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Time Window (time + window)
Kinds of Time Window Selected AbstractsA travelling salesman problem with allocation, time window and precedence constraints , an application to ship schedulingINTERNATIONAL TRANSACTIONS IN OPERATIONAL RESEARCH, Issue 3 2000K. Fagerholt Abstract A Travelling Salesman Problem with Allocation, Time Window and Precedence Constraints (TSP-ATWPC) is considered. The TSP-ATWPC occurs as a subproblem of optimally sequencing a given set of port visits in a real bulk ship scheduling problem, which is a combined multi-ship pickup and delivery problem with time windows and multi-allocation problem. Each ship in the fleet is equipped with a flexible cargo hold that can be partitioned into several smaller holds in a given number of ways, thus allowing multiple products to be carried simultaneously by the same ship. The allocation constraints of the TSP-ATWPC ensure that the partition of the ship's flexible cargo hold and the allocation of cargoes to the smaller holds are feasible throughout the visiting sequence. The TSP-ATWPC is solved as a shortest path problem on a graph whose nodes are the states representing the set of nodes in the path, the last visited node and the accumulated cargo allocation. The arcs of the graph represent transitions from one state to another. The algorithm is a forward dynamic programming algorithm. A number of domination and elimination tests are introduced to reduce the state space. The computational results show that the proposed algorithm for the TSP-ATWPC works, and optimal solutions are obtained to the real ship scheduling problem. [source] Expression of multiple class three semaphorins in the retina and along the path of zebrafish retinal axonsDEVELOPMENTAL DYNAMICS, Issue 10 2007Davon C. Callander Abstract Retinal ganglion cells (RGCs) extend axons that exit the eye, cross the midline at the optic chiasm, and synapse on target cells in the optic tectum. Class three semaphorins (Sema3s) are a family of molecules known to direct axon growth. We undertook an expression screen to identify sema3s expressed in the retina and/or brain close to in-growing RGC axons, which might therefore influence retinal-tectal pathfinding. We find that sema3Aa, 3Fa, 3Ga, and 3Gb are expressed in the retina, although only sema3Fa is present during the time window when the axons extend. Also, we show that sema3Aa and sema3E are present near or at the optic chiasm. Furthermore, sema3C, 3Fa, 3Ga, and 3Gb are expressed in regions of the diencephalon near the path taken by RGC axons. Finally, the optic tectum expresses sema3Aa, 3Fa, 3Fb, and 3Gb. Thus, sema3s are spatiotemporally placed to influence RGC axon growth. Developmental Dynamics 236:2918,2924, 2007. © 2007 Wiley-Liss, Inc. [source] RhoA/ROCK and Cdc42 regulate cell-cell contact and N-cadherin protein level during neurodetermination of P19 embryonal stem cellsDEVELOPMENTAL NEUROBIOLOGY, Issue 3 2004Isabel Laplante Abstract RhoGTPases regulate actin-based signaling cascades and cellular contacts. In neurogenesis, their action modulates cell migration, neuritogenesis, and synaptogenesis. Murine P19 embryonal stem cells differentiate to neurons upon aggregation in the presence of retinoic acid, and we previously showed that RhoA and Cdc42 RhoGTPases are sequentially up-regulated during neuroinduction, suggesting a role at this very early developmental stage. In this work, incubation of differentiating P19 cells with C3 toxin resulted in decreased aggregate cohesion and cadherin protein level. In contrast, C3 effects were not observed in cells overexpressing recombinant dominant active RhoA. On the other hand, C3 did not affect cadherin in uninduced cells and their postmitotic neuronal derivatives, respectively expressing E- and N-cadherin. RhoA is thus influential on cell aggregation and cadherin expression during a sensitive time window that corresponds to the switch of E- to N-cadherin. Cell treatment with Y27632 inhibitor of Rho-associated-kinase ROCK, or advanced overexpression of Cdc42 by gene transfer of a constitutively active form of the protein reproduced C3 effects. RhoA-antisense RNA also reduced cadherin level and the size of cell aggregates, and increased the generation of fibroblast-like cells relative to neurons following neuroinduction. Colchicin, a microtubule disrupter, but not cytochalasin B actin poison, importantly decreased cadherin in neurodifferentiating cells. Overall, our results indicate that the RhoA/ROCK pathway regulates cadherin protein level and cell-cell interactions during neurodetermination, with an impact on the efficiency of the process. The effect on cadherin seems to involve microtubules. The importance of correct timing of RhoA and Cdc42 functional expression in neurogenesis is also raised. © 2004 Wiley Periodicals, Inc. J Neurobiol 60: 289,307, 2004 [source] Early brain lesions and face-processing developmentDEVELOPMENTAL PSYCHOBIOLOGY, Issue 3 2005Scania de Schonen Abstract Studies of functional plasticity after pre- or perinatal brain damage can tell us whether the neural substrate normally involved in the development of a given ability is specific and, if so, when it becomes functionally specified and unique. Development of face processing was investigated in 5- to 17-year-old children who had a unilateral brain injury in the pre-, peri-, or postnatal period. In Studies 1 and 2, patients with a posterior injury involving the temporal regions exhibited a face-processing deficit that was independent of their age at test time. Even though differences were observed between the two hemispheres in face processing during infancy as well as in adults in cases of normal development, no clear differences between right and left injury were observed here in face-processing deficit. Poor postlesional face-processing plasticity seems to contrast with results of several studies on speech development after early unilateral injury. If the difference in the time window for postlesional plasticity between these two areas of competency is confirmed, it would suggest that the two kinds of abilities rely on neural cells which are sensitive to different plasticity factors. © 2005 Wiley Periodicals, Inc. Dev Psychobiol 46: 184,208, 2005. [source] Emergence of long-term memory for conditioned aversion in the rat fetusDEVELOPMENTAL PSYCHOBIOLOGY, Issue 3 2004Nadège Gruest Abstract Pregnant rats were subjected to garlic essential oil as the conditioned stimulus and 45 min later to LiCl as the unconditioned stimulus either on embryonic Days 15 and 16 (E15 and E16) or on 18 and 19 (E18 and E19). Control dams received only garlic, LiCl, or water. Progenies were tested on garlic drinking 6 weeks after the exposure to the stimuli via the mothers. In the E18 to 19 group, rats that were exposed to paired garlic,LiCl expressed a significant aversion for garlic. In the E15 to 16 group, no significant differences appeared between subgroups. These results confirm that an associative memory can be established before birth and suggests that this ability potentially emerges in a short time window of 3 days at the end of gestation. Moreover, it appears that a long-term memory can be acquired in utero and retained to be expressed postnatally when animals are autonomous. © 2004 Wiley Periodicals, Inc. Dev Psychobiol 44: 189,198, 2004. [source] Low-level defective processing of non-verbal sounds in dyslexic childrenDYSLEXIA, Issue 2 2009Paulino Uclés Abstract We compared processing of non-verbal auditory stimuli by dyslexic and non-dyslexic children using electrophysiological methods. The study included 39 children (17 with dyslexia plus 22 controls) assessed via frontal, central, parietal, and temporal electrodes. As an extension of previous P300 event-related potential studies, we analysed variations in the power values of 40-Hz oscillations (gamma-band oscillations involved in cognitive processing) during a specific time window in response to the auditory ,oddball' paradigm that entail target (random 2,kHz) and standard (frequent 1,kHz) stimuli. Dyslexic children differed significantly from controls (P<0.001) in the mean power of the wavelet-transformed 40-Hz oscillation in a time interval starting at 25 ms after stimulus onset up to 50 ms. This means defective processing of sounds. Within groups, standard and target tones elicited significantly different power values (P<0.001). Correlations of values between standard and target responses at each electrode position were not significant within either group, although dyslexics showed a lower correlation than controls. Significant differences in the mean power of these oscillations detected at very early stages of auditory processing in dyslexic children and the wide range of mean values reveal impairment in processing non-verbal sounds in dyslexia. Our results also support recent findings using behavioural and electrophysiological methods suggesting that dyslexia is a general auditory deficit instead of a speech-specific deficit. Copyright © 2008 John Wiley & Sons, Ltd. [source] Cyclodextrin-based nonaqueous electrokinetic chromatography with UV and mass spectrometric detection: Application to the impurity profiling of amiodarone,ELECTROPHORESIS, Issue 17 2008Roelof Mol Abstract The potential of nonaqueous electrokinetic chromatography (NAEKC) using cyclodextrins (CD) for the analysis of basic drugs and related compounds was evaluated. Both UV absorbance and mass spectrometric (MS) detection were employed. Addition of neutral CD to the NA background electrolyte did not significantly enhance the separation of a test mixture of basic drugs, and no change in selectivity was observed. In contrast, anionic single-isomer-sulfated CD strongly added to the selectivity of the NAEKC system inducing an improved resolution among the test compounds and increasing the migration time window. The applicability of the NAEKC system using anionic CD is demonstrated by the profiling of a sample of the drug amiodarone that had been stored for 1,year at room temperature. Amiodarone is poorly soluble in water. NAEKC-UV analysis indicated the presence of at least seven impurities in the amiodarone sample. In order to identify these compounds, the NAEKC system was coupled directly to electrospray ionization (ESI) ion-trap MS. The total of detected impurities increased to 12 due to the added sensitivity and selectivity of MS detection. Based on the acquired MS/MS data, three sample constituents could be identified as ,known' impurities (British Pharmacopoeia), whereas for three unknown impurities molecular structures could be proposed. Estimated limits of detection for amiodarone using the NAEKC method were 1,,g/mL with UV detection and 15,ng/mL with ESI-MS detection (full-scan). Based on relative responses, the impurity content of the stored drug substance was estimated to be 0.33 and 0.47% using NAEKC-UV and NAEKC-ESI-MS, respectively. [source] Recommendation for a definition of acute symptomatic seizureEPILEPSIA, Issue 4 2010Ettore Beghi Summary Purpose:, To consider the definition of acute symptomatic seizures for epidemiological studies, and to refine the criteria used to distinguish these seizures from unprovoked seizures for specific etiologies. Methods:, Systematic review of the literature and of epidemiologic studies. Results:, An acute symptomatic seizure is defined as a clinical seizure occurring at the time of a systemic insult or in close temporal association with a documented brain insult. Suggestions are made to define acute symptomatic seizures as those events occurring within 1 week of stroke, traumatic brain injury, anoxic encephalopathy, or intracranial surgery; at first identification of subdural hematoma; at the presence of an active central nervous system (CNS) infection; or during an active phase of multiple sclerosis or other autoimmune diseases. In addition, a diagnosis of acute symptomatic seizure should be made in the presence of severe metabolic derangements (documented within 24 h by specific biochemical or hematologic abnormalities), drug or alcohol intoxication and withdrawal, or exposure to well-defined epileptogenic drugs. Discussion:, Acute symptomatic seizures must be distinguished from unprovoked seizures and separately categorized for epidemiologic purposes. These recommendations are based upon the best available data at the time of this report. Systematic studies should be undertaken to better define the associations in question, with special reference to metabolic and toxic insults, for which the time window for the occurrence of an acute symptomatic seizure and the absolute values for toxic and metabolic dysfunction still require a clear identification. [source] Relation of apical dendritic spikes to output decision in CA1 pyramidal cells during synchronous activation: a computational studyEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 5 2006José M. Ibarz Abstract Recent studies on the initiation and propagation of dendritic spikes have modified the classical view of postsynaptic integration. Earlier we reported that subthreshold currents and spikes recruited by synaptic currents play a critical role in defining outputs following synchronous activation. Experimental factors strongly condition these currents due to their nonlinear behaviour. Hence, we have performed a detailed parametric study in a CA1 pyramidal cell model to explore how different variables interact and initiate dendritic spiking, and how they influence cell output. The input pattern, the relative excitability of axon and dendrites, the presence/modulation of voltage-dependent channels, and inhibition were cross analysed. Subthreshold currents and spikes on synaptically excited branches fired spikes in other branches to jointly produce different modalities of apical shaft spiking with a variable impact on cell output. Synchronous activation initiated a varying number and temporal scatter of firing branches that produced in the apical shaft-soma axis nonpropagating spikes, pseudosaltatory or continuous forward conduction, or backpropagation. As few as 6,10 local spikes within a time window of 2 ms ensure cell output. However, the activation mode varied extremely when two or more variables were cross-analysed, becoming rather unpredictable when all the variables were considered. Spatially clustered inputs and upper modulation of dendritic Na+ or Ca2+ electrogenesis favour apical decision. In contrast, inhibition biased the output decision toward the axon and switched between dendritic firing modes. We propose that dendrites can discriminate input patterns and decide immediate cell output depending on the particular state of a variety of endogenous parameters. [source] Time-sensitive enhancement of motor learning with the less-affected forelimb after unilateral sensorimotor cortex lesions in ratsEUROPEAN JOURNAL OF NEUROSCIENCE, Issue 8 2005J. Edward Hsu Abstract Unilateral damage to the forelimb region of the sensorimotor cortex (FLsmc) results in time-dependent changes in neuronal activity, structure and connectivity in the contralateral motor cortex of adult rats. These changes have been linked to facilitation of motor skill learning in the less-affected/ipsilesional forelimb, which is likely to promote its use in the development of behavioral compensation. The goal of this study was to determine whether an early post-lesion-sensitive time period exists for this enhanced learning and whether it is linked to synaptogenesis in the contralesional motor cortex. Rats were trained for 21 days on a skilled reaching task with the ipsilesional forelimb beginning 4 or 25 days after unilateral ischemic (endothelin-1-induced) FLsmc lesions or sham operations. As found previously, reaching performance was significantly enhanced in rats trained early post-lesion compared with sham-operates. In rats trained later post-lesion, performance was neither significantly different from time-matched sham-operates nor strikingly different from animals trained earlier post-lesion. In layer V of the contralesional motor cortex, stereological methods for light and electron microscopy revealed significantly more total, multisynaptic bouton and perforated synapses per neuron compared with sham-operates, but there were no significant differences between early- and late-trained lesion groups. Thus, there appears to be a sensitive time window for the maximal expression of the enhanced learning capacity of the less-affected forelimb but this window is broadly, rather than sharply, defined. These results indicate that relatively long-lasting lesion-induced neuronal changes are likely to underlie the facilitation of learning with the less-affected forelimb. [source] METAMORPHOSIS AND NEOTENY: ALTERNATIVE PATHWAYS IN AN EXTINCT AMPHIBIAN CLADEEVOLUTION, Issue 7 2006Rainer R. Schoch Abstract The Branchiosauridae was a clade of small amphibians from the Permo-Carboniferous with an overall salamander-like appearance. The clade is distinguished by an extraordinary fossil record that comprises hundreds of well-preserved specimens, representing a wide range of ontogenetic stages. Branchiosaurids had external gills and weakly ossified skeletons, and due to this larval appearance their status as neotenic (perennibranchiate) froms has long been accepted. Despite their extensive fossil record large specimens with an adult morphology appeared to be lacking altogether, but recently two adult specimens were identified in a rich sample of Apateon gracilis collected in the 19th century from a locality near Dresden, Saxony. These specimens are unique among branchiosaurids in showing a high level of ossification, including bones that have never been reported in a branchiosaur. These highlight the successive formation of features believed to indicate terrestrial locomotion, as well as feeding on larger prey items. Moreover, these transformations occurred in a small time window (whereas the degree of size increase is used as a proxy of time) and the degree of concentration of developmental events in branchiosaurids is unique among tetrapods outside the lissamphibians. These specimens are compared with large adults of the neotenic branchiosaurid Apateon caducus from the Saar-Nahe Basin, which despite their largetr body size lack the features found in the adult. A. gracilis specimens. These specimens give new insight into patterns of metamorphosis (morphological transformation) in branchiosaurids that are believed to be correlated to a change of habitat, and clearly show that different life-history pathways comparable to those of modern salamanders were already estabilshed in this Paleozoic clade. [source] Trading safety for food: evidence from gut contents in roach and bleak captured at different distances offshore from their daytime littoral refugeFRESHWATER BIOLOGY, Issue 5 2006Z. MACIEJ GLIWICZ Summary 1. Regular diel habitat shifts in roach were detected by hydro-acoustics in five moderately eutrophic, stratifying (maximum depth 24,27 m) and approximately circular lakes (of surface area 15, 75, 125, 300 and 900 ha and diameters 250, 600, 1000, 1700 and 2600 m) in north-eastern Poland in the years 1998,2000, when the lakes were free of smelt and other typical offshore planktivores, and their offshore areas were completely free of fish during the day. 2. The diel change in roach distribution was shown to assume a similar pattern in each lake: fish migrated from a daytime littoral refuge towards the centre of the lake at dusk, and returned to the littoral refuge at dawn. After sunset, fish gradually dispersed offshore until they covered the entire lake area in each of the three smaller lakes. In each of the two larger lakes, only small numbers of fish were seen in the central area at night, implying that the centre of the lake retained high food availability throughout the summer. 3. Inshore,offshore gradients in zooplankton prey density, body size, and numbers of eggs per clutch were weak or undetectable in the two smallest lakes, but strong and persistent in the three larger lakes, with Daphnia densities 5,30 times as high and body length 1.2,1.5 times as great in the central area as inshore. 4. The likely increase in the potential predation risk with distance from the littoral daytime refuge was found to be compensated by increased food gains in those fish which moved offshore at dusk to feed within a short time window, when light intensity was lower to make the risk reduced, but still high enough to see zooplankton prey. The benefit because of increased prey acquisition was greatest in the centre of the largest lake (at 1300 m from the shore), as revealed from gut inspections of roach and bleak trawl-sampled at different distances from the edge of the reed belt, and seen as a gradual, order-of-magnitude increase in the volume of food in the foregut, The food volume against distance-from-shore regression was highly significant on each of the four sampling dates in the largest lake, in spite of the wide variability of food volume in individual fish. [source] Absolute palaeointensity of Oligocene (28,30 Ma) lava flows from the Kerguelen Archipelago (southern Indian Ocean)GEOPHYSICAL JOURNAL INTERNATIONAL, Issue 3 2003G. Plenier SUMMARY We report palaeointensity estimates obtained from three Oligocene volcanic sections from the Kerguelen Archipelago (Mont des Ruches, Mont des Tempêtes, and Mont Rabouillère). Of 402 available samples, 102 were suitable for a palaeofield strength determination after a preliminary selection, among which 49 provide a reliable estimate. Application of strict a posteriori criteria make us confident about the quality of the 12 new mean-flow determinations, which are the first reliable data available for the Kerguelen Archipelago. The Virtual Dipole Moments (VDM) calculated for these flows vary from 2.78 to 9.47 1022 Am2 with an arithmetic mean value of 6.15 ± 2.1 1022 Am2. Compilation of these results with a selection of the 2002 updated IAGA palaeointensity database lead to a higher (5.4 ± 2.3 1022 Am2) Oligocene mean VDM than previously reported (Goguitchaichvili et al. 2001; Riisager 1999), identical to the 5.5 ± 2.4 1022 Am2 mean VDM obtained for the 0.3,5 Ma time window. However, these Kerguelen palaeointensity estimates represent half of the reliable Oligocene determinations and thus a bias toward higher values. Nonetheless, the new estimates reported here strengthen the conclusion that the recent geomagnetic field strength is anomalously high compared to that older than 0.3 Ma. [source] A reflector at 200 km depth beneath the northwest PacificGEOPHYSICAL JOURNAL INTERNATIONAL, Issue 1 2001S. Rost SUMMARY We present an analysis of precursors to PP produced by underside reflections from discontinuities in the upper mantle beneath the NW Pacific. The events used for this study occur in the western Pacific Rim (New Zealand, Fiji, Tonga, Solomon, New Guinea, Philippine Islands) and are recorded at the short-period Yellowknife Array (YKA) in northern Canada. The source,receiver combination results in PP reflection points which allow us to study the upper mantle structure in a corridor from the Hawaiian Islands to the Kuril subduction zone. To detect the weak precursors in the time window between the P arrival and the PP onset and to identify them as PP underside reflections, special array techniques are used. Our analysis indicates a reflector at a depth of ,200 km beneath the northwestern Pacific. This reflector shows strong topography of some tens of kilometres on length scales of several hundred kilometres, complicating the detection of this reflector in global or regional stacks of seismograms. Different models for the impedance jump across the reflector, the thickness and the possible fine structure of the reflector are modelled using synthetic seismograms and are compared with the data. The thickness of the reflector has to be less than 7 km and the P wave impedance contrast has to be larger than 5.0,6.5 per cent to be detected by this study. This corresponds to a P -velocity jump of ,4 per cent assuming the PREM density model. [source] Copepod life cycle adaptations and success in response to phytoplankton spring bloom phenologyGLOBAL CHANGE BIOLOGY, Issue 6 2009HANNO SEEBENS Abstract In a seasonal environment, the timing of reproduction is usually scheduled to maximize the survival of offspring. Within deep water bodies, the phytoplankton spring bloom provides a short time window of high food quantity and quality for herbivores. The onset of algal bloom development, however, varies strongly from year to year due to interannual variability in meteorological conditions. Furthermore, the onset is predicted to change with global warming. Here, we use a long-term dataset to study (a) how a cyclopoid copepod, Cyclops vicinus, is dealing with the large variability in phytoplankton bloom phenology, and (b) if bloom phenology has an influence on offspring numbers. C. vicinus performed a two-phase dormancy, that is, the actual diapause of fourth copepodid stages at the lake bottom is followed by a delay in maturation, that is, a quiescence, within the fifth copepodid stage until the start of the spring bloom. This strategy seems to guarantee a high temporal match of the food requirements for successful offspring development, especially through the highly vulnerable naupliar stages, with the phytoplankton spring bloom. However, despite this match with food availability in all study years, offspring numbers, that is, offspring survival rates were higher in years with an early start of the phytoplankton bloom. In addition, the phenology of copepod development suggested that also within study years, early offspring seems to have lower mortality rates than late produced offspring. We suggest that this is due to a longer predator-free time period and/or reduced time stress for development. Hence, within the present climate variability, the copepod benefited from warmer spring temperatures resulting in an earlier phytoplankton spring bloom. Time will show if the copepod's strategy is flexible enough to cope with future warming. [source] Climatic effects on the phenology of lake processesGLOBAL CHANGE BIOLOGY, Issue 11 2004Monika Winder Abstract Populations living in seasonal environments are exposed to systematic changes in physical conditions that restrict the growth and reproduction of many species to only a short time window of the annual cycle. Several studies have shown that climate changes over the latter part of the 20th century affected the phenology and population dynamics of single species. However, the key limitation to forecasting the effects of changing climate on ecosystems lies in understanding how it will affect interactions among species. We investigated the effects of climatic and biotic drivers on physical and biological lake processes, using a historical dataset of 40 years from Lake Washington, USA, and dynamic time-series models to explain changes in the phenological patterns among physical and biological components of pelagic ecosystems. Long-term climate warming and variability because of large-scale climatic patterns like Pacific decadal oscillation (PDO) and El Niño,southern oscillation (ENSO) extended the duration of the stratification period by 25 days over the last 40 years. This change was due mainly to earlier spring stratification (16 days) and less to later stratification termination in fall (9 days). The phytoplankton spring bloom advanced roughly in parallel to stratification onset and in 2002 it occurred about 19 days earlier than it did in 1962, indicating the tight connection of spring phytoplankton growth to turbulent conditions. In contrast, the timing of the clear-water phase showed high variability and was mainly driven by biotic factors. Among the zooplankton species, the timing of spring peaks in the rotifer Keratella advanced strongly, whereas Leptodiaptomus and Daphnia showed slight or no changes. These changes have generated a growing time lag between the spring phytoplankton peak and zooplankton peak, which can be especially critical for the cladoceran Daphnia. Water temperature, PDO, and food availability affected the timing of the spring peak in zooplankton. Overall, the impact of PDO on the phenological processes were stronger compared with ENSO. Our results highlight that climate affects physical and biological processes differently, which can interrupt energy flow among trophic levels, making ecosystem responses to climate change difficult to forecast. [source] Secondary neurogenesis and telencephalic organization in zebrafish and mice: a brief reviewINTEGRATIVE ZOOLOGY (ELECTRONIC), Issue 1 2009Mario F. WULLIMANN Abstract Most zebrafish neurodevelopmental studies have focused on the embryo, which is characterized by primary neurogenesis of mostly transient neurons. Secondary neurogenesis becomes dominant in the hatching larva, when major brain parts are established and begin to differentiate. This developmental period allows for a comparative analysis of zebrafish brain organization with amniotes at equivalent stages of neurogenesis. Within a particular time window, the early forebrains of mice (Embyronic stage [E] 12.5/13.5 days [d]) and zebrafish (3 d) reveal highly comparable expression patterns of genes involved in neurogenesis, for example proneural and other transcription factors (Neurogenin1, NeuroD, Mash1/Zashla and Pax6). Further topological correspondences are seen in the expression of LIM and homeobox genes, such as Lhx6/7, Tbr2 and Dlx2a. When this analysis is extended to gamma-aminobutyric acid/glutamic acid decarboxylase (GABA/GAD) cell patterns during this critical time window, an astonishing degree of similarity between the two species is again seen, for example regarding the presence of GABA/GAD cells in the subpallium, with the pallium only starting to be invaded by such cells from the subpallium. Furthermore, the expression of proneural and other genes correlates with GABA cell patterns (e.g. Mash1/Zash1a gene expression in GABA-positive and Neurogenin1/NeuroD in GABA-negative telencephalic regions) in mice and zebrafish. Data from additional vertebrates, such as Xenopus, are also highly consistent with this analysis. Therefore, the vertebrate forebrain appears to undergo a phylotypic stage of secondary neurogenesis, characterized by regionally separated GABAergic (inhibitory) versus glutamatergic (excitatory) cell production sites, which are obscured later in development by tangential migration. This period is highly advantageous for molecular neuroanatomical cross-species comparisons. [source] Design of an FIR filter for the displacement reconstruction using measured acceleration in low-frequency dominant structuresINTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN ENGINEERING, Issue 4 2010Hae Sung Lee Abstract This paper presents a new class of displacement reconstruction scheme using only acceleration measured from a structure. For a given set of acceleration data, the reconstruction problem is formulated as a boundary value problem in which the acceleration is approximated by the second-order central finite difference of displacement. The displacement is reconstructed by minimizing the least-squared errors between measured and approximated acceleration within a finite time interval. An overlapping time window is introduced to improve the accuracy of the reconstructed displacement. The displacement reconstruction problem becomes ill-posed because the boundary conditions at both ends of each time window are not known a priori. Furthermore, random noise in measured acceleration causes physically inadmissible errors in the reconstructed displacement. A Tikhonov regularization scheme is adopted to alleviate the ill-posedness. It is shown that the proposed method is equivalent to an FIR filter designed in the time domain. The fundamental characteristics of the proposed method are presented in the frequency domain using the transfer function and the accuracy function. The validity of the proposed method is demonstrated by a numerical example, a laboratory experiment and a field test. Copyright © 2009 John Wiley & Sons, Ltd. [source] Network service scheduling and routingINTERNATIONAL TRANSACTIONS IN OPERATIONAL RESEARCH, Issue 6 2004G. Groves Abstract Real-life vehicle routing problems generally have both routing and scheduling aspects to consider. Although this fact is well acknowledged, few heuristic methods exist that address both these complicated aspects simultaneously. We present a graph theoretic heuristic to determine an efficient service route for a single service vehicle through a transportation network that requires a subset of its edges to be serviced, each a specified (potentially different) number of times. The times at which each of these edges are to be serviced should additionally be as evenly spaced over the scheduling time window as possible, thus introducing a scheduling consideration to the problem. Our heuristic is based on the tabu search method, used in conjunction with various well-known graph theoretic algorithms, such as those of Floyd (for determining shortest routes) and Frederickson (for solving the rural postman problem). This heuristic forms the backbone of a decision support system that prompts the user for certain parameters from the physical situation (such as the service frequencies and travel times for each network link as well as bounds in terms of acceptability of results) after which a service routing schedule is suggested as output. The decision support system is applied to a special case study, where a service routing schedule is sought for the South African national railway system by Spoornet (the semi-privatised South African national railways authority and service provider) as part of their rationalisation effort, in order to remain a lucrative company. [source] A travelling salesman problem with allocation, time window and precedence constraints , an application to ship schedulingINTERNATIONAL TRANSACTIONS IN OPERATIONAL RESEARCH, Issue 3 2000K. Fagerholt Abstract A Travelling Salesman Problem with Allocation, Time Window and Precedence Constraints (TSP-ATWPC) is considered. The TSP-ATWPC occurs as a subproblem of optimally sequencing a given set of port visits in a real bulk ship scheduling problem, which is a combined multi-ship pickup and delivery problem with time windows and multi-allocation problem. Each ship in the fleet is equipped with a flexible cargo hold that can be partitioned into several smaller holds in a given number of ways, thus allowing multiple products to be carried simultaneously by the same ship. The allocation constraints of the TSP-ATWPC ensure that the partition of the ship's flexible cargo hold and the allocation of cargoes to the smaller holds are feasible throughout the visiting sequence. The TSP-ATWPC is solved as a shortest path problem on a graph whose nodes are the states representing the set of nodes in the path, the last visited node and the accumulated cargo allocation. The arcs of the graph represent transitions from one state to another. The algorithm is a forward dynamic programming algorithm. A number of domination and elimination tests are introduced to reduce the state space. The computational results show that the proposed algorithm for the TSP-ATWPC works, and optimal solutions are obtained to the real ship scheduling problem. [source] Weather packages: finding the right scale and composition of climate in ecologyJOURNAL OF ANIMAL ECOLOGY, Issue 6 2005NILS CHR. Summary 1Animals are affected by local weather variables such as temperature, rainfall and snow. However, large-scale climate indices such as the North Atlantic Oscillation (NAO) often outperform local weather variables when it comes to explain climate-related variation in life history traits or animal numbers. 2In a recent paper, Hallet et al. (2004, Nature, 430, 71,75) document convincingly why this may happen. In this perspective, we identify from the literature three mechanisms why this is so: (1) the time window; (2) the spatial window; and (3) the weather composition component of climate. 3Such an understanding may be used to derive even better ,weather packages' than the NAO. [source] Magnetic resonance portography using contrast-enhanced fat-saturated three-dimensional steady-state free precession imagingJOURNAL OF MAGNETIC RESONANCE IMAGING, Issue 2 2004Yasuo Amano MD Abstract Purpose To assess the feasibility of contrast-enhanced fat-saturated three-dimensional steady-state free precession (FIESTA) imaging for contrast-enhanced magnetic resonance (MR) portography. Materials and Methods Contrast-enhanced fat-saturated three-dimensional fast spoiled gradient-echo (SPGR) and FIESTA were performed as MR portography. In 10 cases, fat-saturated three-dimensional FIESTA was first performed and followed by fast SPGR, and the order of post-contrast imaging was reversed in the other 10 cases. Signal-to-noise ratios (SNRs) and contrast-to-noise ratios (CNRs) were estimated for portal and visceral veins on the source images. The visualization of portal vein was scored on three-dimensional MR portography. Portal venous system disorders were assessed using three-dimensional MR portography. Results The SNRs, CNRs, and visual assessment of portal and visceral veins were significantly higher in contrast-enhanced fat-saturated three-dimensional FIESTA than contrast-enhanced fat-saturated three-dimensional fast SPGR (P < 0.05). The contrast-enhanced fat-saturated three-dimensional FIESTA provided high venous signals even at 8 minutes after gadolinium injection. The abnormalities of portal venous system were well visualized with MR portography using contrast-enhanced fat-saturated three-dimensional FIESTA. Conclusion Contrast-enhanced fat-saturated three-dimensional FIESTA was valuable for MR portography, with flexible time window and high vascular signals. This imaging may allow for other post-contrast imaging options before portography and release patients from consecutive breath-holds. J. Magn. Reson. Imaging 2004;19:238,244. © 2004 Wiley-Liss, Inc. [source] An algorithm for thorough background subtraction from high-resolution LC/MS data: application for detection of glutathione-trapped reactive metabolitesJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 9 2008Haiying Zhang Abstract A control sample background-subtraction algorithm was developed for thorough subtraction of background and matrix-related signals in high-resolution, accurate mass liquid chromatography/mass spectrometry (LC/MS) data to reveal ions of interest in an analyte sample. This algorithm checked all ions in the control scans within a specified time window around the analyte scan for potential subtraction of ions found in that analyte scan. Applying this method, chromatographic fluctuations between runs were dealt with and background and matrix-related signals in the sample could be thoroughly subtracted. The effectiveness of this algorithm was demonstrated using four test compounds, clozapine, diclofenac, imipramine, and tacrine, to reveal glutathione (GSH)-trapped reactive metabolites after incubation with human liver microsomes supplemented with GSH (30 µM compound, 45-min incubation). Using this algorithm with a ± 1.0 min control scan time window, a ± 5 ppm mass error tolerance, and appropriate control samples, the GSH-trapped metabolites were revealed as the major peaks in the processed LC/MS profiles. Such profiles allowed for comprehensive and reliable identification of these metabolites without the need for any presumptions regarding their behavior or properties with respect to mass spectrometric detection. The algorithm was shown to provide superior results when compared to several commercially available background-subtraction algorithms. Many of the metabolites detected were doubly charged species which would be difficult to detect with traditional GSH adduct screening techniques, and thus, some of the adducts have not previously been reported in the literature. Copyright © 2008 John Wiley & Sons, Ltd. [source] An algorithm for thorough background subtraction from high-resolution LC/MS data: application to the detection of troglitazone metabolites in rat plasma, bile, and urineJOURNAL OF MASS SPECTROMETRY (INCORP BIOLOGICAL MASS SPECTROMETRY), Issue 9 2008Haiying Zhang Abstract Interferences from biological matrices remain a major challenge to the in vivo detection of drug metabolites. For the last few decades, predicted metabolite masses and fragmentation patterns have been employed to aid in the detection of drug metabolites in liquid chromatography/mass spectrometry (LC/MS) data. Here we report the application of an accurate mass-based background-subtraction approach for comprehensive detection of metabolites formed in vivo using troglitazone as an example. A novel algorithm was applied to check all ions in the spectra of control scans within a specified time window around an analyte scan for potential background subtraction from that analyte spectrum. In this way, chromatographic fluctuations between control and analyte samples were dealt with, and background and matrix-related signals could be effectively subtracted from the data of the analyte sample. Using this algorithm with a ± 1.0 min control scan time window, a ± 10 ppm mass error tolerance, and respective predose samples as controls, troglitazone metabolites were reliably identified in rat plasma and bile samples. Identified metabolites included those reported in the literature as well as some that had not previously been reported, including a novel sulfate conjugate in bile. In combination with mass defect filtering, this algorithm also allowed for identification of troglitazone metabolites in rat urine samples. With a generic data acquisition method and a simple algorithm that requires no presumptions of metabolite masses or fragmentation patterns, this high-resolution LC/MS-based background-subtraction approach provides an efficient alternative for comprehensive metabolite identification in complex biological matrices. Copyright © 2008 John Wiley & Sons, Ltd. [source] Novel intra-arterial strategies in the treatment of acute ischaemic strokeJOURNAL OF MEDICAL IMAGING AND RADIATION ONCOLOGY, Issue 3 2008PP Ng Summary Acute ischaemic stroke is among the leading causes of death and disability in developed societies. I.v. and intra-arterial thrombolysis, and mechanical thrombectomy carried out within the appropriate time window can result in superior clinical outcomes compared with traditional therapy consisting of anticoagulation and/or aspirin. In cases where thrombolysis and/or thrombectomy have not been proven effective or have failed to result in rapid clinical and/or angiographic improvement, novel intra-arterial strategies may be applied by experienced interventional neuroradiologists to achieve recanalization of recalcitrant vessel occlusions with good clinical outcomes. [source] Signaling, delivery and age as emerging issues in the benefit/risk ratio outcome of tPA For treatment of CNS ischemic disordersJOURNAL OF NEUROCHEMISTRY, Issue 2 2010William M. Armstead J. Neurochem. (2010) 113, 303,312. Abstract Stroke is a leading cause of morbidity and mortality. While tissue-type plasminogen activator (tPA) remains the only FDA-approved treatment for ischemic stroke, clinical use of tPA has been constrained to roughly 3% of eligible patients because of the danger of intracranial hemorrhage and a narrow 3 h time window for safe administration. Basic science studies indicate that tPA enhances excitotoxic neuronal cell death. In this review, the beneficial and deleterious effects of tPA in ischemic brain are discussed along with emphasis on development of new approaches toward treatment of patients with acute ischemic stroke. In particular, roles of tPA-induced signaling and a novel delivery system for tPA administration based on tPA coupling to carrier red blood cells will be considered as therapeutic modalities for increasing tPA benefit/risk ratio. The concept of the neurovascular unit will be discussed in the context of dynamic relationships between tPA-induced changes in cerebral hemodynamics and histopathologic outcome of CNS ischemia. Additionally, the role of age will be considered since thrombolytic therapy is being increasingly used in the pediatric population, but there are few basic science studies of CNS injury in pediatric animals. [source] Acute Activation of Hippocampal Glucocorticoid Receptors Results in Different Waves of Gene Expression Throughout TimeJOURNAL OF NEUROENDOCRINOLOGY, Issue 4 2006M. C. Morsink Abstract Several aspects of hippocampal cell function are influenced by adrenal-secreted glucocorticoids in a delayed, genomic fashion. Previously, we used Serial Analysis of Gene Expression to identify glucocorticoid receptor (GR)-induced transcriptional changes in the hippocampus at a fixed time point. However, because changes in mRNA levels are transient and most likely precede the effects on hippocampal cell function, the aim of the current study was to assess the transcriptional changes in a broader time window by generating a time curve of GR-mediated gene expression changes. Therefore, we used rat hippocampal slices obtained from adrenalectomised rats, substituted in vivo with low corticosterone pellets, predominantly occupying the hippocampal mineralocorticoid receptors. To activate GR, slices were treated in vitro with a high (100 nM) dose of corticosterone and gene expression was profiled 1, 3 and 5 h after GR-activation. Using Affymetrix GeneChips, a striking pattern with different waves of gene expression was observed, shifting from exclusively down-regulated genes 1 h after GR-activation to both up and down regulated genes 3 h after GR-activation. After 5 h, the response was almost back to baseline. Additionally, real-time quantitative polymerase chain reaction was used for validation of a selection of responsive genes including genes involved in neurotransmission and synaptic plasticity such as the corticotropin releasing hormone receptor 1, monoamine oxidase A, LIMK1 and calmodulin 2. This permitted confirmation of GR-responsiveness of 15 out of 18 selected genes. In conclusion, direct activation of GR in hippocampal slices results in transient changes in gene expression. The pattern in which gene expression was modulated suggests that the fast genomic effects of glucocorticoids may be realised via transrepression, preceding a later wave of transactivation. Furthermore, we identified a number of interesting candidate genes which may underlie the glucocorticoid-mediated effects on hippocampal cell function. [source] Generation of spinal motor neurons from human fetal brain-derived neural stem cells: Role of basic fibroblast growth factorJOURNAL OF NEUROSCIENCE RESEARCH, Issue 2 2009Paivi M. Jordan Abstract Neural stem cells (NSCs) have some specified properties but are generally uncommitted and so can change their fate after exposure to environmental cues. It is unclear to what extent this NSC plasticity can be modulated by extrinsic cues and what are the molecular mechanisms underlying neuronal fate determination. Basic fibroblast growth factor (bFGF) is a well-known mitogen for proliferating NSCs. However, its role in guiding stem cells for neuronal subtype specification is undefined. Here we report that in-vitro-expanded human fetal forebrain-derived NSCs can generate cholinergic neurons with spinal motor neuron properties when treated with bFGF within a specific time window. bFGF induces NSCs to express the motor neuron marker Hb9, which is blocked by specific FGF receptor inhibitors and bFGF neutralizing antibodies. This development of spinal motor neuron properties is independent of selective proliferation or survival and does not require high levels of MAPK activation. Thus our study indicates that bFGF can play an important role in modulating plasticity and neuronal fate of human NSCs and presumably has implications for exploring the full potential of brain NSCs for clinical applications, particularly in spinal motor neuron regeneration. © 2008 Wiley-Liss, Inc. [source] High-performance separation of small inorganic anions on a methacrylate-based polymer monolith grafted with [2(methacryloyloxy)ethyl] trimethylammonium chlorideJOURNAL OF SEPARATION SCIENCE, JSS, Issue 15-16 2009Damian Connolly Abstract A glycidyl methacrylate- co -ethylene dimethacrylate monolith in capillary format (100 ,m/id) has been grafted with chains of poly([2(methacryloyloxy)ethyl] trimethylammonium chloride (poly-META) and applied to the ion-chromatographic separation of selected inorganic anions. Grafting chains of META onto the generic monolithic scaffold resulted in a monolith with ,electrolyte responsive flow permeability', which manifested as increased permeability in the presence of electrolyte solutions. Using an eluent of 2 mM sodium benzoate and on-column contactless conductivity detection, a test mixture of six common anions was isocratically separated and detected within 12 min, with the first four anions baseline resolved within a retention time window of 3.2 min. Retention time precision was ,1.2% for all anions tested. Separation efficiencies of 15 000 N/m were achieved for fluoride at 1 ,L/min, with column efficiencies up to 29 500 N/m obtained at a lower flow rate of 100 nL/min. Furthermore, repeatability of the column modification procedure using photografting methods was acceptable, with retention times between replicate columns matching within 9%. [source] Optimal methods for fluorescence and diffuse reflectance measurements of tissue biopsy samplesLASERS IN SURGERY AND MEDICINE, Issue 3 2002Gregory M. Palmer BS Abstract Background and Objective In developing fluorescence spectroscopy systems for the in vivo detection of pre-cancer and cancer, it is often necessary to perform preliminary testing on tissue biopsies. Current standard protocols call for the tissue to be immediately frozen after biopsy and later thawed for spectroscopic analysis, but this process can have profound effects on the spectroscopic properties of tissue. This study investigates the optimal tissue handling methods for in vitro fluorescence spectroscopy studies. Study Design/Materials and Methods The epithelial tissue of the Golden Syrian hamster cheek pouch was used in this study. Three specific experiments were carried out. First, the fluorescence properties of tissues in vivo and of frozen and thawed tissue biopsies were characterized at multiple excitation wavelengths spanning the ultraviolet-visible (UV-VIS) spectrum. Next, comparison of tissue fluorescence emission spectra in vivo, ex vivo (immediately after biopsy), and after the freeze and thaw process were systematically carried out at the excitation wavelengths corresponding to the previously identified fluorescence peaks. Lastly, intensities at the excitation and emission wavelength pairs corresponding to the fluorescence peaks were measured as a function of time after biopsy. Diffuse reflectance measurements over the UV-VIS spectrum were also made to evaluate the effects of oxygenation, blood volume, and scattering on the tissue fluorescence at these different excitation,emission wavelengths. Results This study indicates that the freezing and thawing process produces a significant deviation in intensity and lineshape relative to the in vivo fluorescence emission spectral data over the entire UV-VIS range between 300 and 700 nm. By contrast, examination of ex vivo emission spectra reveals that it closely preserves both the intensity and lineshape of the in vivo emission spectra except between 500 and 700 nm. The observed deviations can be explained by the diffuse reflectance measurements, which suggest increased hemoglobin deoxygenation and wavelength dependent changes in scattering in ex vivo tissues, and increased total hemoglobin absorption in the frozen and thawed samples. Furthermore, it was found that over a time window of 1.5 hours, spectroscopic changes brought about by degradation of the tissue due to biopsy or other factors are significantly smaller (10,30% variations in intensity) than those associated with the freezing and thawing process (50,70% decrease in intensity). Conclusions It was found that the effects of freezing and thawing on the fluorescence properties of tissue are greater than any changes brought about by degradation of tissue over a time frame of 90 minutes after biopsy. Performing ex vivo fluorescence measurements within a reasonable time window has the advantage of more accurately reproducing the clinically relevant in vivo conditions in the case of the hamster cheek pouch tissue. Therefore, in tissue biopsy studies, the tissue sample should ideally be maintained in an unfrozen state prior to measurement. Lasers Surg. Med. 30:191-200, 2002. © 2002 Wiley-Liss, Inc. [source] | |||||||||||||||||||||||||||||||