 2 2002Evgenyi Shalaev Abstract Many drugs undergo chemical changes in the solid state, and understanding chemical reactivity of organic crystals is a critical factor in the drug development process. In this report, the impact of milling on the thermal chemical reactivity of an organic solid, tetraglycine methyl ester, was studied using DSC, isothermal calorimetry, chemical analysis (HPLC and insoluble residue determination), and powder X-ray diffraction. Significant changes in both X-ray diffraction patterns and DSC curves were detected after very brief milling (5 s). The changes were interpreted as the formation of a disordered phase. The disordered phase was tentatively identified as a crystal mesophase that combines properties of both crystalline (i.e., long-range order) and amorphous (i.e., glass transition) states. In the disordered material, the reaction mechanism changed from the methyl transfer reaction, which was observed in the intact crystal, to a polycondensation reaction when the reaction was performed at 165°C. Such changes in the reaction mechanism occurred in materials milled for >,30 s. © 2002 Wiley-Liss, Inc. and the American Pharmaceutical Association J Pharm Sci 91:584,593, 2002 [source] | ||||||||||||||||||||||||||||||||||||||||||||||